Ggra3264.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3264.t1
Unique NameGgra3264.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000851_piloncontigtig00000851_pilon:145236..146312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3264Ggra3264Gracilaria gracilis GNS1m malegenetig00000851_pilon 145236..146312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1Ggra3264.t1Gracilaria gracilis GNS1m malepolypeptidetig00000851_pilon 145236..146312 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1.start1Ggra3264.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000851_pilon 145236..145238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1.CDS1Ggra3264.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000851_pilon 145236..145535 +
Ggra3264.t1.CDS2Ggra3264.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000851_pilon 145632..146312 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1.exon1Ggra3264.t1.exon1Gracilaria gracilis GNS1m maleexontig00000851_pilon 145236..145535 +
Ggra3264.t1.exon2Ggra3264.t1.exon2Gracilaria gracilis GNS1m maleexontig00000851_pilon 145632..146312 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1.intron1Ggra3264.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000851_pilon 145536..145631 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3264.t1.stop1Ggra3264.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000851_pilon 146310..146312 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3264.t1 ID=Ggra3264.t1|Name=Ggra3264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp
MAVITTSSFGTLSAVSIASASSALHCALSAVLQLLTTQPNLQKQLHLPPF
VSDLLPSSSSINAPLRPTPDFHRASQTPQAYCFEPTHITSLLPTLEHERQ
PSLLLIHSSSITVDAPLLPFNVHTCTPSQLCLIDDNPHFVPHAGASPVPI
TLASLELSIQHVSQLEPQSQGVILALARRNALLTDISLAALAEDALVLRF
IHEHLAKLELSSHVRNVLRAVVAPTLPVKSLAESVLSLCVSEKFVVRPRF
SLPELDGKQHYGTFRDAQSLLTAVRTEKQQVERVVHALRVEHAPILYNYR
WLPVVWFAVSLLTAATPHGAPYLNVF*
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spliced messenger RNA

>Ggra3264.t1 ID=Ggra3264.t1|Name=Ggra3264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000851_pilon:145236..146312+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCATCACCACTTCCTCCTTTGGCACTCTTTCCGCCGTATCCAT
CGCCTCTGCTTCCTCTGCGCTTCACTGCGCGCTATCCGCCGTTCTGCAGC
TGCTCACCACTCAGCCCAACCTCCAGAAACAGCTTCATCTACCCCCCTTC
GTCAGCGACCTTCTTCCGTCCTCGTCGTCAATCAATGCACCGCTCCGCCC
CACGCCCGACTTCCACCGCGCCTCCCAAACCCCCCAAGCGTATTGCTTTG
AGCCGACGCACATCACTTCCCTCCTACCGACGTTGGAACACGAGCGTCAG
CCTAGTCTATTACTCATTCATTCATCATCTATTACCGTCGATGCACCACT
GCTTCCGTTCAACGTGCACACATGCACGCCTTCTCAGCTTTGCCTCATCG
ATGACAACCCTCACTTCGTCCCACACGCGGGCGCGTCACCAGTTCCCATC
ACTCTGGCGTCGCTTGAACTCAGTATACAACATGTGTCACAACTCGAGCC
CCAGTCACAAGGCGTTATCCTGGCGCTGGCGAGGCGCAACGCTCTGTTAA
CTGACATCTCGCTGGCGGCACTAGCGGAGGACGCGCTCGTGCTCCGTTTC
ATTCACGAGCATCTCGCGAAGCTGGAGCTGTCCTCCCATGTTCGCAATGT
GCTGCGCGCAGTCGTGGCGCCCACGTTGCCCGTCAAAAGCCTTGCGGAAA
GTGTGTTGAGTCTTTGTGTATCAGAGAAGTTCGTGGTTCGTCCTCGCTTC
TCGCTGCCTGAGCTCGACGGTAAGCAACACTACGGCACGTTCCGCGACGC
ACAGTCGTTGCTGACCGCCGTGCGCACGGAGAAGCAGCAAGTTGAACGCG
TCGTACACGCGCTGCGCGTGGAACATGCCCCCATTCTGTACAACTACCGC
TGGTTGCCGGTGGTGTGGTTTGCGGTGTCGCTTCTTACGGCCGCCACGCC
TCATGGCGCCCCATACTTGAACGTCTTTTGA
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protein sequence of Ggra3264.t1

>Ggra3264.t1 ID=Ggra3264.t1|Name=Ggra3264.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=327bp
MAVITTSSFGTLSAVSIASASSALHCALSAVLQLLTTQPNLQKQLHLPPF
VSDLLPSSSSINAPLRPTPDFHRASQTPQAYCFEPTHITSLLPTLEHERQ
PSLLLIHSSSITVDAPLLPFNVHTCTPSQLCLIDDNPHFVPHAGASPVPI
TLASLELSIQHVSQLEPQSQGVILALARRNALLTDISLAALAEDALVLRF
IHEHLAKLELSSHVRNVLRAVVAPTLPVKSLAESVLSLCVSEKFVVRPRF
SLPELDGKQHYGTFRDAQSLLTAVRTEKQQVERVVHALRVEHAPILYNYR
WLPVVWFAVSLLTAATPHGAPYLNVF*
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mRNA from alignment at tig00000851_pilon:145236..146312+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3264.t1 ID=Ggra3264.t1|Name=Ggra3264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000851_pilon:145236..146312+ (Gracilaria gracilis GNS1m male)
ATGGCCGTCATCACCACTTCCTCCTTTGGCACTCTTTCCGCCGTATCCAT
CGCCTCTGCTTCCTCTGCGCTTCACTGCGCGCTATCCGCCGTTCTGCAGC
TGCTCACCACTCAGCCCAACCTCCAGAAACAGCTTCATCTACCCCCCTTC
GTCAGCGACCTTCTTCCGTCCTCGTCGTCAATCAATGCACCGCTCCGCCC
CACGCCCGACTTCCACCGCGCCTCCCAAACCCCCCAAGCGTATTGCTTTG
AGCCGACGCACATCACTTCCCTCCTACCGACGTTGGAACACGAGCGTCAG
GTGCTGTTGCAGGCGTCCAAGGCGCCACCCGTCACGGCTGCCACGTTGTT
GATCTCGCTTGTGTGCTCTTAAATACGCTCCTTCTCCGCATCGCAGCCTA
GTCTATTACTCATTCATTCATCATCTATTACCGTCGATGCACCACTGCTT
CCGTTCAACGTGCACACATGCACGCCTTCTCAGCTTTGCCTCATCGATGA
CAACCCTCACTTCGTCCCACACGCGGGCGCGTCACCAGTTCCCATCACTC
TGGCGTCGCTTGAACTCAGTATACAACATGTGTCACAACTCGAGCCCCAG
TCACAAGGCGTTATCCTGGCGCTGGCGAGGCGCAACGCTCTGTTAACTGA
CATCTCGCTGGCGGCACTAGCGGAGGACGCGCTCGTGCTCCGTTTCATTC
ACGAGCATCTCGCGAAGCTGGAGCTGTCCTCCCATGTTCGCAATGTGCTG
CGCGCAGTCGTGGCGCCCACGTTGCCCGTCAAAAGCCTTGCGGAAAGTGT
GTTGAGTCTTTGTGTATCAGAGAAGTTCGTGGTTCGTCCTCGCTTCTCGC
TGCCTGAGCTCGACGGTAAGCAACACTACGGCACGTTCCGCGACGCACAG
TCGTTGCTGACCGCCGTGCGCACGGAGAAGCAGCAAGTTGAACGCGTCGT
ACACGCGCTGCGCGTGGAACATGCCCCCATTCTGTACAACTACCGCTGGT
TGCCGGTGGTGTGGTTTGCGGTGTCGCTTCTTACGGCCGCCACGCCTCAT
GGCGCCCCATACTTGAACGTCTTTTGA
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Coding sequence (CDS) from alignment at tig00000851_pilon:145236..146312+

>Ggra3264.t1 ID=Ggra3264.t1|Name=Ggra3264.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000851_pilon:145236..146312+ (Gracilaria gracilis GNS1m male)
ATGGCCGTCATCACCACTTCCTCCTTTGGCACTCTTTCCGCCGTATCCAT
CGCCTCTGCTTCCTCTGCGCTTCACTGCGCGCTATCCGCCGTTCTGCAGC
TGCTCACCACTCAGCCCAACCTCCAGAAACAGCTTCATCTACCCCCCTTC
GTCAGCGACCTTCTTCCGTCCTCGTCGTCAATCAATGCACCGCTCCGCCC
CACGCCCGACTTCCACCGCGCCTCCCAAACCCCCCAAGCGTATTGCTTTG
AGCCGACGCACATCACTTCCCTCCTACCGACGTTGGAACACGAGCGTCAG
CCTAGTCTATTACTCATTCATTCATCATCTATTACCGTCGATGCACCACT
GCTTCCGTTCAACGTGCACACATGCACGCCTTCTCAGCTTTGCCTCATCG
ATGACAACCCTCACTTCGTCCCACACGCGGGCGCGTCACCAGTTCCCATC
ACTCTGGCGTCGCTTGAACTCAGTATACAACATGTGTCACAACTCGAGCC
CCAGTCACAAGGCGTTATCCTGGCGCTGGCGAGGCGCAACGCTCTGTTAA
CTGACATCTCGCTGGCGGCACTAGCGGAGGACGCGCTCGTGCTCCGTTTC
ATTCACGAGCATCTCGCGAAGCTGGAGCTGTCCTCCCATGTTCGCAATGT
GCTGCGCGCAGTCGTGGCGCCCACGTTGCCCGTCAAAAGCCTTGCGGAAA
GTGTGTTGAGTCTTTGTGTATCAGAGAAGTTCGTGGTTCGTCCTCGCTTC
TCGCTGCCTGAGCTCGACGGTAAGCAACACTACGGCACGTTCCGCGACGC
ACAGTCGTTGCTGACCGCCGTGCGCACGGAGAAGCAGCAAGTTGAACGCG
TCGTACACGCGCTGCGCGTGGAACATGCCCCCATTCTGTACAACTACCGC
TGGTTGCCGGTGGTGTGGTTTGCGGTGTCGCTTCTTACGGCCGCCACGCC
TCATGGCGCCCCATACTTGAACGTCTTTTGA
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