Ggra325.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra325.t1
Unique NameGgra325.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000209_piloncontigtig00000209_pilon:69980..71010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008607316.1
Preferred nameHIS7
PFAMsGATase,His_biosynth
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00074,RC01190,RC01943
KEGG koko:K01493,ko:K01663
KEGG ReactionR01663,R04558
KEGG Pathwayko00240,ko00340,ko01100,ko01110,ko01230,map00240,map00340,map01100,map01110,map01230
KEGG ModuleM00026,M00429
GOsGO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue3.54e-34
EggNOG OGsCOG0107@1|root,KOG0623@2759|Eukaryota
EC3.5.4.12
Descriptionimidazoleglycerol-phosphate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra325Ggra325Gracilaria gracilis GNS1m malegenetig00000209_pilon 69980..71010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1Ggra325.t1Gracilaria gracilis GNS1m malepolypeptidetig00000209_pilon 69980..71010 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1.start1Ggra325.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000209_pilon 69980..69982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1.CDS1Ggra325.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000209_pilon 69980..70021 +
Ggra325.t1.CDS2Ggra325.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000209_pilon 70351..71010 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1.exon1Ggra325.t1.exon1Gracilaria gracilis GNS1m maleexontig00000209_pilon 69980..70021 +
Ggra325.t1.exon2Ggra325.t1.exon2Gracilaria gracilis GNS1m maleexontig00000209_pilon 70351..71010 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1.intron1Ggra325.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000209_pilon 70022..70350 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra325.t1.stop1Ggra325.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000209_pilon 71008..71010 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra325.t1 ID=Ggra325.t1|Name=Ggra325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MATSSLKCPQADCHTDVLTVLDYGGGNVRSLLNALHQFDLALRSYVVDGR
QFFGISLWLHTLFKRSEECPDVPGLAVFPDVVRRFRHTRSAGLAAPHIGW
KAMNVSRPLSVLAGDGTRYCFLPSYLVDVDLDQSAAPNASVAKATVATPW
HFVPFLTALQLENVVALQFQPEKSGPYKLSLLQNFVFDTFTHRSAVAPAT
AFEEMEKGLVACLDVCQNDHGDLVVTMDDQCDV*
back to top

spliced messenger RNA

>Ggra325.t1 ID=Ggra325.t1|Name=Ggra325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000209_pilon:69980..71010+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACATCTTCCCTTAAGTGCCCGCAGGCCGATTGCCATACAGATGT
TCTCACCGTGCTGGACTACGGCGGCGGCAACGTTCGCTCATTGCTCAACG
CGCTGCATCAATTTGACCTCGCGTTGCGCAGCTACGTCGTGGATGGACGC
CAGTTTTTCGGCATCTCTCTCTGGCTGCACACCTTGTTCAAACGCTCGGA
AGAATGCCCCGATGTGCCTGGGCTCGCCGTGTTTCCGGACGTCGTGCGCC
GCTTTCGCCACACGCGCAGTGCTGGCTTGGCTGCGCCGCATATCGGCTGG
AAGGCTATGAATGTTTCGCGCCCGCTGTCGGTGCTGGCCGGTGATGGCAC
GCGTTACTGCTTTTTGCCGTCGTATCTCGTCGATGTGGATCTTGACCAGA
GTGCCGCTCCGAACGCATCCGTCGCTAAAGCGACAGTAGCTACTCCCTGG
CATTTCGTACCGTTTCTAACCGCTTTGCAATTGGAAAACGTGGTCGCCCT
ACAGTTTCAACCGGAGAAATCCGGCCCGTATAAACTGAGTTTACTTCAAA
ATTTTGTGTTCGATACATTTACGCATCGCTCGGCGGTGGCGCCGGCGACG
GCTTTCGAAGAGATGGAGAAAGGCCTCGTGGCGTGTCTGGATGTGTGTCA
GAATGATCATGGCGATCTGGTCGTGACCATGGACGACCAGTGTGACGTTT
GA
back to top

protein sequence of Ggra325.t1

>Ggra325.t1 ID=Ggra325.t1|Name=Ggra325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MATSSLKCPQADCHTDVLTVLDYGGGNVRSLLNALHQFDLALRSYVVDGR
QFFGISLWLHTLFKRSEECPDVPGLAVFPDVVRRFRHTRSAGLAAPHIGW
KAMNVSRPLSVLAGDGTRYCFLPSYLVDVDLDQSAAPNASVAKATVATPW
HFVPFLTALQLENVVALQFQPEKSGPYKLSLLQNFVFDTFTHRSAVAPAT
AFEEMEKGLVACLDVCQNDHGDLVVTMDDQCDV*
back to top

mRNA from alignment at tig00000209_pilon:69980..71010+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra325.t1 ID=Ggra325.t1|Name=Ggra325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1031bp|location=Sequence derived from alignment at tig00000209_pilon:69980..71010+ (Gracilaria gracilis GNS1m male)
ATGGCTACATCTTCCCTTAAGTGCCCGCAGGCCGATTGCCATGTAACTTT
TTTAGGTAACATTCCCTTCTGTGGTGATTGTCTGACCGTCGATGCTCAAT
ATGCACAAGATTGCTACTAATTGGAATACACAATGACGTGGAAGGCAAAA
TTTGGCATCAATATGATTTCCTGGCTGTTTAAACTTGATCCCACAGCTAA
AAAAGGGGCAGGTTTTGATAGATTCAAACGGCAGCATTGTCAGCGTAACG
CAACGTGCTTAGATTACAttcaaggtacccaaaagggctattttttaagg
cggagcagtgagcacgagttcttttcgttaccattgctttcgtgaccACC
CATTTTGGGTGGACCCGTCAGACAGATGTTCTCACCGTGCTGGACTACGG
CGGCGGCAACGTTCGCTCATTGCTCAACGCGCTGCATCAATTTGACCTCG
CGTTGCGCAGCTACGTCGTGGATGGACGCCAGTTTTTCGGCATCTCTCTC
TGGCTGCACACCTTGTTCAAACGCTCGGAAGAATGCCCCGATGTGCCTGG
GCTCGCCGTGTTTCCGGACGTCGTGCGCCGCTTTCGCCACACGCGCAGTG
CTGGCTTGGCTGCGCCGCATATCGGCTGGAAGGCTATGAATGTTTCGCGC
CCGCTGTCGGTGCTGGCCGGTGATGGCACGCGTTACTGCTTTTTGCCGTC
GTATCTCGTCGATGTGGATCTTGACCAGAGTGCCGCTCCGAACGCATCCG
TCGCTAAAGCGACAGTAGCTACTCCCTGGCATTTCGTACCGTTTCTAACC
GCTTTGCAATTGGAAAACGTGGTCGCCCTACAGTTTCAACCGGAGAAATC
CGGCCCGTATAAACTGAGTTTACTTCAAAATTTTGTGTTCGATACATTTA
CGCATCGCTCGGCGGTGGCGCCGGCGACGGCTTTCGAAGAGATGGAGAAA
GGCCTCGTGGCGTGTCTGGATGTGTGTCAGAATGATCATGGCGATCTGGT
CGTGACCATGGACGACCAGTGTGACGTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000209_pilon:69980..71010+

>Ggra325.t1 ID=Ggra325.t1|Name=Ggra325.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000209_pilon:69980..71010+ (Gracilaria gracilis GNS1m male)
ATGGCTACATCTTCCCTTAAGTGCCCGCAGGCCGATTGCCATACAGATGT
TCTCACCGTGCTGGACTACGGCGGCGGCAACGTTCGCTCATTGCTCAACG
CGCTGCATCAATTTGACCTCGCGTTGCGCAGCTACGTCGTGGATGGACGC
CAGTTTTTCGGCATCTCTCTCTGGCTGCACACCTTGTTCAAACGCTCGGA
AGAATGCCCCGATGTGCCTGGGCTCGCCGTGTTTCCGGACGTCGTGCGCC
GCTTTCGCCACACGCGCAGTGCTGGCTTGGCTGCGCCGCATATCGGCTGG
AAGGCTATGAATGTTTCGCGCCCGCTGTCGGTGCTGGCCGGTGATGGCAC
GCGTTACTGCTTTTTGCCGTCGTATCTCGTCGATGTGGATCTTGACCAGA
GTGCCGCTCCGAACGCATCCGTCGCTAAAGCGACAGTAGCTACTCCCTGG
CATTTCGTACCGTTTCTAACCGCTTTGCAATTGGAAAACGTGGTCGCCCT
ACAGTTTCAACCGGAGAAATCCGGCCCGTATAAACTGAGTTTACTTCAAA
ATTTTGTGTTCGATACATTTACGCATCGCTCGGCGGTGGCGCCGGCGACG
GCTTTCGAAGAGATGGAGAAAGGCCTCGTGGCGTGTCTGGATGTGTGTCA
GAATGATCATGGCGATCTGGTCGTGACCATGGACGACCAGTGTGACGTTT
GA
back to top