Ggra3246.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3246.t1
Unique Name	Ggra3246.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	470

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000922_pilon	contig	tig00000922_pilon:168452..169861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3246	Ggra3246	Gracilaria gracilis GNS1m male	gene	tig00000922_pilon 168452..169861 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3246.t1.start1	Ggra3246.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000922_pilon 168452..168454 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3246.t1.CDS1	Ggra3246.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000922_pilon 168452..169861 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3246.t1.exon1	Ggra3246.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000922_pilon 168452..169861 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3246.t1.stop1	Ggra3246.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000922_pilon 169859..169861 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3246.t1	Ggra3246.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000922_pilon 168452..169861 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000922_pilon:168452..169861+
coding sequence from alignment at tig00000922_pilon:168452..169861+

mRNA sequence

>Ggra3246.t1 ID=Ggra3246.t1|Name=Ggra3246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=470bp
MRLPHLPDDLLLRISRALMCDDGTQKAHNLRDLWNFAITCRRMHAMAMKM
MSELRTTSVLAEESVLYNVVTTTPDDVVQGTLLALRAGSDGAALSTLRSL
RLCAMARDQLQPALQRLRACVKLTTLCFVDVEGGVRVPDEVARRVQMLSI
MVPRVLTMQALHKARCAPKTILLCCVDDHTAWELPKLWDELTRESKRVDV
SWSGDLVCRYDNDFWGNWYLSERQHEDNASYVYSGRRMVPFGPPYASTMS
SIPMYSCGTVQLSTWVSERMNDLPVEEIFFEEDDLLVVEVDTSPIAKALL
RQGALMSGVVHSMLRDCIRGAFRLLIFTRRPFDEESEQVMPKAGAKLAAL
AASVGGVRELLVSPSVFVALKDVVLPATVSSVGVVGYFTYPNFVRELPAT
LLALARGRAAAKQRSVWMQQMQLREESDDLCTEAMLRRAQAACRRAETAG
LCAAGVRGTVEQWLRDRAG*

spliced messenger RNA

>Ggra3246.t1 ID=Ggra3246.t1|Name=Ggra3246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000922_pilon:168452..169861+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTTCCGCACCTCCCTGACGACTTGCTGCTCCGCATATCACGCGC
GCTTATGTGCGACGACGGCACACAGAAAGCACACAATCTGCGCGACCTAT
GGAATTTTGCAATCACGTGCAGAAGAATGCATGCGATGGCGATGAAGATG
ATGTCTGAGTTGCGAACCACAAGCGTGTTGGCGGAAGAAAGTGTGCTTTA
CAACGTGGTTACGACGACGCCCGACGACGTGGTACAGGGCACGCTGCTCG
CGCTGCGCGCCGGCAGCGACGGCGCCGCTTTGAGCACATTGCGCTCATTG
CGACTGTGCGCCATGGCGCGCGACCAACTGCAGCCCGCTTTGCAGCGGCT
GCGCGCTTGTGTGAAGCTCACAACACTGTGCTTCGTGGATGTGGAAGGGG
GCGTCAGAGTGCCTGATGAAGTAGCGCGCCGCGTGCAGATGCTTTCCATC
ATGGTACCGCGTGTGCTAACCATGCAAGCGCTGCACAAAGCGCGATGTGC
ACCGAAGACGATTTTGCTTTGTTGCGTGGACGACCACACGGCATGGGAGT
TGCCCAAGCTGTGGGATGAACTGACGCGTGAGAGCAAAAGAGTTGACGTG
TCGTGGTCAGGCGACTTGGTGTGCAGGTATGATAATGACTTCTGGGGTAA
TTGGTACCTAAGCGAGAGACAGCATGAAGATAACGCTTCATACGTGTATT
CGGGACGCCGTATGGTGCCATTTGGGCCTCCATACGCGTCGACCATGAGC
TCTATCCCCATGTATAGTTGCGGGACAGTGCAGTTGAGCACGTGGGTTTC
GGAAAGGATGAATGATTTGCCGGTGGAAGAGATTTTCTTTGAAGAAGATG
ATTTGTTGGTAGTAGAAGTGGACACATCACCCATAGCCAAGGCACTGCTA
CGGCAAGGAGCACTGATGTCTGGCGTTGTGCATAGTATGCTGCGTGACTG
TATCCGGGGTGCGTTTAGGCTGCTGATCTTCACGCGACGGCCATTTGACG
AAGAGAGTGAGCAAGTAATGCCAAAAGCAGGCGCAAAGCTGGCAGCCTTA
GCGGCGTCTGTTGGAGGCGTGCGCGAGCTGCTAGTGAGCCCGTCGGTTTT
CGTAGCCCTCAAGGACGTTGTGCTGCCGGCCACCGTGAGCAGCGTGGGCG
TGGTGGGCTACTTTACGTATCCCAACTTTGTGCGCGAGCTGCCCGCGACG
CTGTTGGCTCTGGCGCGCGGCAGGGCGGCGGCGAAGCAACGATCGGTTTG
GATGCAGCAAATGCAGCTGCGCGAAGAGAGCGACGACTTGTGCACGGAGG
CGATGCTGCGGCGCGCGCAAGCGGCTTGTCGACGCGCGGAGACGGCGGGG
CTGTGTGCCGCGGGCGTGCGCGGCACGGTGGAGCAGTGGCTCCGTGACAG
AGCTGGCTAG

protein sequence of Ggra3246.t1

>Ggra3246.t1 ID=Ggra3246.t1|Name=Ggra3246.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=470bp
MRLPHLPDDLLLRISRALMCDDGTQKAHNLRDLWNFAITCRRMHAMAMKM
MSELRTTSVLAEESVLYNVVTTTPDDVVQGTLLALRAGSDGAALSTLRSL
RLCAMARDQLQPALQRLRACVKLTTLCFVDVEGGVRVPDEVARRVQMLSI
MVPRVLTMQALHKARCAPKTILLCCVDDHTAWELPKLWDELTRESKRVDV
SWSGDLVCRYDNDFWGNWYLSERQHEDNASYVYSGRRMVPFGPPYASTMS
SIPMYSCGTVQLSTWVSERMNDLPVEEIFFEEDDLLVVEVDTSPIAKALL
RQGALMSGVVHSMLRDCIRGAFRLLIFTRRPFDEESEQVMPKAGAKLAAL
AASVGGVRELLVSPSVFVALKDVVLPATVSSVGVVGYFTYPNFVRELPAT
LLALARGRAAAKQRSVWMQQMQLREESDDLCTEAMLRRAQAACRRAETAG
LCAAGVRGTVEQWLRDRAG*

mRNA from alignment at tig00000922_pilon:168452..169861+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3246.t1 ID=Ggra3246.t1|Name=Ggra3246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000922_pilon:168452..169861+ (Gracilaria gracilis GNS1m male)
ATGCGACTTCCGCACCTCCCTGACGACTTGCTGCTCCGCATATCACGCGC
GCTTATGTGCGACGACGGCACACAGAAAGCACACAATCTGCGCGACCTAT
GGAATTTTGCAATCACGTGCAGAAGAATGCATGCGATGGCGATGAAGATG
ATGTCTGAGTTGCGAACCACAAGCGTGTTGGCGGAAGAAAGTGTGCTTTA
CAACGTGGTTACGACGACGCCCGACGACGTGGTACAGGGCACGCTGCTCG
CGCTGCGCGCCGGCAGCGACGGCGCCGCTTTGAGCACATTGCGCTCATTG
CGACTGTGCGCCATGGCGCGCGACCAACTGCAGCCCGCTTTGCAGCGGCT
GCGCGCTTGTGTGAAGCTCACAACACTGTGCTTCGTGGATGTGGAAGGGG
GCGTCAGAGTGCCTGATGAAGTAGCGCGCCGCGTGCAGATGCTTTCCATC
ATGGTACCGCGTGTGCTAACCATGCAAGCGCTGCACAAAGCGCGATGTGC
ACCGAAGACGATTTTGCTTTGTTGCGTGGACGACCACACGGCATGGGAGT
TGCCCAAGCTGTGGGATGAACTGACGCGTGAGAGCAAAAGAGTTGACGTG
TCGTGGTCAGGCGACTTGGTGTGCAGGTATGATAATGACTTCTGGGGTAA
TTGGTACCTAAGCGAGAGACAGCATGAAGATAACGCTTCATACGTGTATT
CGGGACGCCGTATGGTGCCATTTGGGCCTCCATACGCGTCGACCATGAGC
TCTATCCCCATGTATAGTTGCGGGACAGTGCAGTTGAGCACGTGGGTTTC
GGAAAGGATGAATGATTTGCCGGTGGAAGAGATTTTCTTTGAAGAAGATG
ATTTGTTGGTAGTAGAAGTGGACACATCACCCATAGCCAAGGCACTGCTA
CGGCAAGGAGCACTGATGTCTGGCGTTGTGCATAGTATGCTGCGTGACTG
TATCCGGGGTGCGTTTAGGCTGCTGATCTTCACGCGACGGCCATTTGACG
AAGAGAGTGAGCAAGTAATGCCAAAAGCAGGCGCAAAGCTGGCAGCCTTA
GCGGCGTCTGTTGGAGGCGTGCGCGAGCTGCTAGTGAGCCCGTCGGTTTT
CGTAGCCCTCAAGGACGTTGTGCTGCCGGCCACCGTGAGCAGCGTGGGCG
TGGTGGGCTACTTTACGTATCCCAACTTTGTGCGCGAGCTGCCCGCGACG
CTGTTGGCTCTGGCGCGCGGCAGGGCGGCGGCGAAGCAACGATCGGTTTG
GATGCAGCAAATGCAGCTGCGCGAAGAGAGCGACGACTTGTGCACGGAGG
CGATGCTGCGGCGCGCGCAAGCGGCTTGTCGACGCGCGGAGACGGCGGGG
CTGTGTGCCGCGGGCGTGCGCGGCACGGTGGAGCAGTGGCTCCGTGACAG
AGCTGGCTAG

Coding sequence (CDS) from alignment at tig00000922_pilon:168452..169861+

>Ggra3246.t1 ID=Ggra3246.t1|Name=Ggra3246.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1410bp|location=Sequence derived from alignment at tig00000922_pilon:168452..169861+ (Gracilaria gracilis GNS1m male)
ATGCGACTTCCGCACCTCCCTGACGACTTGCTGCTCCGCATATCACGCGC
GCTTATGTGCGACGACGGCACACAGAAAGCACACAATCTGCGCGACCTAT
GGAATTTTGCAATCACGTGCAGAAGAATGCATGCGATGGCGATGAAGATG
ATGTCTGAGTTGCGAACCACAAGCGTGTTGGCGGAAGAAAGTGTGCTTTA
CAACGTGGTTACGACGACGCCCGACGACGTGGTACAGGGCACGCTGCTCG
CGCTGCGCGCCGGCAGCGACGGCGCCGCTTTGAGCACATTGCGCTCATTG
CGACTGTGCGCCATGGCGCGCGACCAACTGCAGCCCGCTTTGCAGCGGCT
GCGCGCTTGTGTGAAGCTCACAACACTGTGCTTCGTGGATGTGGAAGGGG
GCGTCAGAGTGCCTGATGAAGTAGCGCGCCGCGTGCAGATGCTTTCCATC
ATGGTACCGCGTGTGCTAACCATGCAAGCGCTGCACAAAGCGCGATGTGC
ACCGAAGACGATTTTGCTTTGTTGCGTGGACGACCACACGGCATGGGAGT
TGCCCAAGCTGTGGGATGAACTGACGCGTGAGAGCAAAAGAGTTGACGTG
TCGTGGTCAGGCGACTTGGTGTGCAGGTATGATAATGACTTCTGGGGTAA
TTGGTACCTAAGCGAGAGACAGCATGAAGATAACGCTTCATACGTGTATT
CGGGACGCCGTATGGTGCCATTTGGGCCTCCATACGCGTCGACCATGAGC
TCTATCCCCATGTATAGTTGCGGGACAGTGCAGTTGAGCACGTGGGTTTC
GGAAAGGATGAATGATTTGCCGGTGGAAGAGATTTTCTTTGAAGAAGATG
ATTTGTTGGTAGTAGAAGTGGACACATCACCCATAGCCAAGGCACTGCTA
CGGCAAGGAGCACTGATGTCTGGCGTTGTGCATAGTATGCTGCGTGACTG
TATCCGGGGTGCGTTTAGGCTGCTGATCTTCACGCGACGGCCATTTGACG
AAGAGAGTGAGCAAGTAATGCCAAAAGCAGGCGCAAAGCTGGCAGCCTTA
GCGGCGTCTGTTGGAGGCGTGCGCGAGCTGCTAGTGAGCCCGTCGGTTTT
CGTAGCCCTCAAGGACGTTGTGCTGCCGGCCACCGTGAGCAGCGTGGGCG
TGGTGGGCTACTTTACGTATCCCAACTTTGTGCGCGAGCTGCCCGCGACG
CTGTTGGCTCTGGCGCGCGGCAGGGCGGCGGCGAAGCAACGATCGGTTTG
GATGCAGCAAATGCAGCTGCGCGAAGAGAGCGACGACTTGTGCACGGAGG
CGATGCTGCGGCGCGCGCAAGCGGCTTGTCGACGCGCGGAGACGGCGGGG
CTGTGTGCCGCGGGCGTGCGCGGCACGGTGGAGCAGTGGCTCCGTGACAG
AGCTGGCTAG