Ggra3244.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3244.t1
Unique Name	Ggra3244.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000922_pilon	contig	tig00000922_pilon:164579..165916 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3244	Ggra3244	Gracilaria gracilis GNS1m male	gene	tig00000922_pilon 164579..165916 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3244.t1.stop1	Ggra3244.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000922_pilon 164579..164581 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3244.t1.CDS1	Ggra3244.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000922_pilon 164579..165916 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3244.t1.exon1	Ggra3244.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000922_pilon 164579..165916 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3244.t1.start1	Ggra3244.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000922_pilon 165914..165916 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3244.t1	Ggra3244.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000922_pilon 164579..165916 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000922_pilon:164579..165916-
coding sequence from alignment at tig00000922_pilon:164579..165916-

mRNA sequence

>Ggra3244.t1 ID=Ggra3244.t1|Name=Ggra3244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=446bp
MAAKIPKEIFDIPLFTCLHSFNQPYAESVIHGLADIVDCVGKQKFQVEAL
ILRQIHNADAEHFKTTPFCLSRKFEQVCTGLAEGSLRVFAISYKHDVRGG
GEGLRRKRMLDSKAQSIASAMAEIVVRDGISSITFWLDQILGQRRPRAER
NWVREGLLPYAVFEVLVSSYTEKERGAWLEVEMLLAGIYTTPRAVGNCTL
LKRWRNGGGPSDLMVAASGILRGRIAHLRGRPEDKEEIMGWALNTLDMSE
IHKASGSHTKGDPRRQFTVPFLKEPCISEHNLDSIVMNITVDNTREKWRS
IWGWGKHWNTGLAFVDPSAKAFVKTSAHKFKVRHIRTCVVTLNVSNVWLF
VLFIRCSGRPSKVVLLVTDTSSLRGGRVHKYKLLEFDVLQDSQARQVSHL
SDSEIAIRWDEIGSSVRELGYDVLFPQKEIESDVALIASHQMQNG*

spliced messenger RNA

>Ggra3244.t1 ID=Ggra3244.t1|Name=Ggra3244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00000922_pilon:164579..165916- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCAAAGATTCCGAAGGAGATATTCGACATTCCTCTCTTCACTTG
TCTGCACAGTTTCAATCAACCGTATGCCGAGTCTGTCATCCATGGCCTCG
CGGATATAGTCGATTGCGTCGGGAAGCAAAAGTTTCAGGTGGAAGCCCTC
ATCTTGCGTCAAATTCACAACGCCGATGCTGAGCACTTCAAAACGACACC
CTTCTGCCTTTCGCGCAAATTCGAGCAAGTATGCACGGGCCTTGCAGAAG
GCAGCTTGCGAGTGTTTGCAATTTCGTACAAGCACGATGTACGCGGTGGT
GGGGAGGGTTTGCGCCGCAAACGTATGCTTGATTCTAAAGCGCAGTCCAT
TGCAAGCGCGATGGCGGAGATCGTCGTGAGGGATGGGATCTCGAGCATCA
CATTCTGGCTTGACCAGATCCTTGGACAGCGTCGACCACGCGCTGAGCGT
AACTGGGTTCGAGAAGGCTTGCTGCCTTACGCTGTGTTTGAGGTGCTGGT
GTCGTCGTACACGGAAAAGGAGCGCGGGGCATGGCTAGAAGTTGAGATGC
TGCTGGCAGGAATTTACACGACACCGAGGGCGGTGGGCAACTGTACGCTC
CTAAAGAGGTGGAGAAATGGCGGAGGTCCGTCCGATTTGATGGTCGCCGC
CAGTGGCATTCTACGGGGCCGCATCGCCCACTTGCGCGGAAGGCCTGAAG
ATAAGGAGGAAATTATGGGATGGGCGTTGAACACGCTTGATATGAGCGAG
ATTCACAAAGCGTCCGGTTCACACACGAAGGGAGATCCTAGACGCCAATT
CACCGTTCCGTTTCTAAAAGAGCCTTGCATTAGCGAACACAACCTTGATT
CTATCGTGATGAACATTACTGTGGACAATACTCGGGAAAAATGGCGGTCG
ATTTGGGGCTGGGGAAAGCACTGGAATACCGGGTTGGCATTTGTGGATCC
CTCGGCGAAAGCGTTCGTGAAAACTTCGGCACATAAGTTTAAGGTAAGAC
ATATCAGAACATGTGTGGTGACGCTCAACGTTTCAAATGTTTGGTTGTTC
GTGCTGTTCATTCGTTGCTCTGGGCGGCCATCGAAAGTGGTACTTCTGGT
AACGGACACGAGTAGCCTGCGCGGAGGACGCGTTCACAAGTACAAGTTGC
TAGAATTCGACGTGCTGCAGGACTCACAGGCTCGTCAAGTTTCGCATTTG
TCGGACAGCGAAATAGCAATTCGATGGGACGAGATCGGTAGCAGCGTGCG
GGAGCTGGGATACGACGTGCTTTTCCCGCAAAAAGAGATTGAAAGCGATG
TTGCTCTAATTGCTTCGCACCAAATGCAAAATGGATGA

protein sequence of Ggra3244.t1

>Ggra3244.t1 ID=Ggra3244.t1|Name=Ggra3244.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=446bp
MAAKIPKEIFDIPLFTCLHSFNQPYAESVIHGLADIVDCVGKQKFQVEAL
ILRQIHNADAEHFKTTPFCLSRKFEQVCTGLAEGSLRVFAISYKHDVRGG
GEGLRRKRMLDSKAQSIASAMAEIVVRDGISSITFWLDQILGQRRPRAER
NWVREGLLPYAVFEVLVSSYTEKERGAWLEVEMLLAGIYTTPRAVGNCTL
LKRWRNGGGPSDLMVAASGILRGRIAHLRGRPEDKEEIMGWALNTLDMSE
IHKASGSHTKGDPRRQFTVPFLKEPCISEHNLDSIVMNITVDNTREKWRS
IWGWGKHWNTGLAFVDPSAKAFVKTSAHKFKVRHIRTCVVTLNVSNVWLF
VLFIRCSGRPSKVVLLVTDTSSLRGGRVHKYKLLEFDVLQDSQARQVSHL
SDSEIAIRWDEIGSSVRELGYDVLFPQKEIESDVALIASHQMQNG*

mRNA from alignment at tig00000922_pilon:164579..165916-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3244.t1 ID=Ggra3244.t1|Name=Ggra3244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00000922_pilon:164579..165916- (Gracilaria gracilis GNS1m male)
ATGGCCGCAAAGATTCCGAAGGAGATATTCGACATTCCTCTCTTCACTTG
TCTGCACAGTTTCAATCAACCGTATGCCGAGTCTGTCATCCATGGCCTCG
CGGATATAGTCGATTGCGTCGGGAAGCAAAAGTTTCAGGTGGAAGCCCTC
ATCTTGCGTCAAATTCACAACGCCGATGCTGAGCACTTCAAAACGACACC
CTTCTGCCTTTCGCGCAAATTCGAGCAAGTATGCACGGGCCTTGCAGAAG
GCAGCTTGCGAGTGTTTGCAATTTCGTACAAGCACGATGTACGCGGTGGT
GGGGAGGGTTTGCGCCGCAAACGTATGCTTGATTCTAAAGCGCAGTCCAT
TGCAAGCGCGATGGCGGAGATCGTCGTGAGGGATGGGATCTCGAGCATCA
CATTCTGGCTTGACCAGATCCTTGGACAGCGTCGACCACGCGCTGAGCGT
AACTGGGTTCGAGAAGGCTTGCTGCCTTACGCTGTGTTTGAGGTGCTGGT
GTCGTCGTACACGGAAAAGGAGCGCGGGGCATGGCTAGAAGTTGAGATGC
TGCTGGCAGGAATTTACACGACACCGAGGGCGGTGGGCAACTGTACGCTC
CTAAAGAGGTGGAGAAATGGCGGAGGTCCGTCCGATTTGATGGTCGCCGC
CAGTGGCATTCTACGGGGCCGCATCGCCCACTTGCGCGGAAGGCCTGAAG
ATAAGGAGGAAATTATGGGATGGGCGTTGAACACGCTTGATATGAGCGAG
ATTCACAAAGCGTCCGGTTCACACACGAAGGGAGATCCTAGACGCCAATT
CACCGTTCCGTTTCTAAAAGAGCCTTGCATTAGCGAACACAACCTTGATT
CTATCGTGATGAACATTACTGTGGACAATACTCGGGAAAAATGGCGGTCG
ATTTGGGGCTGGGGAAAGCACTGGAATACCGGGTTGGCATTTGTGGATCC
CTCGGCGAAAGCGTTCGTGAAAACTTCGGCACATAAGTTTAAGGTAAGAC
ATATCAGAACATGTGTGGTGACGCTCAACGTTTCAAATGTTTGGTTGTTC
GTGCTGTTCATTCGTTGCTCTGGGCGGCCATCGAAAGTGGTACTTCTGGT
AACGGACACGAGTAGCCTGCGCGGAGGACGCGTTCACAAGTACAAGTTGC
TAGAATTCGACGTGCTGCAGGACTCACAGGCTCGTCAAGTTTCGCATTTG
TCGGACAGCGAAATAGCAATTCGATGGGACGAGATCGGTAGCAGCGTGCG
GGAGCTGGGATACGACGTGCTTTTCCCGCAAAAAGAGATTGAAAGCGATG
TTGCTCTAATTGCTTCGCACCAAATGCAAAATGGATGA

Coding sequence (CDS) from alignment at tig00000922_pilon:164579..165916-

>Ggra3244.t1 ID=Ggra3244.t1|Name=Ggra3244.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1338bp|location=Sequence derived from alignment at tig00000922_pilon:164579..165916- (Gracilaria gracilis GNS1m male)
ATGGCCGCAAAGATTCCGAAGGAGATATTCGACATTCCTCTCTTCACTTG
TCTGCACAGTTTCAATCAACCGTATGCCGAGTCTGTCATCCATGGCCTCG
CGGATATAGTCGATTGCGTCGGGAAGCAAAAGTTTCAGGTGGAAGCCCTC
ATCTTGCGTCAAATTCACAACGCCGATGCTGAGCACTTCAAAACGACACC
CTTCTGCCTTTCGCGCAAATTCGAGCAAGTATGCACGGGCCTTGCAGAAG
GCAGCTTGCGAGTGTTTGCAATTTCGTACAAGCACGATGTACGCGGTGGT
GGGGAGGGTTTGCGCCGCAAACGTATGCTTGATTCTAAAGCGCAGTCCAT
TGCAAGCGCGATGGCGGAGATCGTCGTGAGGGATGGGATCTCGAGCATCA
CATTCTGGCTTGACCAGATCCTTGGACAGCGTCGACCACGCGCTGAGCGT
AACTGGGTTCGAGAAGGCTTGCTGCCTTACGCTGTGTTTGAGGTGCTGGT
GTCGTCGTACACGGAAAAGGAGCGCGGGGCATGGCTAGAAGTTGAGATGC
TGCTGGCAGGAATTTACACGACACCGAGGGCGGTGGGCAACTGTACGCTC
CTAAAGAGGTGGAGAAATGGCGGAGGTCCGTCCGATTTGATGGTCGCCGC
CAGTGGCATTCTACGGGGCCGCATCGCCCACTTGCGCGGAAGGCCTGAAG
ATAAGGAGGAAATTATGGGATGGGCGTTGAACACGCTTGATATGAGCGAG
ATTCACAAAGCGTCCGGTTCACACACGAAGGGAGATCCTAGACGCCAATT
CACCGTTCCGTTTCTAAAAGAGCCTTGCATTAGCGAACACAACCTTGATT
CTATCGTGATGAACATTACTGTGGACAATACTCGGGAAAAATGGCGGTCG
ATTTGGGGCTGGGGAAAGCACTGGAATACCGGGTTGGCATTTGTGGATCC
CTCGGCGAAAGCGTTCGTGAAAACTTCGGCACATAAGTTTAAGGTAAGAC
ATATCAGAACATGTGTGGTGACGCTCAACGTTTCAAATGTTTGGTTGTTC
GTGCTGTTCATTCGTTGCTCTGGGCGGCCATCGAAAGTGGTACTTCTGGT
AACGGACACGAGTAGCCTGCGCGGAGGACGCGTTCACAAGTACAAGTTGC
TAGAATTCGACGTGCTGCAGGACTCACAGGCTCGTCAAGTTTCGCATTTG
TCGGACAGCGAAATAGCAATTCGATGGGACGAGATCGGTAGCAGCGTGCG
GGAGCTGGGATACGACGTGCTTTTCCCGCAAAAAGAGATTGAAAGCGATG
TTGCTCTAATTGCTTCGCACCAAATGCAAAATGGATGA