Ggra3234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3234.t1
Unique NameGgra3234.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:136749..137345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3234Ggra3234Gracilaria gracilis GNS1m malegenetig00000922_pilon 136749..137345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1Ggra3234.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 136749..137345 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1.start1Ggra3234.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 136749..136751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1.CDS1Ggra3234.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 136749..136856 +
Ggra3234.t1.CDS2Ggra3234.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000922_pilon 136944..137345 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1.exon1Ggra3234.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 136749..136856 +
Ggra3234.t1.exon2Ggra3234.t1.exon2Gracilaria gracilis GNS1m maleexontig00000922_pilon 136944..137345 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1.intron1Ggra3234.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000922_pilon 136857..136943 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3234.t1.stop1Ggra3234.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 137343..137345 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3234.t1 ID=Ggra3234.t1|Name=Ggra3234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=170bp
MSPSHQPPHRPSNSSSLDALIGIIPMCNSCRTRPAYKSPSGNVYAVCREC
RRSSEAAVPSSSSQDVAANSFAQEMARSSRSSQPRHSSSSSRQPSSSSLP
SSPLSRQQSSASAASPTLPSSQSSSRHGSSTRTGSSSQQHKSKRHSSSKK
GAHDGDGSSSASSSSRSKK*
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spliced messenger RNA

>Ggra3234.t1 ID=Ggra3234.t1|Name=Ggra3234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00000922_pilon:136749..137345+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTCCCACCAACCCCCACATAGGCCCAGTAATTCCAGCTCGTT
AGACGCCTTGATCGGCATCATTCCCATGTGCAACAGCTGTCGAACTCGCC
CTGCATATAAATCGCCCAGTGGTAATGTTTACGCGGTTTGTAGGGAGTGT
CGGCGCAGTAGTGAGGCTGCCGTCCCTTCGTCTTCGTCGCAGGATGTGGC
TGCAAACAGTTTTGCTCAGGAGATGGCACGCTCATCGCGCTCATCACAGC
CTCGGCACTCGTCTTCTTCTTCGAGGCAGCCCTCTTCATCGTCGCTGCCC
TCTTCGCCTCTGTCGCGACAGCAATCCTCTGCTTCTGCTGCTTCTCCTAC
GCTACCTTCGTCGCAGTCGTCGTCGCGACATGGCTCGTCAACGCGTACTG
GCAGTTCGTCACAACAGCACAAGAGCAAGCGTCATTCTTCCTCCAAAAAG
GGTGCCCATGATGGAGATGGCTCAAGTAGCGCCTCCAGCTCATCTAGGTC
TAAGAAATGA
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protein sequence of Ggra3234.t1

>Ggra3234.t1 ID=Ggra3234.t1|Name=Ggra3234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MSPSHQPPHRPSNSSSLDALIGIIPMCNSCRTRPAYKSPSGNVYAVCREC
RRSSEAAVPSSSSQDVAANSFAQEMARSSRSSQPRHSSSSSRQPSSSSLP
SSPLSRQQSSASAASPTLPSSQSSSRHGSSTRTGSSSQQHKSKRHSSSKK
GAHDGDGSSSASSSSRSKK*
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mRNA from alignment at tig00000922_pilon:136749..137345+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3234.t1 ID=Ggra3234.t1|Name=Ggra3234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000922_pilon:136749..137345+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGTCCCACCAACCCCCACATAGGCCCAGTAATTCCAGCTCGTT
AGACGCCTTGATCGGCATCATTCCCATGTGCAACAGCTGTCGAACTCGCC
CTGCATATGTAAGTTCTGCCAGCTTGCGTTTTCTGCGTTGCGCGCTATTG
CAGCTCTAACTTGCCAATTCCTCCTGCTGTATGCGCTCTTTCAAGAAATC
GCCCAGTGGTAATGTTTACGCGGTTTGTAGGGAGTGTCGGCGCAGTAGTG
AGGCTGCCGTCCCTTCGTCTTCGTCGCAGGATGTGGCTGCAAACAGTTTT
GCTCAGGAGATGGCACGCTCATCGCGCTCATCACAGCCTCGGCACTCGTC
TTCTTCTTCGAGGCAGCCCTCTTCATCGTCGCTGCCCTCTTCGCCTCTGT
CGCGACAGCAATCCTCTGCTTCTGCTGCTTCTCCTACGCTACCTTCGTCG
CAGTCGTCGTCGCGACATGGCTCGTCAACGCGTACTGGCAGTTCGTCACA
ACAGCACAAGAGCAAGCGTCATTCTTCCTCCAAAAAGGGTGCCCATGATG
GAGATGGCTCAAGTAGCGCCTCCAGCTCATCTAGGTCTAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000922_pilon:136749..137345+

>Ggra3234.t1 ID=Ggra3234.t1|Name=Ggra3234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00000922_pilon:136749..137345+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGTCCCACCAACCCCCACATAGGCCCAGTAATTCCAGCTCGTT
AGACGCCTTGATCGGCATCATTCCCATGTGCAACAGCTGTCGAACTCGCC
CTGCATATAAATCGCCCAGTGGTAATGTTTACGCGGTTTGTAGGGAGTGT
CGGCGCAGTAGTGAGGCTGCCGTCCCTTCGTCTTCGTCGCAGGATGTGGC
TGCAAACAGTTTTGCTCAGGAGATGGCACGCTCATCGCGCTCATCACAGC
CTCGGCACTCGTCTTCTTCTTCGAGGCAGCCCTCTTCATCGTCGCTGCCC
TCTTCGCCTCTGTCGCGACAGCAATCCTCTGCTTCTGCTGCTTCTCCTAC
GCTACCTTCGTCGCAGTCGTCGTCGCGACATGGCTCGTCAACGCGTACTG
GCAGTTCGTCACAACAGCACAAGAGCAAGCGTCATTCTTCCTCCAAAAAG
GGTGCCCATGATGGAGATGGCTCAAGTAGCGCCTCCAGCTCATCTAGGTC
TAAGAAATGA
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