Ggra3217.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3217.t1
Unique NameGgra3217.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:99776..100524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703279.1
Preferred nameUBE2V2
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG koko:K03164,ko:K10704,ko:K20656
KEGG Pathwayko01524,ko04624,map01524,map04624
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000726,GO:0000729,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006355,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030522,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033674,GO:0034097,GO:0034622,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040012,GO:0042176,GO:0042221,GO:0042275,GO:0042325,GO:0042327,GO:0042592,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043524,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045739,GO:0045859,GO:0045860,GO:0045862,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050803,GO:0050807,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051338,GO:0051347,GO:0051403,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0061057,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090325,GO:0097458,GO:0098542,GO:0120025,GO:0120035,GO:0140096,GO:1901214,GO:1901215,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903827,GO:1990234,GO:2000008,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001020,GO:2001022,GO:2001141
Evalue6.7e-68
EggNOG OGsKOG0896@1|root,KOG0896@2759|Eukaryota
EC5.99.1.3
Descriptionprotein K63-linked ubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3217Ggra3217Gracilaria gracilis GNS1m malegenetig00000922_pilon 99776..100524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1Ggra3217.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 99776..100524 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1.stop1Ggra3217.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 99776..99778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1.CDS1Ggra3217.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 99776..100042 -
Ggra3217.t1.CDS2Ggra3217.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000922_pilon 100260..100399 -
Ggra3217.t1.CDS3Ggra3217.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000922_pilon 100482..100524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1.exon1Ggra3217.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 99776..100042 -
Ggra3217.t1.exon2Ggra3217.t1.exon2Gracilaria gracilis GNS1m maleexontig00000922_pilon 100260..100399 -
Ggra3217.t1.exon3Ggra3217.t1.exon3Gracilaria gracilis GNS1m maleexontig00000922_pilon 100482..100524 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1.intron1Ggra3217.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000922_pilon 100043..100259 -
Ggra3217.t1.intron2Ggra3217.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000922_pilon 100400..100481 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3217.t1.start1Ggra3217.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 100522..100524 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3217.t1 ID=Ggra3217.t1|Name=Ggra3217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=150bp
MNSRSRIVSESSVEVPRSFRLLEELERGEHGVGDGSVSYGLKDADDITLS
RWNGTILGPINTVFENKIFALSIVCGEKYPSQPPSIRFITKINMHSVSRH
TGNVDPARCHILRNWSRNYGIETLLLELRKEMASSHNRRLPQPPEGTEF*
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spliced messenger RNA

>Ggra3217.t1 ID=Ggra3217.t1|Name=Ggra3217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000922_pilon:99776..100524- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTCGATCACGCATTGTCAGTGAGTCCTCGGTCGAAGTCCCGCG
CAGCTTTCGTCTACTGGAGGAATTAGAGCGCGGCGAGCATGGAGTGGGTG
ACGGCTCAGTTAGCTACGGCTTGAAGGATGCCGATGACATTACGCTCTCT
AGATGGAATGGTACAATTCTCGGTCCCATAAACACCGTATTCGAGAACAA
AATATTCGCGCTTTCTATCGTCTGCGGCGAAAAGTACCCTAGTCAACCTC
CCTCAATTCGCTTTATCACCAAGATCAACATGCACTCTGTATCAAGGCAC
ACCGGCAATGTAGACCCCGCTCGTTGCCACATTCTGCGCAACTGGTCGCG
AAACTACGGTATCGAGACGCTGCTTCTTGAATTACGAAAGGAGATGGCGT
CGTCGCACAATCGTAGGCTGCCGCAACCGCCCGAGGGAACCGAGTTCTAG
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protein sequence of Ggra3217.t1

>Ggra3217.t1 ID=Ggra3217.t1|Name=Ggra3217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MNSRSRIVSESSVEVPRSFRLLEELERGEHGVGDGSVSYGLKDADDITLS
RWNGTILGPINTVFENKIFALSIVCGEKYPSQPPSIRFITKINMHSVSRH
TGNVDPARCHILRNWSRNYGIETLLLELRKEMASSHNRRLPQPPEGTEF*
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mRNA from alignment at tig00000922_pilon:99776..100524-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3217.t1 ID=Ggra3217.t1|Name=Ggra3217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=749bp|location=Sequence derived from alignment at tig00000922_pilon:99776..100524- (Gracilaria gracilis GNS1m male)
ATGAATTCTCGATCACGCATTGTCAGTGAGTCCTCGGTCGAAGGTAAGCT
CTTGTTCACCGCGTCGTCTTCCTTGCGTCCGTTGCGTTGCATGTTTCCGT
CGCTCTGACACTCCCATTCGCACAGTCCCGCGCAGCTTTCGTCTACTGGA
GGAATTAGAGCGCGGCGAGCATGGAGTGGGTGACGGCTCAGTTAGCTACG
GCTTGAAGGATGCCGATGACATTACGCTCTCTAGATGGAATGGTACAATT
CTCGGTCCCATAAACGTAAGCTTTCTCCTTTCTTCACTTTGCACGGCCGA
CACTGTTTTTGTTAAATGCGCCATGCCTGCAGTTCCGCCTTCCATGCAAA
ACAGGCACATCGGCTCTCAGTTCCTGTACCTGCGTGTGTAATGCCCACTG
CACGTCACGTCTATCGCACACAAGTCTAACCGCCACCGCTTCCACTCCTA
TAACCTCCTCGTTCGTATAACCTCCCATACAGACCGTATTCGAGAACAAA
ATATTCGCGCTTTCTATCGTCTGCGGCGAAAAGTACCCTAGTCAACCTCC
CTCAATTCGCTTTATCACCAAGATCAACATGCACTCTGTATCAAGGCACA
CCGGCAATGTAGACCCCGCTCGTTGCCACATTCTGCGCAACTGGTCGCGA
AACTACGGTATCGAGACGCTGCTTCTTGAATTACGAAAGGAGATGGCGTC
GTCGCACAATCGTAGGCTGCCGCAACCGCCCGAGGGAACCGAGTTCTAG
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Coding sequence (CDS) from alignment at tig00000922_pilon:99776..100524-

>Ggra3217.t1 ID=Ggra3217.t1|Name=Ggra3217.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000922_pilon:99776..100524- (Gracilaria gracilis GNS1m male)
ATGAATTCTCGATCACGCATTGTCAGTGAGTCCTCGGTCGAAGTCCCGCG
CAGCTTTCGTCTACTGGAGGAATTAGAGCGCGGCGAGCATGGAGTGGGTG
ACGGCTCAGTTAGCTACGGCTTGAAGGATGCCGATGACATTACGCTCTCT
AGATGGAATGGTACAATTCTCGGTCCCATAAACACCGTATTCGAGAACAA
AATATTCGCGCTTTCTATCGTCTGCGGCGAAAAGTACCCTAGTCAACCTC
CCTCAATTCGCTTTATCACCAAGATCAACATGCACTCTGTATCAAGGCAC
ACCGGCAATGTAGACCCCGCTCGTTGCCACATTCTGCGCAACTGGTCGCG
AAACTACGGTATCGAGACGCTGCTTCTTGAATTACGAAAGGAGATGGCGT
CGTCGCACAATCGTAGGCTGCCGCAACCGCCCGAGGGAACCGAGTTCTAG
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