Ggra3215.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3215.t1
Unique NameGgra3215.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:96371..98065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173264.KI913949_gene4229
Preferred nameprfC
PFAMsGTP_EFTU,GTP_EFTU_D2,RF3_C
Max annot lvl1117|Cyanobacteria
KEGG koko:K02837
Evalue6.27e-229
EggNOG OGsCOG4108@1|root,COG4108@2|Bacteria,1G0Y8@1117|Cyanobacteria,1H72K@1150|Oscillatoriales
DescriptionIncreases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3215Ggra3215Gracilaria gracilis GNS1m malegenetig00000922_pilon 96371..98065 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3215.t1.stop1Ggra3215.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 96371..96373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3215.t1.CDS1Ggra3215.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 96371..98065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3215.t1.exon1Ggra3215.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 96371..98065 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3215.t1.start1Ggra3215.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 98063..98065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3215.t1Ggra3215.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 96371..98065 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3215.t1 ID=Ggra3215.t1|Name=Ggra3215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp
MALLFLSASPLRSRPLQKRRRTFVCATAAPATPQIAHEVARRRNLAIISH
PDAGKSTLTEKLLLYGGAIQQAGAVRSRRAQRGVVSDSMAMEQERGISIT
SAVMTFEFQGKRINITDCPGHADFSEDTFRTLAAVDNAIMLIDAAKGLEP
QTRKLFEVCRMRTLPTFTFVNKMDRPAMSPFEIADQIEREFDLLTYPVVW
PVGDGDQFRGVFERSTRLVHLYERAKRGKKALSSAVSLGDSSLKSIIGDQ
LYHQLVEDAEILDEMGNEWDYEAVLNGDLTPMFFGSAMSNFGVELFLRSF
LELGRCPPSKESSTGLVAPDGERFTGQVFKLQANMDARHRDRLAFIRIFS
GKFEKGMKVNNARHGKTVALTRPQGLFAAERYTVDTAFAGDVIGLNNPGV
FAIGDTVYTGGKLSFPGIPSFSPELFAYIQNPNPSAYKNYRKGLNQLLDE
GAVQLLRAREDEGNEDPILAAVGQLQFEVVQRRLKDEYNVESRLEPMPYS
VARWVVGPGDPWEAIASCGRMFGVFCAKDRWDRPVLLFKNQWGLNNLLAD
HDVQLKPWAFAPEE*
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spliced messenger RNA

>Ggra3215.t1 ID=Ggra3215.t1|Name=Ggra3215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000922_pilon:96371..98065- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCCTCTTTCTCAGCGCTTCACCGCTCCGCAGTCGCCCCCTCCA
GAAGCGCAGAAGAACCTTCGTCTGCGCCACCGCCGCCCCTGCCACCCCAC
AAATCGCCCATGAAGTCGCTCGCCGCCGCAATCTCGCCATAATCTCCCAC
CCCGATGCCGGCAAGTCCACCCTCACCGAGAAGCTTCTGCTCTACGGCGG
CGCCATTCAGCAGGCCGGCGCTGTCCGCAGTCGCCGCGCTCAGAGAGGCG
TCGTGTCGGACAGTATGGCCATGGAGCAAGAGCGTGGCATCTCCATCACC
TCCGCCGTCATGACCTTCGAGTTCCAGGGTAAACGTATCAACATTACCGA
CTGTCCCGGCCATGCTGACTTTTCTGAGGATACATTCAGAACTCTGGCTG
CTGTAGACAACGCTATCATGCTCATCGACGCTGCAAAAGGTCTCGAACCT
CAAACCCGCAAACTGTTTGAGGTTTGCCGAATGCGCACATTGCCTACGTT
TACGTTCGTCAACAAGATGGACCGTCCCGCCATGAGCCCGTTTGAAATAG
CAGACCAGATCGAGCGTGAGTTCGACTTGCTTACCTACCCGGTCGTCTGG
CCAGTTGGCGATGGCGATCAGTTTCGTGGAGTCTTTGAGCGTTCGACGCG
GCTCGTGCACCTCTATGAGCGTGCTAAACGTGGAAAGAAAGCGCTTTCCA
GTGCAGTCTCTCTAGGCGACTCGTCCCTCAAATCGATAATTGGGGACCAG
CTGTACCATCAGCTCGTGGAGGACGCAGAGATTCTTGACGAAATGGGTAA
CGAATGGGACTATGAGGCCGTATTGAATGGTGACCTTACACCAATGTTTT
TCGGTTCCGCAATGTCCAATTTTGGTGTGGAGTTGTTTCTACGGTCTTTC
CTAGAACTTGGGCGCTGCCCACCTTCCAAAGAGAGTTCTACAGGGTTGGT
TGCCCCGGATGGTGAGCGCTTTACTGGGCAGGTCTTCAAACTACAGGCTA
ATATGGACGCTAGGCATCGTGATCGGCTTGCGTTCATCCGCATTTTTAGC
GGCAAATTTGAGAAAGGGATGAAGGTGAACAACGCACGACACGGGAAAAC
AGTTGCGCTTACCCGGCCACAGGGTTTATTCGCGGCAGAGCGGTATACAG
TTGATACAGCGTTTGCGGGCGATGTGATCGGACTCAACAATCCGGGCGTT
TTTGCGATAGGCGATACGGTTTATACGGGCGGCAAGCTAAGTTTTCCGGG
CATCCCAAGCTTTAGCCCTGAGCTCTTCGCATATATACAAAACCCGAATC
CATCAGCTTACAAGAACTACCGTAAAGGACTGAATCAATTGCTGGACGAG
GGTGCGGTACAACTACTGCGAGCCAGGGAGGATGAGGGAAATGAAGATCC
CATACTGGCGGCTGTGGGACAGCTGCAGTTCGAGGTAGTGCAACGACGAC
TTAAAGACGAATACAACGTCGAAAGCCGTTTAGAACCGATGCCATATTCC
GTAGCTAGATGGGTTGTGGGTCCCGGGGATCCTTGGGAAGCTATTGCAAG
CTGTGGCAGGATGTTTGGAGTCTTCTGCGCAAAGGATCGATGGGACCGGC
CTGTTCTGTTGTTCAAGAACCAGTGGGGATTGAATAATTTGCTTGCTGAT
CACGACGTGCAGCTCAAGCCCTGGGCGTTTGCACCAGAGGAATAA
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protein sequence of Ggra3215.t1

>Ggra3215.t1 ID=Ggra3215.t1|Name=Ggra3215.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MALLFLSASPLRSRPLQKRRRTFVCATAAPATPQIAHEVARRRNLAIISH
PDAGKSTLTEKLLLYGGAIQQAGAVRSRRAQRGVVSDSMAMEQERGISIT
SAVMTFEFQGKRINITDCPGHADFSEDTFRTLAAVDNAIMLIDAAKGLEP
QTRKLFEVCRMRTLPTFTFVNKMDRPAMSPFEIADQIEREFDLLTYPVVW
PVGDGDQFRGVFERSTRLVHLYERAKRGKKALSSAVSLGDSSLKSIIGDQ
LYHQLVEDAEILDEMGNEWDYEAVLNGDLTPMFFGSAMSNFGVELFLRSF
LELGRCPPSKESSTGLVAPDGERFTGQVFKLQANMDARHRDRLAFIRIFS
GKFEKGMKVNNARHGKTVALTRPQGLFAAERYTVDTAFAGDVIGLNNPGV
FAIGDTVYTGGKLSFPGIPSFSPELFAYIQNPNPSAYKNYRKGLNQLLDE
GAVQLLRAREDEGNEDPILAAVGQLQFEVVQRRLKDEYNVESRLEPMPYS
VARWVVGPGDPWEAIASCGRMFGVFCAKDRWDRPVLLFKNQWGLNNLLAD
HDVQLKPWAFAPEE*
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mRNA from alignment at tig00000922_pilon:96371..98065-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3215.t1 ID=Ggra3215.t1|Name=Ggra3215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000922_pilon:96371..98065- (Gracilaria gracilis GNS1m male)
ATGGCGCTCCTCTTTCTCAGCGCTTCACCGCTCCGCAGTCGCCCCCTCCA
GAAGCGCAGAAGAACCTTCGTCTGCGCCACCGCCGCCCCTGCCACCCCAC
AAATCGCCCATGAAGTCGCTCGCCGCCGCAATCTCGCCATAATCTCCCAC
CCCGATGCCGGCAAGTCCACCCTCACCGAGAAGCTTCTGCTCTACGGCGG
CGCCATTCAGCAGGCCGGCGCTGTCCGCAGTCGCCGCGCTCAGAGAGGCG
TCGTGTCGGACAGTATGGCCATGGAGCAAGAGCGTGGCATCTCCATCACC
TCCGCCGTCATGACCTTCGAGTTCCAGGGTAAACGTATCAACATTACCGA
CTGTCCCGGCCATGCTGACTTTTCTGAGGATACATTCAGAACTCTGGCTG
CTGTAGACAACGCTATCATGCTCATCGACGCTGCAAAAGGTCTCGAACCT
CAAACCCGCAAACTGTTTGAGGTTTGCCGAATGCGCACATTGCCTACGTT
TACGTTCGTCAACAAGATGGACCGTCCCGCCATGAGCCCGTTTGAAATAG
CAGACCAGATCGAGCGTGAGTTCGACTTGCTTACCTACCCGGTCGTCTGG
CCAGTTGGCGATGGCGATCAGTTTCGTGGAGTCTTTGAGCGTTCGACGCG
GCTCGTGCACCTCTATGAGCGTGCTAAACGTGGAAAGAAAGCGCTTTCCA
GTGCAGTCTCTCTAGGCGACTCGTCCCTCAAATCGATAATTGGGGACCAG
CTGTACCATCAGCTCGTGGAGGACGCAGAGATTCTTGACGAAATGGGTAA
CGAATGGGACTATGAGGCCGTATTGAATGGTGACCTTACACCAATGTTTT
TCGGTTCCGCAATGTCCAATTTTGGTGTGGAGTTGTTTCTACGGTCTTTC
CTAGAACTTGGGCGCTGCCCACCTTCCAAAGAGAGTTCTACAGGGTTGGT
TGCCCCGGATGGTGAGCGCTTTACTGGGCAGGTCTTCAAACTACAGGCTA
ATATGGACGCTAGGCATCGTGATCGGCTTGCGTTCATCCGCATTTTTAGC
GGCAAATTTGAGAAAGGGATGAAGGTGAACAACGCACGACACGGGAAAAC
AGTTGCGCTTACCCGGCCACAGGGTTTATTCGCGGCAGAGCGGTATACAG
TTGATACAGCGTTTGCGGGCGATGTGATCGGACTCAACAATCCGGGCGTT
TTTGCGATAGGCGATACGGTTTATACGGGCGGCAAGCTAAGTTTTCCGGG
CATCCCAAGCTTTAGCCCTGAGCTCTTCGCATATATACAAAACCCGAATC
CATCAGCTTACAAGAACTACCGTAAAGGACTGAATCAATTGCTGGACGAG
GGTGCGGTACAACTACTGCGAGCCAGGGAGGATGAGGGAAATGAAGATCC
CATACTGGCGGCTGTGGGACAGCTGCAGTTCGAGGTAGTGCAACGACGAC
TTAAAGACGAATACAACGTCGAAAGCCGTTTAGAACCGATGCCATATTCC
GTAGCTAGATGGGTTGTGGGTCCCGGGGATCCTTGGGAAGCTATTGCAAG
CTGTGGCAGGATGTTTGGAGTCTTCTGCGCAAAGGATCGATGGGACCGGC
CTGTTCTGTTGTTCAAGAACCAGTGGGGATTGAATAATTTGCTTGCTGAT
CACGACGTGCAGCTCAAGCCCTGGGCGTTTGCACCAGAGGAATAA
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Coding sequence (CDS) from alignment at tig00000922_pilon:96371..98065-

>Ggra3215.t1 ID=Ggra3215.t1|Name=Ggra3215.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00000922_pilon:96371..98065- (Gracilaria gracilis GNS1m male)
ATGGCGCTCCTCTTTCTCAGCGCTTCACCGCTCCGCAGTCGCCCCCTCCA
GAAGCGCAGAAGAACCTTCGTCTGCGCCACCGCCGCCCCTGCCACCCCAC
AAATCGCCCATGAAGTCGCTCGCCGCCGCAATCTCGCCATAATCTCCCAC
CCCGATGCCGGCAAGTCCACCCTCACCGAGAAGCTTCTGCTCTACGGCGG
CGCCATTCAGCAGGCCGGCGCTGTCCGCAGTCGCCGCGCTCAGAGAGGCG
TCGTGTCGGACAGTATGGCCATGGAGCAAGAGCGTGGCATCTCCATCACC
TCCGCCGTCATGACCTTCGAGTTCCAGGGTAAACGTATCAACATTACCGA
CTGTCCCGGCCATGCTGACTTTTCTGAGGATACATTCAGAACTCTGGCTG
CTGTAGACAACGCTATCATGCTCATCGACGCTGCAAAAGGTCTCGAACCT
CAAACCCGCAAACTGTTTGAGGTTTGCCGAATGCGCACATTGCCTACGTT
TACGTTCGTCAACAAGATGGACCGTCCCGCCATGAGCCCGTTTGAAATAG
CAGACCAGATCGAGCGTGAGTTCGACTTGCTTACCTACCCGGTCGTCTGG
CCAGTTGGCGATGGCGATCAGTTTCGTGGAGTCTTTGAGCGTTCGACGCG
GCTCGTGCACCTCTATGAGCGTGCTAAACGTGGAAAGAAAGCGCTTTCCA
GTGCAGTCTCTCTAGGCGACTCGTCCCTCAAATCGATAATTGGGGACCAG
CTGTACCATCAGCTCGTGGAGGACGCAGAGATTCTTGACGAAATGGGTAA
CGAATGGGACTATGAGGCCGTATTGAATGGTGACCTTACACCAATGTTTT
TCGGTTCCGCAATGTCCAATTTTGGTGTGGAGTTGTTTCTACGGTCTTTC
CTAGAACTTGGGCGCTGCCCACCTTCCAAAGAGAGTTCTACAGGGTTGGT
TGCCCCGGATGGTGAGCGCTTTACTGGGCAGGTCTTCAAACTACAGGCTA
ATATGGACGCTAGGCATCGTGATCGGCTTGCGTTCATCCGCATTTTTAGC
GGCAAATTTGAGAAAGGGATGAAGGTGAACAACGCACGACACGGGAAAAC
AGTTGCGCTTACCCGGCCACAGGGTTTATTCGCGGCAGAGCGGTATACAG
TTGATACAGCGTTTGCGGGCGATGTGATCGGACTCAACAATCCGGGCGTT
TTTGCGATAGGCGATACGGTTTATACGGGCGGCAAGCTAAGTTTTCCGGG
CATCCCAAGCTTTAGCCCTGAGCTCTTCGCATATATACAAAACCCGAATC
CATCAGCTTACAAGAACTACCGTAAAGGACTGAATCAATTGCTGGACGAG
GGTGCGGTACAACTACTGCGAGCCAGGGAGGATGAGGGAAATGAAGATCC
CATACTGGCGGCTGTGGGACAGCTGCAGTTCGAGGTAGTGCAACGACGAC
TTAAAGACGAATACAACGTCGAAAGCCGTTTAGAACCGATGCCATATTCC
GTAGCTAGATGGGTTGTGGGTCCCGGGGATCCTTGGGAAGCTATTGCAAG
CTGTGGCAGGATGTTTGGAGTCTTCTGCGCAAAGGATCGATGGGACCGGC
CTGTTCTGTTGTTCAAGAACCAGTGGGGATTGAATAATTTGCTTGCTGAT
CACGACGTGCAGCTCAAGCCCTGGGCGTTTGCACCAGAGGAATAA
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