Ggra3212.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3212.t1
Unique Name	Ggra3212.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000922_pilon	contig	tig00000922_pilon:82482..84422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	796606.BMMGA3_15725
PFAMs	CHB_HEX_C_1,Exo_endo_phos
Max annot lvl	91061\|Bacilli
KEGG ko	ko:K07004
Evalue	2.46e-80
EggNOG OGs	COG2374@1\|root,COG4085@1\|root,COG2374@2\|Bacteria,COG4085@2\|Bacteria,1VKCH@1239\|Firmicutes,4IS9P@91061\|Bacilli,1ZS3V@1386\|Bacillus
Description	Endonuclease/Exonuclease/phosphatase family
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3212	Ggra3212	Gracilaria gracilis GNS1m male	gene	tig00000922_pilon 82482..84422 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3212.t1.stop1	Ggra3212.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000922_pilon 82482..82484 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3212.t1.CDS1	Ggra3212.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000922_pilon 82482..84422 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3212.t1.exon1	Ggra3212.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000922_pilon 82482..84422 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3212.t1.start1	Ggra3212.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000922_pilon 84420..84422 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3212.t1	Ggra3212.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000922_pilon 82482..84422 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000922_pilon:82482..84422-
coding sequence from alignment at tig00000922_pilon:82482..84422-

mRNA sequence

>Ggra3212.t1 ID=Ggra3212.t1|Name=Ggra3212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=647bp
MVRHVFFGLVLIVLFVKGIGHGLRSRCSFRSDCGAGQRCYRREYCHQPLY
IPPPASDFFYISEIQGPGTISPLVGNNVTTIGVVTAINNAARTPSIWLQD
LYEDEDPLTSEAIYLFRPTFVPQVVPEVGDVVEVRGTVEEFVPSSRPKDL
PVTELVDSEARIVGTVPLRYIKPVAFDPKPPLSSFGTGSGYEEDPEALRR
NLVDSNYTCATVRESAMCFYEAHEHMLVSIKGARTATAELRFGEIGVVSR
QLSLRLPMRRQSAVVNMKDFRPNVITVEDDLVPRGARNLTAGIDLKPFKG
VLFYSFSQYKVYNTEVLKRQRKTPFPIPLKSRCYHQKTNKRRLRLATWNL
ENRDPLDDEKGFRVIGQIISNHLCCPDILGLSEIGDNDGSNRTNVTSASI
TLQLLANVSNSACRISSYKFSDIDPLNLEDGGLPGENIRVAFLYRSDRVV
LAPGRQEGGPNDAVQIENGRLSLNPGRIAPSQFPNSRKPLAAEFEFVDRR
SRRVIVVMNHWNSKFGDDALFGRIQPPLQASQKKRLIQANAVRDFLHTVP
RNSTVVVMGDLNDFYFSTPVRTLALKNLWSTLPPNERYSFVFQSRLQTLD
HILVGGRCLRCGRLRVAHIATELPFGSPDRVSDHDGLMSTCRWICA*

spliced messenger RNA

>Ggra3212.t1 ID=Ggra3212.t1|Name=Ggra3212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000922_pilon:82482..84422- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGACACGTCTTCTTTGGTCTTGTTCTCATTGTGCTTTTTGTGAA
AGGTATTGGTCATGGATTACGCTCACGTTGTAGCTTTCGGAGCGATTGCG
GTGCCGGTCAGCGTTGTTATCGCCGAGAATATTGCCATCAGCCTCTGTAC
ATCCCCCCTCCAGCTAGCGACTTTTTCTACATCAGCGAAATTCAAGGTCC
GGGAACGATATCGCCGTTGGTTGGAAACAATGTCACAACTATAGGTGTCG
TGACTGCAATAAACAATGCGGCGCGTACACCGTCGATTTGGCTTCAAGAC
CTCTACGAAGATGAAGATCCCCTTACATCTGAAGCTATTTACTTGTTTCG
GCCCACCTTCGTCCCCCAAGTAGTTCCCGAAGTTGGCGATGTTGTGGAAG
TACGAGGGACCGTTGAAGAATTCGTTCCGTCTTCAAGACCAAAAGATTTA
CCCGTCACTGAACTCGTGGACTCTGAAGCTAGAATCGTTGGTACTGTGCC
TCTCCGATATATCAAACCGGTCGCTTTCGACCCGAAACCTCCACTTTCTT
CATTTGGTACTGGTAGCGGATATGAAGAAGACCCTGAAGCGCTCCGAAGA
AATCTGGTCGACTCGAACTACACATGCGCCACTGTCCGAGAAAGTGCCAT
GTGTTTCTACGAGGCTCACGAGCATATGCTGGTTTCAATTAAGGGAGCTC
GGACCGCTACCGCAGAACTACGTTTTGGAGAGATTGGGGTTGTTTCTAGG
CAACTATCATTGCGGTTACCAATGAGACGTCAAAGTGCAGTCGTAAATAT
GAAGGACTTCAGGCCAAATGTCATCACCGTTGAGGATGATCTGGTTCCAC
GAGGTGCGAGGAATTTAACGGCCGGGATCGATCTGAAGCCGTTCAAAGGT
GTGCTTTTCTACTCGTTTTCTCAGTATAAGGTTTACAATACTGAAGTCCT
GAAGCGGCAGCGAAAGACTCCCTTCCCTATTCCCCTCAAGAGCCGCTGTT
ACCATCAGAAGACAAACAAGAGAAGACTGCGCCTCGCCACCTGGAATTTG
GAGAACAGAGATCCTCTGGATGATGAAAAAGGATTCCGAGTTATTGGACA
AATCATATCCAACCATCTGTGTTGTCCTGATATTCTTGGACTATCTGAAA
TAGGAGACAACGATGGTTCTAATAGAACCAATGTTACATCCGCTTCAATT
ACCTTACAGTTATTGGCAAACGTATCAAATTCAGCTTGTCGTATATCTTC
ATACAAGTTTTCTGACATAGATCCGTTGAACTTGGAAGACGGTGGTCTGC
CAGGCGAGAACATCCGTGTTGCTTTCTTGTATCGAAGCGATAGAGTTGTA
CTTGCGCCAGGAAGACAGGAAGGGGGTCCAAATGATGCAGTGCAAATAGA
GAATGGACGTTTGAGTTTGAATCCTGGTCGTATTGCACCTTCGCAGTTCC
CTAACAGCCGTAAGCCTCTGGCTGCAGAGTTCGAGTTCGTGGATCGTCGC
AGTCGACGTGTCATTGTCGTCATGAACCATTGGAACAGCAAATTTGGAGA
CGATGCTCTATTCGGCCGTATCCAGCCTCCGTTGCAAGCAAGTCAGAAAA
AACGCTTGATCCAAGCCAATGCTGTGAGGGATTTCCTTCACACAGTTCCT
AGAAATAGTACTGTGGTTGTGATGGGAGATTTGAACGACTTTTACTTCTC
TACGCCTGTACGAACTCTAGCTCTCAAGAACCTTTGGAGCACCTTGCCAC
CAAATGAAAGGTATTCGTTTGTGTTCCAAAGTAGACTCCAAACATTGGAC
CACATTCTAGTCGGGGGCCGTTGCCTGCGTTGCGGGCGACTCCGAGTTGC
TCACATTGCCACGGAGTTACCCTTTGGATCTCCCGATCGCGTCTCTGACC
ACGATGGGCTGATGAGCACTTGTAGATGGATTTGCGCGTGA

protein sequence of Ggra3212.t1

>Ggra3212.t1 ID=Ggra3212.t1|Name=Ggra3212.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=647bp
MVRHVFFGLVLIVLFVKGIGHGLRSRCSFRSDCGAGQRCYRREYCHQPLY
IPPPASDFFYISEIQGPGTISPLVGNNVTTIGVVTAINNAARTPSIWLQD
LYEDEDPLTSEAIYLFRPTFVPQVVPEVGDVVEVRGTVEEFVPSSRPKDL
PVTELVDSEARIVGTVPLRYIKPVAFDPKPPLSSFGTGSGYEEDPEALRR
NLVDSNYTCATVRESAMCFYEAHEHMLVSIKGARTATAELRFGEIGVVSR
QLSLRLPMRRQSAVVNMKDFRPNVITVEDDLVPRGARNLTAGIDLKPFKG
VLFYSFSQYKVYNTEVLKRQRKTPFPIPLKSRCYHQKTNKRRLRLATWNL
ENRDPLDDEKGFRVIGQIISNHLCCPDILGLSEIGDNDGSNRTNVTSASI
TLQLLANVSNSACRISSYKFSDIDPLNLEDGGLPGENIRVAFLYRSDRVV
LAPGRQEGGPNDAVQIENGRLSLNPGRIAPSQFPNSRKPLAAEFEFVDRR
SRRVIVVMNHWNSKFGDDALFGRIQPPLQASQKKRLIQANAVRDFLHTVP
RNSTVVVMGDLNDFYFSTPVRTLALKNLWSTLPPNERYSFVFQSRLQTLD
HILVGGRCLRCGRLRVAHIATELPFGSPDRVSDHDGLMSTCRWICA*

mRNA from alignment at tig00000922_pilon:82482..84422-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3212.t1 ID=Ggra3212.t1|Name=Ggra3212.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1941bp|location=Sequence derived from alignment at tig00000922_pilon:82482..84422- (Gracilaria gracilis GNS1m male)
ATGGTGCGACACGTCTTCTTTGGTCTTGTTCTCATTGTGCTTTTTGTGAA
AGGTATTGGTCATGGATTACGCTCACGTTGTAGCTTTCGGAGCGATTGCG
GTGCCGGTCAGCGTTGTTATCGCCGAGAATATTGCCATCAGCCTCTGTAC
ATCCCCCCTCCAGCTAGCGACTTTTTCTACATCAGCGAAATTCAAGGTCC
GGGAACGATATCGCCGTTGGTTGGAAACAATGTCACAACTATAGGTGTCG
TGACTGCAATAAACAATGCGGCGCGTACACCGTCGATTTGGCTTCAAGAC
CTCTACGAAGATGAAGATCCCCTTACATCTGAAGCTATTTACTTGTTTCG
GCCCACCTTCGTCCCCCAAGTAGTTCCCGAAGTTGGCGATGTTGTGGAAG
TACGAGGGACCGTTGAAGAATTCGTTCCGTCTTCAAGACCAAAAGATTTA
CCCGTCACTGAACTCGTGGACTCTGAAGCTAGAATCGTTGGTACTGTGCC
TCTCCGATATATCAAACCGGTCGCTTTCGACCCGAAACCTCCACTTTCTT
CATTTGGTACTGGTAGCGGATATGAAGAAGACCCTGAAGCGCTCCGAAGA
AATCTGGTCGACTCGAACTACACATGCGCCACTGTCCGAGAAAGTGCCAT
GTGTTTCTACGAGGCTCACGAGCATATGCTGGTTTCAATTAAGGGAGCTC
GGACCGCTACCGCAGAACTACGTTTTGGAGAGATTGGGGTTGTTTCTAGG
CAACTATCATTGCGGTTACCAATGAGACGTCAAAGTGCAGTCGTAAATAT
GAAGGACTTCAGGCCAAATGTCATCACCGTTGAGGATGATCTGGTTCCAC
GAGGTGCGAGGAATTTAACGGCCGGGATCGATCTGAAGCCGTTCAAAGGT
GTGCTTTTCTACTCGTTTTCTCAGTATAAGGTTTACAATACTGAAGTCCT
GAAGCGGCAGCGAAAGACTCCCTTCCCTATTCCCCTCAAGAGCCGCTGTT
ACCATCAGAAGACAAACAAGAGAAGACTGCGCCTCGCCACCTGGAATTTG
GAGAACAGAGATCCTCTGGATGATGAAAAAGGATTCCGAGTTATTGGACA
AATCATATCCAACCATCTGTGTTGTCCTGATATTCTTGGACTATCTGAAA
TAGGAGACAACGATGGTTCTAATAGAACCAATGTTACATCCGCTTCAATT
ACCTTACAGTTATTGGCAAACGTATCAAATTCAGCTTGTCGTATATCTTC
ATACAAGTTTTCTGACATAGATCCGTTGAACTTGGAAGACGGTGGTCTGC
CAGGCGAGAACATCCGTGTTGCTTTCTTGTATCGAAGCGATAGAGTTGTA
CTTGCGCCAGGAAGACAGGAAGGGGGTCCAAATGATGCAGTGCAAATAGA
GAATGGACGTTTGAGTTTGAATCCTGGTCGTATTGCACCTTCGCAGTTCC
CTAACAGCCGTAAGCCTCTGGCTGCAGAGTTCGAGTTCGTGGATCGTCGC
AGTCGACGTGTCATTGTCGTCATGAACCATTGGAACAGCAAATTTGGAGA
CGATGCTCTATTCGGCCGTATCCAGCCTCCGTTGCAAGCAAGTCAGAAAA
AACGCTTGATCCAAGCCAATGCTGTGAGGGATTTCCTTCACACAGTTCCT
AGAAATAGTACTGTGGTTGTGATGGGAGATTTGAACGACTTTTACTTCTC
TACGCCTGTACGAACTCTAGCTCTCAAGAACCTTTGGAGCACCTTGCCAC
CAAATGAAAGGTATTCGTTTGTGTTCCAAAGTAGACTCCAAACATTGGAC
CACATTCTAGTCGGGGGCCGTTGCCTGCGTTGCGGGCGACTCCGAGTTGC
TCACATTGCCACGGAGTTACCCTTTGGATCTCCCGATCGCGTCTCTGACC
ACGATGGGCTGATGAGCACTTGTAGATGGATTTGCGCGTGA

Coding sequence (CDS) from alignment at tig00000922_pilon:82482..84422-

>Ggra3212.t1 ID=Ggra3212.t1|Name=Ggra3212.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1941bp|location=Sequence derived from alignment at tig00000922_pilon:82482..84422- (Gracilaria gracilis GNS1m male)
ATGGTGCGACACGTCTTCTTTGGTCTTGTTCTCATTGTGCTTTTTGTGAA
AGGTATTGGTCATGGATTACGCTCACGTTGTAGCTTTCGGAGCGATTGCG
GTGCCGGTCAGCGTTGTTATCGCCGAGAATATTGCCATCAGCCTCTGTAC
ATCCCCCCTCCAGCTAGCGACTTTTTCTACATCAGCGAAATTCAAGGTCC
GGGAACGATATCGCCGTTGGTTGGAAACAATGTCACAACTATAGGTGTCG
TGACTGCAATAAACAATGCGGCGCGTACACCGTCGATTTGGCTTCAAGAC
CTCTACGAAGATGAAGATCCCCTTACATCTGAAGCTATTTACTTGTTTCG
GCCCACCTTCGTCCCCCAAGTAGTTCCCGAAGTTGGCGATGTTGTGGAAG
TACGAGGGACCGTTGAAGAATTCGTTCCGTCTTCAAGACCAAAAGATTTA
CCCGTCACTGAACTCGTGGACTCTGAAGCTAGAATCGTTGGTACTGTGCC
TCTCCGATATATCAAACCGGTCGCTTTCGACCCGAAACCTCCACTTTCTT
CATTTGGTACTGGTAGCGGATATGAAGAAGACCCTGAAGCGCTCCGAAGA
AATCTGGTCGACTCGAACTACACATGCGCCACTGTCCGAGAAAGTGCCAT
GTGTTTCTACGAGGCTCACGAGCATATGCTGGTTTCAATTAAGGGAGCTC
GGACCGCTACCGCAGAACTACGTTTTGGAGAGATTGGGGTTGTTTCTAGG
CAACTATCATTGCGGTTACCAATGAGACGTCAAAGTGCAGTCGTAAATAT
GAAGGACTTCAGGCCAAATGTCATCACCGTTGAGGATGATCTGGTTCCAC
GAGGTGCGAGGAATTTAACGGCCGGGATCGATCTGAAGCCGTTCAAAGGT
GTGCTTTTCTACTCGTTTTCTCAGTATAAGGTTTACAATACTGAAGTCCT
GAAGCGGCAGCGAAAGACTCCCTTCCCTATTCCCCTCAAGAGCCGCTGTT
ACCATCAGAAGACAAACAAGAGAAGACTGCGCCTCGCCACCTGGAATTTG
GAGAACAGAGATCCTCTGGATGATGAAAAAGGATTCCGAGTTATTGGACA
AATCATATCCAACCATCTGTGTTGTCCTGATATTCTTGGACTATCTGAAA
TAGGAGACAACGATGGTTCTAATAGAACCAATGTTACATCCGCTTCAATT
ACCTTACAGTTATTGGCAAACGTATCAAATTCAGCTTGTCGTATATCTTC
ATACAAGTTTTCTGACATAGATCCGTTGAACTTGGAAGACGGTGGTCTGC
CAGGCGAGAACATCCGTGTTGCTTTCTTGTATCGAAGCGATAGAGTTGTA
CTTGCGCCAGGAAGACAGGAAGGGGGTCCAAATGATGCAGTGCAAATAGA
GAATGGACGTTTGAGTTTGAATCCTGGTCGTATTGCACCTTCGCAGTTCC
CTAACAGCCGTAAGCCTCTGGCTGCAGAGTTCGAGTTCGTGGATCGTCGC
AGTCGACGTGTCATTGTCGTCATGAACCATTGGAACAGCAAATTTGGAGA
CGATGCTCTATTCGGCCGTATCCAGCCTCCGTTGCAAGCAAGTCAGAAAA
AACGCTTGATCCAAGCCAATGCTGTGAGGGATTTCCTTCACACAGTTCCT
AGAAATAGTACTGTGGTTGTGATGGGAGATTTGAACGACTTTTACTTCTC
TACGCCTGTACGAACTCTAGCTCTCAAGAACCTTTGGAGCACCTTGCCAC
CAAATGAAAGGTATTCGTTTGTGTTCCAAAGTAGACTCCAAACATTGGAC
CACATTCTAGTCGGGGGCCGTTGCCTGCGTTGCGGGCGACTCCGAGTTGC
TCACATTGCCACGGAGTTACCCTTTGGATCTCCCGATCGCGTCTCTGACC
ACGATGGGCTGATGAGCACTTGTAGATGGATTTGCGCGTGA