Ggra3202.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3202.t1
Unique NameGgra3202.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length664
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000922_piloncontigtig00000922_pilon:56921..58912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709340.1
Preferred nameLACS2
PFAMsAMP-binding,AMP-binding_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
GOsGO:0001676,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005794,GO:0005886,GO:0005911,GO:0006082,GO:0006629,GO:0006631,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009620,GO:0009653,GO:0009791,GO:0009987,GO:0010015,GO:0010025,GO:0010101,GO:0010102,GO:0010143,GO:0010166,GO:0010311,GO:0012505,GO:0015645,GO:0016020,GO:0016021,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0022622,GO:0030054,GO:0030100,GO:0031224,GO:0031957,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0042579,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045807,GO:0048364,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048646,GO:0048731,GO:0048856,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051704,GO:0051707,GO:0055044,GO:0060627,GO:0065007,GO:0071704,GO:0071944,GO:0090696,GO:0090697,GO:0090698,GO:0098542,GO:0099402,GO:1901568,GO:1901570,GO:1901576,GO:1905392,GO:1905393
Evalue1.54e-160
EggNOG OGsCOG1022@1|root,KOG1256@2759|Eukaryota
EC6.2.1.3
Descriptiondecanoate-CoA ligase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3202Ggra3202Gracilaria gracilis GNS1m malegenetig00000922_pilon 56921..58912 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3202.t1.stop1Ggra3202.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000922_pilon 56921..56923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3202.t1.CDS1Ggra3202.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000922_pilon 56921..58912 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3202.t1.exon1Ggra3202.t1.exon1Gracilaria gracilis GNS1m maleexontig00000922_pilon 56921..58912 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3202.t1.start1Ggra3202.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000922_pilon 58910..58912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3202.t1Ggra3202.t1Gracilaria gracilis GNS1m malepolypeptidetig00000922_pilon 56921..58912 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3202.t1 ID=Ggra3202.t1|Name=Ggra3202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=664bp
MLDPDQVSSPVGEGNIRTCGWAKDYDASRPHQDAPPVQSLHQVFFRSAEQ
NAQSPCLGWRDDTESPYIWWTYETAAQHVRTARDALLSMGLTKGDTVGFY
AQNCPQWVMMQYAVMSAGLIVVPIYDTLGPNILEYVSNHSNLKAIVVSPA
NFAKLQEVRLAEKCPSINTVIVAGTRDITEDAEINECVKSAENTISMMEL
MEKGKEAASTGAASAAEVTLSDTSVIMYTSGTTGNPKGVELAHRALVASV
ASANMFFKKWGYPFLSNDVYLSYLPLSHIFEQQAEALFIAAGGCIGFYSG
NIKLILSDLEALKPTVFAGVPRVYARFQQRIEENVEKASFIQRTLFHWAY
SRQVKAEEEPGELQRSGFWDALVFKKVRGKILPRCRFAITGSAPMSGQTN
DFLKVCLMCPITQGYGLTETVGGMNCSIPGNSKSGTVGGPLPGVQVKLRD
LPDMGYLSSDRPYPRGEVCVKGDIVFDGYHKNAEATAKAFDEDGFFRTGD
VGQWLEDGSLQIIDRAKNLFKLSQGEYVSPENLEQEYAKAKLVGQVWVYG
NSLHATLLAVVVPDVAAAKEWGEKHSLQTVESIAAAPKFKKELLAQLAEM
REKSQFKKYETIKDVVIEASGLNELGQGFTVDNDLMTPSFKLKRPQLKAR
YGAQLDALYELHQ*
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spliced messenger RNA

>Ggra3202.t1 ID=Ggra3202.t1|Name=Ggra3202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00000922_pilon:56921..58912- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGATCCTGATCAGGTTTCGTCGCCAGTTGGAGAGGGAAACATTCG
CACCTGCGGCTGGGCGAAGGACTATGATGCCAGTCGTCCACACCAGGACG
CCCCTCCAGTGCAGTCTCTTCACCAAGTGTTCTTCCGATCTGCGGAGCAA
AACGCGCAGTCGCCCTGTCTGGGTTGGCGGGACGACACCGAGTCGCCCTA
CATATGGTGGACGTATGAAACCGCTGCACAACATGTCCGAACGGCGCGCG
ACGCGTTGCTGTCCATGGGTCTCACCAAGGGCGACACCGTCGGCTTCTAC
GCTCAGAATTGTCCGCAATGGGTCATGATGCAGTACGCTGTCATGTCGGC
CGGCCTCATTGTGGTGCCCATCTACGATACGTTGGGTCCCAACATCCTGG
AGTACGTTTCCAACCACTCCAACTTGAAAGCAATTGTGGTGTCACCAGCC
AACTTTGCAAAGCTCCAGGAGGTGAGACTGGCCGAAAAGTGCCCTTCGAT
CAACACTGTCATTGTCGCGGGTACAAGGGACATCACTGAAGACGCCGAAA
TAAATGAATGCGTAAAGTCGGCGGAGAACACCATATCCATGATGGAGCTC
ATGGAGAAGGGAAAAGAAGCGGCGAGCACCGGCGCGGCGTCCGCTGCAGA
GGTCACTCTGAGCGACACCTCGGTGATCATGTACACGTCTGGAACGACTG
GAAACCCGAAGGGTGTCGAGTTGGCACACCGCGCGCTCGTAGCTTCCGTG
GCTTCTGCAAACATGTTCTTCAAGAAATGGGGATATCCTTTCCTCAGCAA
TGACGTGTATCTGAGCTACCTGCCGCTGTCGCACATTTTTGAACAGCAAG
CCGAGGCGCTGTTCATCGCGGCGGGAGGCTGCATCGGGTTCTATTCCGGA
AACATCAAGCTGATTCTGTCCGACTTGGAAGCGCTCAAGCCTACGGTGTT
CGCCGGCGTGCCGCGCGTATACGCTCGTTTCCAGCAGCGAATCGAGGAGA
ACGTGGAGAAGGCTTCGTTCATCCAGAGAACGCTGTTCCATTGGGCGTAC
TCCAGGCAGGTGAAGGCGGAGGAAGAGCCTGGCGAACTGCAGCGCTCCGG
GTTTTGGGACGCGCTGGTGTTCAAGAAGGTGCGCGGAAAGATTCTGCCGC
GATGCCGGTTCGCAATCACCGGGTCGGCGCCCATGTCCGGGCAGACGAAT
GACTTTCTCAAGGTGTGCTTGATGTGCCCCATCACGCAGGGCTACGGGCT
GACTGAGACGGTGGGCGGGATGAATTGCTCCATCCCTGGAAACTCCAAGT
CCGGCACGGTGGGCGGCCCTCTGCCCGGTGTGCAGGTTAAGCTACGTGAC
CTGCCTGATATGGGGTACCTGAGTAGCGACAGGCCGTACCCGCGCGGGGA
AGTTTGCGTGAAGGGGGACATTGTGTTTGATGGATATCATAAGAATGCGG
AGGCTACTGCAAAGGCGTTTGACGAGGATGGGTTCTTCCGCACGGGGGAC
GTTGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCATTGACCGGGCGAA
GAACCTGTTCAAACTGTCGCAGGGCGAGTACGTGTCGCCGGAAAACCTGG
AGCAGGAGTACGCAAAGGCAAAGCTGGTGGGACAGGTGTGGGTGTACGGC
AACTCGCTGCACGCGACGCTGCTGGCGGTGGTTGTGCCGGACGTGGCAGC
GGCCAAGGAGTGGGGCGAGAAACACAGCCTGCAGACAGTGGAGAGCATTG
CGGCGGCGCCCAAGTTCAAGAAGGAGCTGTTGGCGCAGCTGGCGGAGATG
AGAGAGAAAAGCCAGTTCAAGAAGTACGAGACGATCAAGGACGTGGTGAT
CGAGGCCAGCGGTCTGAACGAACTGGGGCAGGGCTTTACTGTGGACAACG
ACTTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAGCTGAAGGCCAGG
TACGGCGCGCAGCTGGACGCGCTGTACGAGCTGCATCAGTAA
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protein sequence of Ggra3202.t1

>Ggra3202.t1 ID=Ggra3202.t1|Name=Ggra3202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=664bp
MLDPDQVSSPVGEGNIRTCGWAKDYDASRPHQDAPPVQSLHQVFFRSAEQ
NAQSPCLGWRDDTESPYIWWTYETAAQHVRTARDALLSMGLTKGDTVGFY
AQNCPQWVMMQYAVMSAGLIVVPIYDTLGPNILEYVSNHSNLKAIVVSPA
NFAKLQEVRLAEKCPSINTVIVAGTRDITEDAEINECVKSAENTISMMEL
MEKGKEAASTGAASAAEVTLSDTSVIMYTSGTTGNPKGVELAHRALVASV
ASANMFFKKWGYPFLSNDVYLSYLPLSHIFEQQAEALFIAAGGCIGFYSG
NIKLILSDLEALKPTVFAGVPRVYARFQQRIEENVEKASFIQRTLFHWAY
SRQVKAEEEPGELQRSGFWDALVFKKVRGKILPRCRFAITGSAPMSGQTN
DFLKVCLMCPITQGYGLTETVGGMNCSIPGNSKSGTVGGPLPGVQVKLRD
LPDMGYLSSDRPYPRGEVCVKGDIVFDGYHKNAEATAKAFDEDGFFRTGD
VGQWLEDGSLQIIDRAKNLFKLSQGEYVSPENLEQEYAKAKLVGQVWVYG
NSLHATLLAVVVPDVAAAKEWGEKHSLQTVESIAAAPKFKKELLAQLAEM
REKSQFKKYETIKDVVIEASGLNELGQGFTVDNDLMTPSFKLKRPQLKAR
YGAQLDALYELHQ*
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mRNA from alignment at tig00000922_pilon:56921..58912-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3202.t1 ID=Ggra3202.t1|Name=Ggra3202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00000922_pilon:56921..58912- (Gracilaria gracilis GNS1m male)
ATGCTCGATCCTGATCAGGTTTCGTCGCCAGTTGGAGAGGGAAACATTCG
CACCTGCGGCTGGGCGAAGGACTATGATGCCAGTCGTCCACACCAGGACG
CCCCTCCAGTGCAGTCTCTTCACCAAGTGTTCTTCCGATCTGCGGAGCAA
AACGCGCAGTCGCCCTGTCTGGGTTGGCGGGACGACACCGAGTCGCCCTA
CATATGGTGGACGTATGAAACCGCTGCACAACATGTCCGAACGGCGCGCG
ACGCGTTGCTGTCCATGGGTCTCACCAAGGGCGACACCGTCGGCTTCTAC
GCTCAGAATTGTCCGCAATGGGTCATGATGCAGTACGCTGTCATGTCGGC
CGGCCTCATTGTGGTGCCCATCTACGATACGTTGGGTCCCAACATCCTGG
AGTACGTTTCCAACCACTCCAACTTGAAAGCAATTGTGGTGTCACCAGCC
AACTTTGCAAAGCTCCAGGAGGTGAGACTGGCCGAAAAGTGCCCTTCGAT
CAACACTGTCATTGTCGCGGGTACAAGGGACATCACTGAAGACGCCGAAA
TAAATGAATGCGTAAAGTCGGCGGAGAACACCATATCCATGATGGAGCTC
ATGGAGAAGGGAAAAGAAGCGGCGAGCACCGGCGCGGCGTCCGCTGCAGA
GGTCACTCTGAGCGACACCTCGGTGATCATGTACACGTCTGGAACGACTG
GAAACCCGAAGGGTGTCGAGTTGGCACACCGCGCGCTCGTAGCTTCCGTG
GCTTCTGCAAACATGTTCTTCAAGAAATGGGGATATCCTTTCCTCAGCAA
TGACGTGTATCTGAGCTACCTGCCGCTGTCGCACATTTTTGAACAGCAAG
CCGAGGCGCTGTTCATCGCGGCGGGAGGCTGCATCGGGTTCTATTCCGGA
AACATCAAGCTGATTCTGTCCGACTTGGAAGCGCTCAAGCCTACGGTGTT
CGCCGGCGTGCCGCGCGTATACGCTCGTTTCCAGCAGCGAATCGAGGAGA
ACGTGGAGAAGGCTTCGTTCATCCAGAGAACGCTGTTCCATTGGGCGTAC
TCCAGGCAGGTGAAGGCGGAGGAAGAGCCTGGCGAACTGCAGCGCTCCGG
GTTTTGGGACGCGCTGGTGTTCAAGAAGGTGCGCGGAAAGATTCTGCCGC
GATGCCGGTTCGCAATCACCGGGTCGGCGCCCATGTCCGGGCAGACGAAT
GACTTTCTCAAGGTGTGCTTGATGTGCCCCATCACGCAGGGCTACGGGCT
GACTGAGACGGTGGGCGGGATGAATTGCTCCATCCCTGGAAACTCCAAGT
CCGGCACGGTGGGCGGCCCTCTGCCCGGTGTGCAGGTTAAGCTACGTGAC
CTGCCTGATATGGGGTACCTGAGTAGCGACAGGCCGTACCCGCGCGGGGA
AGTTTGCGTGAAGGGGGACATTGTGTTTGATGGATATCATAAGAATGCGG
AGGCTACTGCAAAGGCGTTTGACGAGGATGGGTTCTTCCGCACGGGGGAC
GTTGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCATTGACCGGGCGAA
GAACCTGTTCAAACTGTCGCAGGGCGAGTACGTGTCGCCGGAAAACCTGG
AGCAGGAGTACGCAAAGGCAAAGCTGGTGGGACAGGTGTGGGTGTACGGC
AACTCGCTGCACGCGACGCTGCTGGCGGTGGTTGTGCCGGACGTGGCAGC
GGCCAAGGAGTGGGGCGAGAAACACAGCCTGCAGACAGTGGAGAGCATTG
CGGCGGCGCCCAAGTTCAAGAAGGAGCTGTTGGCGCAGCTGGCGGAGATG
AGAGAGAAAAGCCAGTTCAAGAAGTACGAGACGATCAAGGACGTGGTGAT
CGAGGCCAGCGGTCTGAACGAACTGGGGCAGGGCTTTACTGTGGACAACG
ACTTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAGCTGAAGGCCAGG
TACGGCGCGCAGCTGGACGCGCTGTACGAGCTGCATCAGTAA
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Coding sequence (CDS) from alignment at tig00000922_pilon:56921..58912-

>Ggra3202.t1 ID=Ggra3202.t1|Name=Ggra3202.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1992bp|location=Sequence derived from alignment at tig00000922_pilon:56921..58912- (Gracilaria gracilis GNS1m male)
ATGCTCGATCCTGATCAGGTTTCGTCGCCAGTTGGAGAGGGAAACATTCG
CACCTGCGGCTGGGCGAAGGACTATGATGCCAGTCGTCCACACCAGGACG
CCCCTCCAGTGCAGTCTCTTCACCAAGTGTTCTTCCGATCTGCGGAGCAA
AACGCGCAGTCGCCCTGTCTGGGTTGGCGGGACGACACCGAGTCGCCCTA
CATATGGTGGACGTATGAAACCGCTGCACAACATGTCCGAACGGCGCGCG
ACGCGTTGCTGTCCATGGGTCTCACCAAGGGCGACACCGTCGGCTTCTAC
GCTCAGAATTGTCCGCAATGGGTCATGATGCAGTACGCTGTCATGTCGGC
CGGCCTCATTGTGGTGCCCATCTACGATACGTTGGGTCCCAACATCCTGG
AGTACGTTTCCAACCACTCCAACTTGAAAGCAATTGTGGTGTCACCAGCC
AACTTTGCAAAGCTCCAGGAGGTGAGACTGGCCGAAAAGTGCCCTTCGAT
CAACACTGTCATTGTCGCGGGTACAAGGGACATCACTGAAGACGCCGAAA
TAAATGAATGCGTAAAGTCGGCGGAGAACACCATATCCATGATGGAGCTC
ATGGAGAAGGGAAAAGAAGCGGCGAGCACCGGCGCGGCGTCCGCTGCAGA
GGTCACTCTGAGCGACACCTCGGTGATCATGTACACGTCTGGAACGACTG
GAAACCCGAAGGGTGTCGAGTTGGCACACCGCGCGCTCGTAGCTTCCGTG
GCTTCTGCAAACATGTTCTTCAAGAAATGGGGATATCCTTTCCTCAGCAA
TGACGTGTATCTGAGCTACCTGCCGCTGTCGCACATTTTTGAACAGCAAG
CCGAGGCGCTGTTCATCGCGGCGGGAGGCTGCATCGGGTTCTATTCCGGA
AACATCAAGCTGATTCTGTCCGACTTGGAAGCGCTCAAGCCTACGGTGTT
CGCCGGCGTGCCGCGCGTATACGCTCGTTTCCAGCAGCGAATCGAGGAGA
ACGTGGAGAAGGCTTCGTTCATCCAGAGAACGCTGTTCCATTGGGCGTAC
TCCAGGCAGGTGAAGGCGGAGGAAGAGCCTGGCGAACTGCAGCGCTCCGG
GTTTTGGGACGCGCTGGTGTTCAAGAAGGTGCGCGGAAAGATTCTGCCGC
GATGCCGGTTCGCAATCACCGGGTCGGCGCCCATGTCCGGGCAGACGAAT
GACTTTCTCAAGGTGTGCTTGATGTGCCCCATCACGCAGGGCTACGGGCT
GACTGAGACGGTGGGCGGGATGAATTGCTCCATCCCTGGAAACTCCAAGT
CCGGCACGGTGGGCGGCCCTCTGCCCGGTGTGCAGGTTAAGCTACGTGAC
CTGCCTGATATGGGGTACCTGAGTAGCGACAGGCCGTACCCGCGCGGGGA
AGTTTGCGTGAAGGGGGACATTGTGTTTGATGGATATCATAAGAATGCGG
AGGCTACTGCAAAGGCGTTTGACGAGGATGGGTTCTTCCGCACGGGGGAC
GTTGGACAGTGGCTGGAGGACGGGAGCCTGCAGATCATTGACCGGGCGAA
GAACCTGTTCAAACTGTCGCAGGGCGAGTACGTGTCGCCGGAAAACCTGG
AGCAGGAGTACGCAAAGGCAAAGCTGGTGGGACAGGTGTGGGTGTACGGC
AACTCGCTGCACGCGACGCTGCTGGCGGTGGTTGTGCCGGACGTGGCAGC
GGCCAAGGAGTGGGGCGAGAAACACAGCCTGCAGACAGTGGAGAGCATTG
CGGCGGCGCCCAAGTTCAAGAAGGAGCTGTTGGCGCAGCTGGCGGAGATG
AGAGAGAAAAGCCAGTTCAAGAAGTACGAGACGATCAAGGACGTGGTGAT
CGAGGCCAGCGGTCTGAACGAACTGGGGCAGGGCTTTACTGTGGACAACG
ACTTGATGACGCCCAGCTTCAAGCTGAAGCGGCCGCAGCTGAAGGCCAGG
TACGGCGCGCAGCTGGACGCGCTGTACGAGCTGCATCAGTAA
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