Ggra3196.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3196.t2
Unique NameGgra3196.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length41
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000034_piloncontigtig00000034_pilon:2732..3357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3196Ggra3196Gracilaria gracilis GNS1m malegenetig00000034_pilon 2732..3357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3196.t2.CDS1Ggra3196.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000034_pilon 2732..2740 +
Ggra3196.t2.CDS2Ggra3196.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000034_pilon 2799..2821 +
Ggra3196.t2.CDS3Ggra3196.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000034_pilon 2912..2929 +
Ggra3196.t2.CDS4Ggra3196.t2.CDS4Gracilaria gracilis GNS1m maleCDStig00000034_pilon 3160..3194 +
Ggra3196.t2.CDS5Ggra3196.t2.CDS5Gracilaria gracilis GNS1m maleCDStig00000034_pilon 3321..3357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3196.t2.exon1Ggra3196.t2.exon1Gracilaria gracilis GNS1m maleexontig00000034_pilon 2732..2740 +
Ggra3196.t2.exon2Ggra3196.t2.exon2Gracilaria gracilis GNS1m maleexontig00000034_pilon 2799..2821 +
Ggra3196.t2.exon3Ggra3196.t2.exon3Gracilaria gracilis GNS1m maleexontig00000034_pilon 2912..2929 +
Ggra3196.t2.exon4Ggra3196.t2.exon4Gracilaria gracilis GNS1m maleexontig00000034_pilon 3160..3194 +
Ggra3196.t2.exon5Ggra3196.t2.exon5Gracilaria gracilis GNS1m maleexontig00000034_pilon 3321..3357 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3196.t2.intron1Ggra3196.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000034_pilon 2741..2798 +
Ggra3196.t2.intron2Ggra3196.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000034_pilon 2822..2911 +
Ggra3196.t2.intron3Ggra3196.t2.intron3Gracilaria gracilis GNS1m maleintrontig00000034_pilon 2930..3159 +
Ggra3196.t2.intron4Ggra3196.t2.intron4Gracilaria gracilis GNS1m maleintrontig00000034_pilon 3195..3320 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3196.t2.stop1Ggra3196.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000034_pilon 3355..3357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3196.t2Ggra3196.t2Gracilaria gracilis GNS1m malepolypeptidetig00000034_pilon 2732..3357 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3196.t2 ID=Ggra3196.t2|Name=Ggra3196.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=41bp
XVDKSFYPERPLTEPTCMVVELNWVRHMLSMQYSVVGGYE*
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spliced messenger RNA

>Ggra3196.t2 ID=Ggra3196.t2|Name=Ggra3196.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=122bp|location=Sequence derived from alignment at tig00000034_pilon:2732..3357+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ttgtggacaagagtttctatccggaaagaccccttaccgagcccacatgc
atggtagtggaattaaattgggttaggcatatgttgtcaatgcaatattc
cgtggtgggaggctacgagtaa
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protein sequence of Ggra3196.t2

>Ggra3196.t2 ID=Ggra3196.t2|Name=Ggra3196.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=41bp
XVDKSFYPERPLTEPTCMVVELNWVRHMLSMQYSVVGGYE*
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mRNA from alignment at tig00000034_pilon:2732..3357+

Legend: CDSpolypeptideexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3196.t2 ID=Ggra3196.t2|Name=Ggra3196.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp|location=Sequence derived from alignment at tig00000034_pilon:2732..3357+ (Gracilaria gracilis GNS1m male)
ttgtggacagtaagttccaagtatcttgcggtcttctaccgttaaatatg
ttctgacccgtcttcagagagtttctatccggaaagacccgtaagttcat
cggatgacaaggtccccatttcattctgagtctttgttggagacataatg
actgacattacctcgttttgtatgcagcagcttaccgagcccacatgcgt
acctgcaagagcaatacccccaagaaaacgaaacctacttcgacgaaaac
cgtgtcatcttcgcaaaagtaacgaacgaaagtttcgatggcacaaggaa
accattcgtgctttactgacaagtgaatcaattcatcactatgttttgca
tctgcttggctttgttactcctggtatctgaaatagattctcatttaacg
atttcgcgaatgtgatagacttttaaagatggtagtggaattaaattggg
ttaggcatatgttgttaatattgttgacctcttctgcattaaatcgagag
cggcaacacaacaggtttgcaatacgatgcataaatttggtggtagattg
tggagacgttggggtctgattgaatttactgtgtttgaggtcaatgcaat
attccgtggtgggaggctacgagtaa
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Coding sequence (CDS) from alignment at tig00000034_pilon:2732..3357+

>Ggra3196.t2 ID=Ggra3196.t2|Name=Ggra3196.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=122bp|location=Sequence derived from alignment at tig00000034_pilon:2732..3357+ (Gracilaria gracilis GNS1m male)
ttgtggacaagagtttctatccggaaagaccccttaccgagcccacatgc
atggtagtggaattaaattgggttaggcatatgttgtcaatgcaatattc
cgtggtgggaggctacgagtaa
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