Ggra3174.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3174.t1
Unique NameGgra3174.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:392514..394154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog12957.ACEP16755-PA
Preferred namesem-5
PFAMsSH2,SH3_1
Max annot lvl33208|Metazoa
KEGG koko:K04364
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04380,ko04510,ko04540,ko04550,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05161,ko05165,ko05200,ko05203,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04380,map04510,map04540,map04550,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05161,map05165,map05200,map05203,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
GOsGO:0000003,GO:0000165,GO:0000186,GO:0000578,GO:0001654,GO:0001700,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002119,GO:0002164,GO:0002165,GO:0002376,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0004715,GO:0005070,GO:0005102,GO:0005118,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007175,GO:0007176,GO:0007254,GO:0007256,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007350,GO:0007351,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007465,GO:0007472,GO:0007476,GO:0007517,GO:0007548,GO:0007552,GO:0007560,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007614,GO:0007635,GO:0008150,GO:0008152,GO:0008293,GO:0008306,GO:0008355,GO:0008595,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009893,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010469,GO:0010556,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0016020,GO:0016301,GO:0016310,GO:0016477,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019897,GO:0019898,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030182,GO:0030539,GO:0030674,GO:0030707,GO:0030855,GO:0031098,GO:0031234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031344,GO:0031399,GO:0031400,GO:0031401,GO:0031929,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032872,GO:0032874,GO:0033554,GO:0033673,GO:0033674,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035282,GO:0035295,GO:0035556,GO:0035591,GO:0036211,GO:0038083,GO:0038202,GO:0040011,GO:0040028,GO:0042048,GO:0042058,GO:0042059,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042706,GO:0043085,GO:0043086,GO:0043170,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043506,GO:0043507,GO:0043549,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044703,GO:0045087,GO:0045165,GO:0045466,GO:0045500,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045676,GO:0045678,GO:0045859,GO:0045860,GO:0045936,GO:0045937,GO:0046328,GO:0046330,GO:0046530,GO:0046532,GO:0046534,GO:0046552,GO:0046661,GO:0046777,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048580,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048608,GO:0048609,GO:0048663,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048806,GO:0048856,GO:0048869,GO:0048870,GO:0050730,GO:0050732,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051338,GO:0051347,GO:0051348,GO:0051403,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060090,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0061061,GO:0061062,GO:0061097,GO:0061099,GO:0061458,GO:0065007,GO:0065009,GO:0070302,GO:0070304,GO:0070851,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090596,GO:0098552,GO:0098562,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1902531,GO:1902533,GO:1903506,GO:2000026,GO:2000027,GO:2000112,GO:2000272,GO:2001141
Evalue3.19e-08
EggNOG OGsKOG3601@1|root,KOG3601@2759|Eukaryota,38H2P@33154|Opisthokonta,3BAEW@33208|Metazoa,3CZEX@33213|Bilateria,41UYN@6656|Arthropoda,3SHT6@50557|Insecta,46HGI@7399|Hymenoptera
DescriptionSrc homology 2 domains
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3174Ggra3174Gracilaria gracilis GNS1m malegenetig00000120_pilon 392514..394154 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3174.t1.start1Ggra3174.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 392514..392516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3174.t1.CDS1Ggra3174.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 392514..394154 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3174.t1.exon1Ggra3174.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 392514..394154 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3174.t1.stop1Ggra3174.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 394152..394154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3174.t1Ggra3174.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 392514..394154 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3174.t1 ID=Ggra3174.t1|Name=Ggra3174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MWGESSRLSSVKELITPAMNVAMPPEHDSVVFNDKSRKFDEADAAFRALV
DALAAYKTAVLHAAECGVAVATAMDSFFTQPDHKQKQLVAKFLDSQLAIR
AKWLSEAEKTYDAEVLAPIKSRLDEIPKVRDTIRARASYKADMEKRQKKL
QTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTGP
LRALVTVMAEVSKSTVDSMDEVVKLVAETPPITTDMSPAPPLTSATEQVG
GIIGEEVWDGDYVFDDDTEVEAEYEEEKNESEHNDSVPGLARASSHLPPR
GRVHSADGVSKNSVALGVDQLGVDFLSLSSPRRGHSTSSAPADMSRPFSP
ATSLPVFSSTANGSQRDIRDTNMGPSSVSGRISQNGQDTFLPPSSVASST
STENVAHHDVMRLSPRSAPSGRRRRQGEGKESIDTVGSLEGGTRTEVIMR
VVAKYDFSPQETNELELRTGDVVEVTAMTDGGWWMGQVGRSCGYFPRNYT
RELTAEEELAYMNDRRRRTRRGHRRHDSGDSRRSGQTASQSSAHLL*
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spliced messenger RNA

>Ggra3174.t1 ID=Ggra3174.t1|Name=Ggra3174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000120_pilon:392514..394154+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGCGAGTCGTCGCGCCTTTCCAGCGTCAAGGAGCTTATCACCCC
CGCTATGAACGTCGCCATGCCACCCGAGCATGACTCCGTCGTCTTCAACG
ACAAATCGCGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCGCATTGGTC
GATGCGCTTGCCGCGTACAAGACCGCCGTTTTGCACGCCGCTGAATGTGG
CGTCGCCGTCGCTACCGCTATGGACTCCTTTTTCACGCAGCCTGACCACA
AGCAGAAGCAGCTCGTCGCAAAGTTTCTCGACTCGCAGCTTGCTATTCGC
GCAAAGTGGCTCTCGGAGGCGGAGAAGACCTATGACGCGGAGGTTCTAGC
GCCGATTAAGAGCCGCTTGGATGAGATTCCAAAGGTGCGAGACACCATTC
GAGCGCGCGCCAGTTACAAGGCCGATATGGAGAAACGCCAGAAGAAACTT
CAAACCGAGCGCAAGAGAGACACCTCGCGTCTCAGAGACAAGCAGCGCCG
TCTCAAGGAAATCACCAACCAGTATACCATGTTCCACAACCGCGTCATTC
AGAGCTTCAATTACATCGAGCGAAACATGGGCACATTTGTTACCGGCCCA
TTGCGCGCTCTCGTCACTGTCATGGCTGAAGTCTCCAAGTCTACCGTCGA
CTCCATGGACGAGGTTGTTAAACTCGTCGCAGAGACACCGCCCATAACCA
CGGACATGTCACCGGCGCCGCCTCTCACATCTGCCACGGAGCAAGTGGGA
GGAATTATTGGCGAGGAGGTGTGGGACGGTGACTACGTTTTTGATGATGA
TACAGAGGTCGAGGCTGAATATGAAGAAGAAAAGAACGAATCTGAGCACA
ACGACTCTGTGCCCGGCCTTGCCCGCGCTAGTTCTCACCTCCCGCCTCGT
GGCAGAGTGCACAGCGCCGATGGTGTTTCAAAGAACTCTGTCGCGTTAGG
TGTCGATCAGTTAGGCGTGGATTTTTTGTCTCTAAGCAGTCCTCGACGAG
GTCACTCAACCTCATCTGCCCCGGCAGATATGTCGCGGCCCTTCTCCCCA
GCTACATCGCTGCCAGTCTTCTCCTCCACTGCAAACGGTTCTCAGAGGGA
CATAAGGGACACAAACATGGGCCCGAGCTCTGTGTCTGGTCGTATCTCCC
AAAACGGGCAGGATACGTTCTTGCCACCGTCTTCTGTTGCGAGCAGTACA
TCTACTGAAAATGTAGCTCACCACGATGTTATGCGGCTCTCTCCACGAAG
TGCTCCATCTGGTCGACGTCGAAGACAAGGAGAGGGGAAGGAGAGCATCG
ACACCGTTGGATCATTGGAAGGAGGGACGCGTACTGAAGTCATCATGCGA
GTTGTCGCCAAGTATGACTTTTCTCCGCAGGAAACCAACGAGCTTGAATT
GCGGACCGGAGATGTTGTGGAAGTAACTGCCATGACAGACGGGGGCTGGT
GGATGGGTCAGGTTGGGCGCTCATGTGGCTATTTCCCTAGAAACTACACA
AGAGAGCTTACAGCCGAAGAAGAACTTGCATACATGAACGACAGGAGAAG
GCGAACGCGGCGAGGTCATCGAAGACATGATTCTGGAGACTCTCGGCGGT
CAGGGCAAACAGCATCACAGTCGTCTGCCCATCTTCTTTGA
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protein sequence of Ggra3174.t1

>Ggra3174.t1 ID=Ggra3174.t1|Name=Ggra3174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MWGESSRLSSVKELITPAMNVAMPPEHDSVVFNDKSRKFDEADAAFRALV
DALAAYKTAVLHAAECGVAVATAMDSFFTQPDHKQKQLVAKFLDSQLAIR
AKWLSEAEKTYDAEVLAPIKSRLDEIPKVRDTIRARASYKADMEKRQKKL
QTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTGP
LRALVTVMAEVSKSTVDSMDEVVKLVAETPPITTDMSPAPPLTSATEQVG
GIIGEEVWDGDYVFDDDTEVEAEYEEEKNESEHNDSVPGLARASSHLPPR
GRVHSADGVSKNSVALGVDQLGVDFLSLSSPRRGHSTSSAPADMSRPFSP
ATSLPVFSSTANGSQRDIRDTNMGPSSVSGRISQNGQDTFLPPSSVASST
STENVAHHDVMRLSPRSAPSGRRRRQGEGKESIDTVGSLEGGTRTEVIMR
VVAKYDFSPQETNELELRTGDVVEVTAMTDGGWWMGQVGRSCGYFPRNYT
RELTAEEELAYMNDRRRRTRRGHRRHDSGDSRRSGQTASQSSAHLL*
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mRNA from alignment at tig00000120_pilon:392514..394154+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3174.t1 ID=Ggra3174.t1|Name=Ggra3174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000120_pilon:392514..394154+ (Gracilaria gracilis GNS1m male)
ATGTGGGGCGAGTCGTCGCGCCTTTCCAGCGTCAAGGAGCTTATCACCCC
CGCTATGAACGTCGCCATGCCACCCGAGCATGACTCCGTCGTCTTCAACG
ACAAATCGCGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCGCATTGGTC
GATGCGCTTGCCGCGTACAAGACCGCCGTTTTGCACGCCGCTGAATGTGG
CGTCGCCGTCGCTACCGCTATGGACTCCTTTTTCACGCAGCCTGACCACA
AGCAGAAGCAGCTCGTCGCAAAGTTTCTCGACTCGCAGCTTGCTATTCGC
GCAAAGTGGCTCTCGGAGGCGGAGAAGACCTATGACGCGGAGGTTCTAGC
GCCGATTAAGAGCCGCTTGGATGAGATTCCAAAGGTGCGAGACACCATTC
GAGCGCGCGCCAGTTACAAGGCCGATATGGAGAAACGCCAGAAGAAACTT
CAAACCGAGCGCAAGAGAGACACCTCGCGTCTCAGAGACAAGCAGCGCCG
TCTCAAGGAAATCACCAACCAGTATACCATGTTCCACAACCGCGTCATTC
AGAGCTTCAATTACATCGAGCGAAACATGGGCACATTTGTTACCGGCCCA
TTGCGCGCTCTCGTCACTGTCATGGCTGAAGTCTCCAAGTCTACCGTCGA
CTCCATGGACGAGGTTGTTAAACTCGTCGCAGAGACACCGCCCATAACCA
CGGACATGTCACCGGCGCCGCCTCTCACATCTGCCACGGAGCAAGTGGGA
GGAATTATTGGCGAGGAGGTGTGGGACGGTGACTACGTTTTTGATGATGA
TACAGAGGTCGAGGCTGAATATGAAGAAGAAAAGAACGAATCTGAGCACA
ACGACTCTGTGCCCGGCCTTGCCCGCGCTAGTTCTCACCTCCCGCCTCGT
GGCAGAGTGCACAGCGCCGATGGTGTTTCAAAGAACTCTGTCGCGTTAGG
TGTCGATCAGTTAGGCGTGGATTTTTTGTCTCTAAGCAGTCCTCGACGAG
GTCACTCAACCTCATCTGCCCCGGCAGATATGTCGCGGCCCTTCTCCCCA
GCTACATCGCTGCCAGTCTTCTCCTCCACTGCAAACGGTTCTCAGAGGGA
CATAAGGGACACAAACATGGGCCCGAGCTCTGTGTCTGGTCGTATCTCCC
AAAACGGGCAGGATACGTTCTTGCCACCGTCTTCTGTTGCGAGCAGTACA
TCTACTGAAAATGTAGCTCACCACGATGTTATGCGGCTCTCTCCACGAAG
TGCTCCATCTGGTCGACGTCGAAGACAAGGAGAGGGGAAGGAGAGCATCG
ACACCGTTGGATCATTGGAAGGAGGGACGCGTACTGAAGTCATCATGCGA
GTTGTCGCCAAGTATGACTTTTCTCCGCAGGAAACCAACGAGCTTGAATT
GCGGACCGGAGATGTTGTGGAAGTAACTGCCATGACAGACGGGGGCTGGT
GGATGGGTCAGGTTGGGCGCTCATGTGGCTATTTCCCTAGAAACTACACA
AGAGAGCTTACAGCCGAAGAAGAACTTGCATACATGAACGACAGGAGAAG
GCGAACGCGGCGAGGTCATCGAAGACATGATTCTGGAGACTCTCGGCGGT
CAGGGCAAACAGCATCACAGTCGTCTGCCCATCTTCTTTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:392514..394154+

>Ggra3174.t1 ID=Ggra3174.t1|Name=Ggra3174.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000120_pilon:392514..394154+ (Gracilaria gracilis GNS1m male)
ATGTGGGGCGAGTCGTCGCGCCTTTCCAGCGTCAAGGAGCTTATCACCCC
CGCTATGAACGTCGCCATGCCACCCGAGCATGACTCCGTCGTCTTCAACG
ACAAATCGCGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCGCATTGGTC
GATGCGCTTGCCGCGTACAAGACCGCCGTTTTGCACGCCGCTGAATGTGG
CGTCGCCGTCGCTACCGCTATGGACTCCTTTTTCACGCAGCCTGACCACA
AGCAGAAGCAGCTCGTCGCAAAGTTTCTCGACTCGCAGCTTGCTATTCGC
GCAAAGTGGCTCTCGGAGGCGGAGAAGACCTATGACGCGGAGGTTCTAGC
GCCGATTAAGAGCCGCTTGGATGAGATTCCAAAGGTGCGAGACACCATTC
GAGCGCGCGCCAGTTACAAGGCCGATATGGAGAAACGCCAGAAGAAACTT
CAAACCGAGCGCAAGAGAGACACCTCGCGTCTCAGAGACAAGCAGCGCCG
TCTCAAGGAAATCACCAACCAGTATACCATGTTCCACAACCGCGTCATTC
AGAGCTTCAATTACATCGAGCGAAACATGGGCACATTTGTTACCGGCCCA
TTGCGCGCTCTCGTCACTGTCATGGCTGAAGTCTCCAAGTCTACCGTCGA
CTCCATGGACGAGGTTGTTAAACTCGTCGCAGAGACACCGCCCATAACCA
CGGACATGTCACCGGCGCCGCCTCTCACATCTGCCACGGAGCAAGTGGGA
GGAATTATTGGCGAGGAGGTGTGGGACGGTGACTACGTTTTTGATGATGA
TACAGAGGTCGAGGCTGAATATGAAGAAGAAAAGAACGAATCTGAGCACA
ACGACTCTGTGCCCGGCCTTGCCCGCGCTAGTTCTCACCTCCCGCCTCGT
GGCAGAGTGCACAGCGCCGATGGTGTTTCAAAGAACTCTGTCGCGTTAGG
TGTCGATCAGTTAGGCGTGGATTTTTTGTCTCTAAGCAGTCCTCGACGAG
GTCACTCAACCTCATCTGCCCCGGCAGATATGTCGCGGCCCTTCTCCCCA
GCTACATCGCTGCCAGTCTTCTCCTCCACTGCAAACGGTTCTCAGAGGGA
CATAAGGGACACAAACATGGGCCCGAGCTCTGTGTCTGGTCGTATCTCCC
AAAACGGGCAGGATACGTTCTTGCCACCGTCTTCTGTTGCGAGCAGTACA
TCTACTGAAAATGTAGCTCACCACGATGTTATGCGGCTCTCTCCACGAAG
TGCTCCATCTGGTCGACGTCGAAGACAAGGAGAGGGGAAGGAGAGCATCG
ACACCGTTGGATCATTGGAAGGAGGGACGCGTACTGAAGTCATCATGCGA
GTTGTCGCCAAGTATGACTTTTCTCCGCAGGAAACCAACGAGCTTGAATT
GCGGACCGGAGATGTTGTGGAAGTAACTGCCATGACAGACGGGGGCTGGT
GGATGGGTCAGGTTGGGCGCTCATGTGGCTATTTCCCTAGAAACTACACA
AGAGAGCTTACAGCCGAAGAAGAACTTGCATACATGAACGACAGGAGAAG
GCGAACGCGGCGAGGTCATCGAAGACATGATTCTGGAGACTCTCGGCGGT
CAGGGCAAACAGCATCACAGTCGTCTGCCCATCTTCTTTGA
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