Ggra3171.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3171.t1
Unique NameGgra3171.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:388103..389155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI47686
PFAMsHydrolase_6,Hydrolase_like
Max annot lvl4776|Peronosporales
Evalue3.86e-64
EggNOG OGsCOG0647@1|root,KOG1618@2759|Eukaryota,3Q7Z1@4776|Peronosporales
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3171Ggra3171Gracilaria gracilis GNS1m malegenetig00000120_pilon 388103..389155 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3171.t1.stop1Ggra3171.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 388103..388105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3171.t1.CDS1Ggra3171.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 388103..389155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3171.t1.exon1Ggra3171.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 388103..389155 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3171.t1.start1Ggra3171.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 389153..389155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3171.t1Ggra3171.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 388103..389155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3171.t1 ID=Ggra3171.t1|Name=Ggra3171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MLARNLLSTRLLLRRLSTSQPYNGPAFVFDIDGVLIRGGSVLPAAQPALQ
SLYDESQSRWRTPITFLTNGGGTTEAARAEKLTNLFQLPVQEHQIVLSHS
PLRSLMPAYANKAVLTVGNPHCAQIVRSYGFPHVISTEALANIDSHSTPF
ARHGNIQPAAEDYRVSEMPIGAAFVMTDSRDWGRDIQLLIDVLRSDGDRS
RSHSDEQVVDLYFCNPDILFPTEYHLPRLAGGSFCVALQAVYSHVTGREL
RFVQFGKPHSPNYQLAEALLRQQLGHMGYCTQTLPTIYAIGDNPPSDVRG
ANARGEPWRSVLVRTGNFKGVNDEVDAAHVVVDDVQHAVEHALDKHEVLA
*
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spliced messenger RNA

>Ggra3171.t1 ID=Ggra3171.t1|Name=Ggra3171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000120_pilon:388103..389155- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCTAGAAATCTGCTCTCAACTCGCCTTCTTCTGAGGCGGTTGTC
CACCAGTCAACCATACAATGGTCCCGCCTTTGTTTTCGACATAGATGGCG
TCCTCATTCGCGGCGGTTCAGTTCTTCCAGCTGCTCAACCAGCTCTGCAA
TCCTTATACGACGAGTCACAAAGCCGATGGCGCACTCCAATAACCTTTCT
AACAAACGGTGGCGGAACAACTGAAGCTGCGCGCGCTGAAAAGCTCACCA
ACTTGTTCCAGCTCCCAGTTCAAGAGCATCAAATCGTCCTTTCACACTCC
CCACTGAGGAGCCTTATGCCCGCCTATGCAAACAAAGCTGTGTTGACCGT
TGGAAATCCCCACTGTGCGCAAATTGTTCGTTCTTATGGCTTCCCGCATG
TAATCAGCACCGAAGCTCTTGCGAATATCGACTCTCATTCCACACCGTTT
GCACGTCACGGAAACATACAGCCCGCTGCAGAGGACTATCGCGTTTCTGA
AATGCCCATTGGAGCCGCCTTTGTCATGACAGACTCTCGCGACTGGGGAC
GTGATATTCAGCTACTGATCGACGTGTTGCGTTCCGATGGAGATCGCAGT
CGCAGCCATTCCGATGAGCAGGTGGTCGATTTATACTTCTGTAATCCAGA
TATTCTATTTCCCACAGAGTACCATCTCCCAAGGCTGGCTGGCGGATCAT
TCTGCGTGGCATTGCAAGCAGTTTATTCTCATGTGACCGGGAGAGAGTTG
CGTTTCGTTCAATTTGGAAAGCCCCACTCTCCAAACTATCAGTTGGCAGA
AGCACTTCTTCGCCAGCAGCTGGGTCACATGGGGTACTGCACACAAACTT
TACCGACTATTTACGCTATTGGAGACAACCCGCCCTCAGATGTGCGTGGT
GCAAATGCCAGAGGAGAGCCATGGCGATCAGTTTTGGTGCGAACTGGAAA
TTTCAAGGGAGTCAATGATGAAGTTGATGCTGCTCATGTCGTTGTGGATG
ACGTGCAACATGCTGTAGAGCATGCATTGGACAAACATGAGGTGCTAGCA
TGA
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protein sequence of Ggra3171.t1

>Ggra3171.t1 ID=Ggra3171.t1|Name=Ggra3171.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MLARNLLSTRLLLRRLSTSQPYNGPAFVFDIDGVLIRGGSVLPAAQPALQ
SLYDESQSRWRTPITFLTNGGGTTEAARAEKLTNLFQLPVQEHQIVLSHS
PLRSLMPAYANKAVLTVGNPHCAQIVRSYGFPHVISTEALANIDSHSTPF
ARHGNIQPAAEDYRVSEMPIGAAFVMTDSRDWGRDIQLLIDVLRSDGDRS
RSHSDEQVVDLYFCNPDILFPTEYHLPRLAGGSFCVALQAVYSHVTGREL
RFVQFGKPHSPNYQLAEALLRQQLGHMGYCTQTLPTIYAIGDNPPSDVRG
ANARGEPWRSVLVRTGNFKGVNDEVDAAHVVVDDVQHAVEHALDKHEVLA
*
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mRNA from alignment at tig00000120_pilon:388103..389155-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3171.t1 ID=Ggra3171.t1|Name=Ggra3171.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000120_pilon:388103..389155- (Gracilaria gracilis GNS1m male)
ATGCTTGCTAGAAATCTGCTCTCAACTCGCCTTCTTCTGAGGCGGTTGTC
CACCAGTCAACCATACAATGGTCCCGCCTTTGTTTTCGACATAGATGGCG
TCCTCATTCGCGGCGGTTCAGTTCTTCCAGCTGCTCAACCAGCTCTGCAA
TCCTTATACGACGAGTCACAAAGCCGATGGCGCACTCCAATAACCTTTCT
AACAAACGGTGGCGGAACAACTGAAGCTGCGCGCGCTGAAAAGCTCACCA
ACTTGTTCCAGCTCCCAGTTCAAGAGCATCAAATCGTCCTTTCACACTCC
CCACTGAGGAGCCTTATGCCCGCCTATGCAAACAAAGCTGTGTTGACCGT
TGGAAATCCCCACTGTGCGCAAATTGTTCGTTCTTATGGCTTCCCGCATG
TAATCAGCACCGAAGCTCTTGCGAATATCGACTCTCATTCCACACCGTTT
GCACGTCACGGAAACATACAGCCCGCTGCAGAGGACTATCGCGTTTCTGA
AATGCCCATTGGAGCCGCCTTTGTCATGACAGACTCTCGCGACTGGGGAC
GTGATATTCAGCTACTGATCGACGTGTTGCGTTCCGATGGAGATCGCAGT
CGCAGCCATTCCGATGAGCAGGTGGTCGATTTATACTTCTGTAATCCAGA
TATTCTATTTCCCACAGAGTACCATCTCCCAAGGCTGGCTGGCGGATCAT
TCTGCGTGGCATTGCAAGCAGTTTATTCTCATGTGACCGGGAGAGAGTTG
CGTTTCGTTCAATTTGGAAAGCCCCACTCTCCAAACTATCAGTTGGCAGA
AGCACTTCTTCGCCAGCAGCTGGGTCACATGGGGTACTGCACACAAACTT
TACCGACTATTTACGCTATTGGAGACAACCCGCCCTCAGATGTGCGTGGT
GCAAATGCCAGAGGAGAGCCATGGCGATCAGTTTTGGTGCGAACTGGAAA
TTTCAAGGGAGTCAATGATGAAGTTGATGCTGCTCATGTCGTTGTGGATG
ACGTGCAACATGCTGTAGAGCATGCATTGGACAAACATGAGGTGCTAGCA
TGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:388103..389155-

>Ggra3171.t1 ID=Ggra3171.t1|Name=Ggra3171.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000120_pilon:388103..389155- (Gracilaria gracilis GNS1m male)
ATGCTTGCTAGAAATCTGCTCTCAACTCGCCTTCTTCTGAGGCGGTTGTC
CACCAGTCAACCATACAATGGTCCCGCCTTTGTTTTCGACATAGATGGCG
TCCTCATTCGCGGCGGTTCAGTTCTTCCAGCTGCTCAACCAGCTCTGCAA
TCCTTATACGACGAGTCACAAAGCCGATGGCGCACTCCAATAACCTTTCT
AACAAACGGTGGCGGAACAACTGAAGCTGCGCGCGCTGAAAAGCTCACCA
ACTTGTTCCAGCTCCCAGTTCAAGAGCATCAAATCGTCCTTTCACACTCC
CCACTGAGGAGCCTTATGCCCGCCTATGCAAACAAAGCTGTGTTGACCGT
TGGAAATCCCCACTGTGCGCAAATTGTTCGTTCTTATGGCTTCCCGCATG
TAATCAGCACCGAAGCTCTTGCGAATATCGACTCTCATTCCACACCGTTT
GCACGTCACGGAAACATACAGCCCGCTGCAGAGGACTATCGCGTTTCTGA
AATGCCCATTGGAGCCGCCTTTGTCATGACAGACTCTCGCGACTGGGGAC
GTGATATTCAGCTACTGATCGACGTGTTGCGTTCCGATGGAGATCGCAGT
CGCAGCCATTCCGATGAGCAGGTGGTCGATTTATACTTCTGTAATCCAGA
TATTCTATTTCCCACAGAGTACCATCTCCCAAGGCTGGCTGGCGGATCAT
TCTGCGTGGCATTGCAAGCAGTTTATTCTCATGTGACCGGGAGAGAGTTG
CGTTTCGTTCAATTTGGAAAGCCCCACTCTCCAAACTATCAGTTGGCAGA
AGCACTTCTTCGCCAGCAGCTGGGTCACATGGGGTACTGCACACAAACTT
TACCGACTATTTACGCTATTGGAGACAACCCGCCCTCAGATGTGCGTGGT
GCAAATGCCAGAGGAGAGCCATGGCGATCAGTTTTGGTGCGAACTGGAAA
TTTCAAGGGAGTCAATGATGAAGTTGATGCTGCTCATGTCGTTGTGGATG
ACGTGCAACATGCTGTAGAGCATGCATTGGACAAACATGAGGTGCTAGCA
TGA
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