Ggra3169.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3169.t1
Unique NameGgra3169.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:382243..383772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010243074.1
PFAMstRNA-synt_2d
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue4.69e-188
EggNOG OGsCOG0016@1|root,KOG2784@2759|Eukaryota,37R79@33090|Viridiplantae,3GFPA@35493|Streptophyta
EC6.1.1.20
DescriptionPhenylalanine--tRNA ligase alpha subunit
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3169Ggra3169Gracilaria gracilis GNS1m malegenetig00000120_pilon 382243..383772 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3169.t1.stop1Ggra3169.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 382243..382245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3169.t1.CDS1Ggra3169.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 382243..383772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3169.t1.exon1Ggra3169.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 382243..383772 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3169.t1.start1Ggra3169.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 383770..383772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3169.t1Ggra3169.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 382243..383772 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3169.t1 ID=Ggra3169.t1|Name=Ggra3169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MSTDVTNEEALLRSVEELSSTSEFIESLPLANKLQTDHQKLVDGVLKSLH
AKLAIKLEPVTHNRWEISSEGLSYADTTSPEVTFFNAVREVLDIGEAPMP
DQLAKKVSKQVMTRGKQQALRRKWVSIDKETKAFKVNDGVTVTDDVADAL
RKLRDQDGAPDGVPSAMLKDLKSRKLAALKPYKTFKIFPGERLVDARKEQ
ATELTKDMLESGEWKSVAFKPYNFDAEGKQTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTSNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANVM
DMEYLERVRSIHQEGGFGSRGYRYEWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLQKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
TNPICRLTF*
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spliced messenger RNA

>Ggra3169.t1 ID=Ggra3169.t1|Name=Ggra3169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000120_pilon:382243..383772- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCGACGTGACAAACGAGGAAGCTCTGCTTCGATCAGTGGAAGA
GCTCAGCTCAACTTCTGAGTTCATAGAATCACTGCCTTTAGCGAACAAGC
TACAGACTGATCACCAGAAGTTGGTTGATGGCGTTCTCAAGTCATTGCAC
GCCAAACTGGCGATCAAGTTGGAACCAGTGACCCACAATCGCTGGGAAAT
TTCTTCTGAGGGCTTATCTTATGCGGACACTACATCGCCGGAAGTAACCT
TTTTCAATGCGGTCCGGGAAGTTCTTGACATCGGCGAGGCCCCTATGCCT
GATCAACTGGCAAAGAAGGTTTCAAAGCAGGTCATGACCAGAGGCAAACA
GCAGGCTCTGCGTCGCAAGTGGGTGTCTATTGATAAGGAAACGAAGGCGT
TTAAGGTTAACGATGGCGTTACCGTAACAGACGATGTTGCTGACGCCCTC
CGAAAGCTTCGCGATCAGGATGGCGCTCCAGATGGCGTCCCAAGTGCCAT
GCTCAAAGATCTCAAATCTAGGAAGCTTGCGGCCTTGAAACCATACAAGA
CCTTCAAGATCTTCCCCGGAGAAAGGCTGGTAGATGCGCGCAAAGAACAG
GCCACCGAGCTAACGAAAGATATGCTCGAGTCTGGAGAGTGGAAATCTGT
TGCATTTAAGCCTTACAACTTTGACGCAGAAGGAAAACAAACAAGTGGCG
GATACTTACATACTTTGCTCAAAGTTCGTGAACAATTCCGACTCATTTTT
CTAGAGATGGGCTTCGAAGAGATGCCGACCAGCAACTATGTTGAGTCCTC
ATTCTGGAACTTTGACGCCCTTTTCCAACCACAACAGCACCCAGCAAGAG
ATGAACACGACACGTTCTTCCTGTCCGACCCTGAATTTGCCAACGTTATG
GATATGGAGTACCTCGAGAGAGTGCGCAGCATTCACCAAGAAGGTGGATT
TGGGTCTAGAGGCTATCGCTATGAGTGGTCGGAGCAGGAGGCGCGAAAGA
ACATCCTTAGAACTCATACAACAGCTGTCTCGAGTCGAATGTTGTATCTT
CTCGCCCAACAGAAGGAGTTCAAGCCCAAGAAGTACTTTTCAATTGACAG
AGTGTTCCGAAACGAAACTCTTGATGCTACACACTTGGCGGAGTTCCATC
AGATTGAAGGTCTAGTGGCAGATAGAAACCTTTCGTTAGGACACTTGAAA
GGAATCATTCACGAGTTCTTCAAGAAGATGGGTATGTCAAAGTTGCGTTT
CAAACCGACCCATAACCCATACACAACGCCATCTTTAGAGATTCACTCGT
ATCATGAAGGACTTCAGAAGTGGGTTGAGGTCGGAAATTCTGGTGTTTTC
CGGCCAGAGATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCTTGGGGCTTGAGTCTCGAACGACCAACTATGATACGTTATGGGATTC
GCAACATTCGAGACCTCTTCGGTCACAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTGA
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protein sequence of Ggra3169.t1

>Ggra3169.t1 ID=Ggra3169.t1|Name=Ggra3169.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MSTDVTNEEALLRSVEELSSTSEFIESLPLANKLQTDHQKLVDGVLKSLH
AKLAIKLEPVTHNRWEISSEGLSYADTTSPEVTFFNAVREVLDIGEAPMP
DQLAKKVSKQVMTRGKQQALRRKWVSIDKETKAFKVNDGVTVTDDVADAL
RKLRDQDGAPDGVPSAMLKDLKSRKLAALKPYKTFKIFPGERLVDARKEQ
ATELTKDMLESGEWKSVAFKPYNFDAEGKQTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTSNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANVM
DMEYLERVRSIHQEGGFGSRGYRYEWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLQKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
TNPICRLTF*
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mRNA from alignment at tig00000120_pilon:382243..383772-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3169.t1 ID=Ggra3169.t1|Name=Ggra3169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000120_pilon:382243..383772- (Gracilaria gracilis GNS1m male)
ATGTCGACCGACGTGACAAACGAGGAAGCTCTGCTTCGATCAGTGGAAGA
GCTCAGCTCAACTTCTGAGTTCATAGAATCACTGCCTTTAGCGAACAAGC
TACAGACTGATCACCAGAAGTTGGTTGATGGCGTTCTCAAGTCATTGCAC
GCCAAACTGGCGATCAAGTTGGAACCAGTGACCCACAATCGCTGGGAAAT
TTCTTCTGAGGGCTTATCTTATGCGGACACTACATCGCCGGAAGTAACCT
TTTTCAATGCGGTCCGGGAAGTTCTTGACATCGGCGAGGCCCCTATGCCT
GATCAACTGGCAAAGAAGGTTTCAAAGCAGGTCATGACCAGAGGCAAACA
GCAGGCTCTGCGTCGCAAGTGGGTGTCTATTGATAAGGAAACGAAGGCGT
TTAAGGTTAACGATGGCGTTACCGTAACAGACGATGTTGCTGACGCCCTC
CGAAAGCTTCGCGATCAGGATGGCGCTCCAGATGGCGTCCCAAGTGCCAT
GCTCAAAGATCTCAAATCTAGGAAGCTTGCGGCCTTGAAACCATACAAGA
CCTTCAAGATCTTCCCCGGAGAAAGGCTGGTAGATGCGCGCAAAGAACAG
GCCACCGAGCTAACGAAAGATATGCTCGAGTCTGGAGAGTGGAAATCTGT
TGCATTTAAGCCTTACAACTTTGACGCAGAAGGAAAACAAACAAGTGGCG
GATACTTACATACTTTGCTCAAAGTTCGTGAACAATTCCGACTCATTTTT
CTAGAGATGGGCTTCGAAGAGATGCCGACCAGCAACTATGTTGAGTCCTC
ATTCTGGAACTTTGACGCCCTTTTCCAACCACAACAGCACCCAGCAAGAG
ATGAACACGACACGTTCTTCCTGTCCGACCCTGAATTTGCCAACGTTATG
GATATGGAGTACCTCGAGAGAGTGCGCAGCATTCACCAAGAAGGTGGATT
TGGGTCTAGAGGCTATCGCTATGAGTGGTCGGAGCAGGAGGCGCGAAAGA
ACATCCTTAGAACTCATACAACAGCTGTCTCGAGTCGAATGTTGTATCTT
CTCGCCCAACAGAAGGAGTTCAAGCCCAAGAAGTACTTTTCAATTGACAG
AGTGTTCCGAAACGAAACTCTTGATGCTACACACTTGGCGGAGTTCCATC
AGATTGAAGGTCTAGTGGCAGATAGAAACCTTTCGTTAGGACACTTGAAA
GGAATCATTCACGAGTTCTTCAAGAAGATGGGTATGTCAAAGTTGCGTTT
CAAACCGACCCATAACCCATACACAACGCCATCTTTAGAGATTCACTCGT
ATCATGAAGGACTTCAGAAGTGGGTTGAGGTCGGAAATTCTGGTGTTTTC
CGGCCAGAGATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCTTGGGGCTTGAGTCTCGAACGACCAACTATGATACGTTATGGGATTC
GCAACATTCGAGACCTCTTCGGTCACAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:382243..383772-

>Ggra3169.t1 ID=Ggra3169.t1|Name=Ggra3169.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000120_pilon:382243..383772- (Gracilaria gracilis GNS1m male)
ATGTCGACCGACGTGACAAACGAGGAAGCTCTGCTTCGATCAGTGGAAGA
GCTCAGCTCAACTTCTGAGTTCATAGAATCACTGCCTTTAGCGAACAAGC
TACAGACTGATCACCAGAAGTTGGTTGATGGCGTTCTCAAGTCATTGCAC
GCCAAACTGGCGATCAAGTTGGAACCAGTGACCCACAATCGCTGGGAAAT
TTCTTCTGAGGGCTTATCTTATGCGGACACTACATCGCCGGAAGTAACCT
TTTTCAATGCGGTCCGGGAAGTTCTTGACATCGGCGAGGCCCCTATGCCT
GATCAACTGGCAAAGAAGGTTTCAAAGCAGGTCATGACCAGAGGCAAACA
GCAGGCTCTGCGTCGCAAGTGGGTGTCTATTGATAAGGAAACGAAGGCGT
TTAAGGTTAACGATGGCGTTACCGTAACAGACGATGTTGCTGACGCCCTC
CGAAAGCTTCGCGATCAGGATGGCGCTCCAGATGGCGTCCCAAGTGCCAT
GCTCAAAGATCTCAAATCTAGGAAGCTTGCGGCCTTGAAACCATACAAGA
CCTTCAAGATCTTCCCCGGAGAAAGGCTGGTAGATGCGCGCAAAGAACAG
GCCACCGAGCTAACGAAAGATATGCTCGAGTCTGGAGAGTGGAAATCTGT
TGCATTTAAGCCTTACAACTTTGACGCAGAAGGAAAACAAACAAGTGGCG
GATACTTACATACTTTGCTCAAAGTTCGTGAACAATTCCGACTCATTTTT
CTAGAGATGGGCTTCGAAGAGATGCCGACCAGCAACTATGTTGAGTCCTC
ATTCTGGAACTTTGACGCCCTTTTCCAACCACAACAGCACCCAGCAAGAG
ATGAACACGACACGTTCTTCCTGTCCGACCCTGAATTTGCCAACGTTATG
GATATGGAGTACCTCGAGAGAGTGCGCAGCATTCACCAAGAAGGTGGATT
TGGGTCTAGAGGCTATCGCTATGAGTGGTCGGAGCAGGAGGCGCGAAAGA
ACATCCTTAGAACTCATACAACAGCTGTCTCGAGTCGAATGTTGTATCTT
CTCGCCCAACAGAAGGAGTTCAAGCCCAAGAAGTACTTTTCAATTGACAG
AGTGTTCCGAAACGAAACTCTTGATGCTACACACTTGGCGGAGTTCCATC
AGATTGAAGGTCTAGTGGCAGATAGAAACCTTTCGTTAGGACACTTGAAA
GGAATCATTCACGAGTTCTTCAAGAAGATGGGTATGTCAAAGTTGCGTTT
CAAACCGACCCATAACCCATACACAACGCCATCTTTAGAGATTCACTCGT
ATCATGAAGGACTTCAGAAGTGGGTTGAGGTCGGAAATTCTGGTGTTTTC
CGGCCAGAGATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCTTGGGGCTTGAGTCTCGAACGACCAACTATGATACGTTATGGGATTC
GCAACATTCGAGACCTCTTCGGTCACAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTGA
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