Ggra3167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3167.t1
Unique NameGgra3167.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:378220..380653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1347392.CCEZ01000022_gene826
Preferred namersmE
PFAMsMethyltrans_RNA
Max annot lvl186801|Clostridia
KEGG koko:K09761
Evalue1e-22
EggNOG OGsCOG1385@1|root,COG1385@2|Bacteria,1V1CT@1239|Firmicutes,249VK@186801|Clostridia,36DGZ@31979|Clostridiaceae
EC2.1.1.193
DescriptionSpecifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3167Ggra3167Gracilaria gracilis GNS1m malegenetig00000120_pilon 378220..380653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1Ggra3167.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 378220..380653 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1.stop1Ggra3167.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 378220..378222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1.CDS1Ggra3167.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 378220..379154 -
Ggra3167.t1.CDS2Ggra3167.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 379783..379956 -
Ggra3167.t1.CDS3Ggra3167.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 380071..380512 -
Ggra3167.t1.CDS4Ggra3167.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000120_pilon 380627..380653 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1.exon1Ggra3167.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 378220..379154 -
Ggra3167.t1.exon2Ggra3167.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 379783..379956 -
Ggra3167.t1.exon3Ggra3167.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 380071..380512 -
Ggra3167.t1.exon4Ggra3167.t1.exon4Gracilaria gracilis GNS1m maleexontig00000120_pilon 380627..380653 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1.intron1Ggra3167.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 379155..379782 -
Ggra3167.t1.intron2Ggra3167.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 379957..380070 -
Ggra3167.t1.intron3Ggra3167.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000120_pilon 380513..380626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3167.t1.start1Ggra3167.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 380651..380653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3167.t1 ID=Ggra3167.t1|Name=Ggra3167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=526bp
MQATPLKIDSKTSHSITLQSFRNVEYQLLIDQVPVVLCDGCGALQQLRSS
YASSDSTSPPSKEGAAFLFITCTSCSFPTPLGHFRTLLALSHCGPHLSPS
LALAIFVEAAGSQFSLANTHSSLHDWIRDPKCRMWGVHVLLGAIGAREEQ
LCPTRLIKLPFSASNLHQSTPDVQTGMGEAEQATQLLNEAGRIWEECRAH
QLDKHGLFKLNNLALNVLQLPMAAVVYENTAFAKSWASNSVFNVTRRVLF
DTASVSKCNLNQGQVLVRTVTMNSSRDPISYPAGKAKPETRVFVDSFLRC
EEAVQLSREELKHLRARRFRNGDKFVLFNSLGQTATAVYQNEEAIILELE
RPGLRIQRLSSIIAIPKTPSRADWLVEKLTEIGVDSIYFMQTKRTVVADP
SPNKQQRWKRIAVSAAKQSMRDSTPTVSVVGFEAAVGIASQHPLALLLCP
KGNPLLSDSVLADIEREGRVVLLVGPEGGFEAEEINELMNAGANRVSLGR
NRLRIETAAMASAAVVSQLLFRSSV*
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spliced messenger RNA

>Ggra3167.t1 ID=Ggra3167.t1|Name=Ggra3167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at tig00000120_pilon:378220..380653- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCCACCCCCTTGAAGATTGATTCAAAGACGTCTCATTCTATAAC
GCTTCAGTCCTTCCGTAATGTTGAATATCAACTGCTCATCGACCAAGTTC
CTGTAGTTCTTTGTGATGGTTGTGGGGCTCTTCAACAACTTCGCTCATCC
TATGCGTCGTCCGACAGCACATCGCCTCCTTCCAAAGAGGGAGCAGCCTT
CCTCTTTATCACGTGCACTTCTTGTAGTTTCCCGACGCCATTGGGTCATT
TTCGCACCCTGCTCGCATTAAGTCACTGTGGACCTCATCTTTCGCCTTCG
CTGGCGTTGGCCATCTTCGTAGAGGCCGCTGGATCACAGTTTTCTCTGGC
GAATACCCACTCTAGCTTGCACGACTGGATTCGAGATCCCAAGTGTCGCA
TGTGGGGTGTGCATGTTCTTCTCGGTGCCATCGGTGCTAGGGAGGAACAG
TTATGTCCTACCCGACTCATCAAGCTACCATTTTCTGCATCAAATCTGCA
CCAAAGCACTCCTGATGTTCAAACAGGTATGGGGGAAGCAGAGCAAGCGA
CTCAGCTTCTTAACGAAGCGGGAAGGATCTGGGAGGAATGTCGTGCTCAC
CAGCTTGACAAACATGGTCTTTTCAAGTTGAACAACCTTGCCCTCAACGT
TTTGCAGCTTCCAATGGCAGCCGTCGTGTATGAGAATACAGCCTTCGCAA
AGAGTTGGGCATCGAACTCCGTGTTTAACGTGACCAGAAGGGTTCTCTTC
GATACCGCATCTGTATCAAAATGTAACCTGAATCAAGGGCAAGTCTTGGT
TAGAACTGTTACCATGAATTCTTCTCGTGATCCAATATCATACCCTGCTG
GTAAAGCAAAGCCTGAAACACGCGTATTCGTGGATTCGTTTCTCCGATGC
GAAGAGGCTGTGCAGCTTTCGCGCGAGGAACTCAAACATCTCCGTGCTCG
GCGCTTTAGGAACGGTGATAAATTTGTTCTGTTTAACTCTTTAGGGCAGA
CCGCGACTGCTGTTTACCAGAATGAAGAAGCGATCATCTTAGAGCTGGAA
AGGCCAGGGCTTCGGATCCAAAGACTTTCGTCCATAATCGCGATTCCGAA
AACACCATCTAGAGCGGATTGGCTTGTGGAAAAGCTAACTGAAATAGGTG
TGGACTCAATCTATTTTATGCAAACAAAGAGAACAGTCGTGGCTGATCCT
TCACCAAATAAACAGCAGAGATGGAAACGAATTGCAGTTTCAGCCGCAAA
GCAGTCAATGAGAGATTCAACTCCGACAGTTTCAGTTGTGGGTTTTGAAG
CAGCTGTCGGGATAGCCTCTCAACATCCACTTGCTTTATTACTTTGTCCG
AAGGGAAATCCTTTGTTATCCGACTCAGTCTTGGCAGATATAGAGAGAGA
AGGACGTGTGGTACTGCTTGTTGGGCCCGAAGGTGGATTTGAAGCAGAAG
AAATCAACGAGTTGATGAACGCGGGAGCTAACCGGGTGTCTCTCGGCAGG
AACCGGCTTCGAATCGAGACAGCGGCAATGGCCTCTGCCGCAGTTGTATC
TCAACTACTCTTCCGCAGCAGTGTTTGA
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protein sequence of Ggra3167.t1

>Ggra3167.t1 ID=Ggra3167.t1|Name=Ggra3167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=526bp
MQATPLKIDSKTSHSITLQSFRNVEYQLLIDQVPVVLCDGCGALQQLRSS
YASSDSTSPPSKEGAAFLFITCTSCSFPTPLGHFRTLLALSHCGPHLSPS
LALAIFVEAAGSQFSLANTHSSLHDWIRDPKCRMWGVHVLLGAIGAREEQ
LCPTRLIKLPFSASNLHQSTPDVQTGMGEAEQATQLLNEAGRIWEECRAH
QLDKHGLFKLNNLALNVLQLPMAAVVYENTAFAKSWASNSVFNVTRRVLF
DTASVSKCNLNQGQVLVRTVTMNSSRDPISYPAGKAKPETRVFVDSFLRC
EEAVQLSREELKHLRARRFRNGDKFVLFNSLGQTATAVYQNEEAIILELE
RPGLRIQRLSSIIAIPKTPSRADWLVEKLTEIGVDSIYFMQTKRTVVADP
SPNKQQRWKRIAVSAAKQSMRDSTPTVSVVGFEAAVGIASQHPLALLLCP
KGNPLLSDSVLADIEREGRVVLLVGPEGGFEAEEINELMNAGANRVSLGR
NRLRIETAAMASAAVVSQLLFRSSV*
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mRNA from alignment at tig00000120_pilon:378220..380653-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3167.t1 ID=Ggra3167.t1|Name=Ggra3167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2434bp|location=Sequence derived from alignment at tig00000120_pilon:378220..380653- (Gracilaria gracilis GNS1m male)
ATGCAGGCCACCCCCTTGAAGATTGATGTAACTGTCACTACCTTCCTGCG
TTTGCAACGATGGCGCCGTCGTCAACAACTTCTATGGCCAGGTCTTTTCT
CCGATTTACTAACCACCGTCGACCCCGACCCCCATGACCAGTCAAAGACG
TCTCATTCTATAACGCTTCAGTCCTTCCGTAATGTTGAATATCAACTGCT
CATCGACCAAGTTCCTGTAGTTCTTTGTGATGGTTGTGGGGCTCTTCAAC
AACTTCGCTCATCCTATGCGTCGTCCGACAGCACATCGCCTCCTTCCAAA
GAGGGAGCAGCCTTCCTCTTTATCACGTGCACTTCTTGTAGTTTCCCGAC
GCCATTGGGTCATTTTCGCACCCTGCTCGCATTAAGTCACTGTGGACCTC
ATCTTTCGCCTTCGCTGGCGTTGGCCATCTTCGTAGAGGCCGCTGGATCA
CAGTTTTCTCTGGCGAATACCCACTCTAGCTTGCACGACTGGATTCGAGA
TCCCAAGTGTCGCATGTGGGGTGTGCATGTTCTTCTCGGTGCCATCGGTG
CTAGGGAGGAACAGTTATGTCCTACCCGACTCAGTGCGTGTGACAGTAAC
CAAGATTCTTCGAGTTCAGTAATGCGGACAGCGAGATTCCACGACGCGCA
ACGTGCAGAGCTTTACCTGAAGACTAAATTGTCGTCTGGAACATTAGTCA
AGCTACCATTTTCTGCATCAAATCTGCACCAAAGCACTCCTGATGTTCAA
ACAGGTATGGGGGAAGCAGAGCAAGCGACTCAGCTTCTTAACGAAGCGGG
AAGGATCTGGGAGGAATGTCGTGCTCACCAGCTTGACAAACATGGTCTTT
TCAAGTTGAACAACCTTGCCCGTGAGTTTCACGCAACACGGACACGGGCA
AGGATATTTAACCATGCGAGTATTGTTGTATCTACTAGGAATCAACATAC
GCGCGGCCACGCTCCTTCGTGAGATTGAAGTCAACACTCGAAATAAAGAC
TGCGAGCTTTCCTGCGAGAGCCGTTGCAGAACAATATATATACTACCAAA
ATGTCGAAATATCATTCTCTTCAAAGAGATAGTGGTTCTACCATGGAACA
CATGAACCCTATCAAAAAGAGGTAAGATGGTGATGAGCTGACACCGTGAG
CTGATGGCGGAGGGATAGAATGAGTTCGAAGAACATTTTGTAAAAACGAA
AAGGCTTCGTGTCTGGAGCCTCATGTTCAAGGGTTTGTTTTTCTGTCATC
TGAGCATCTGTTGCTACAAAACTTGGTGTAGCGGTCAGACAAAACGTCAG
GAACACGATAGTGTACTCCATTAAGAGAACAGGTTGTTAGCGCCGAACTT
CTGGGCTGTCAAAGTCAATGATTAGTATCGATCAATAAAATCTGGCATTA
GGGATATGTTCAAATTGACTCCAGAGAGCGCTCCCGATACAATGGTTCCT
TTCTGGACAAGGCCACAGGCGTAGAACAGTCACCCTTGTTGCGCCACAGT
CAACGTTTTGCAGCTTCCAATGGCAGCCGTCGTGTATGAGAATACAGCCT
TCGCAAAGAGTTGGGCATCGAACTCCGTGTTTAACGTGACCAGAAGGGTT
CTCTTCGATACCGCATCTGTATCAAAATGTAACCTGAATCAAGGGCAAGT
CTTGGTTAGAACTGTTACCATGAATTCTTCTCGTGATCCAATATCATACC
CTGCTGGTAAAGCAAAGCCTGAAACACGCGTATTCGTGGATTCGTTTCTC
CGATGCGAAGAGGCTGTGCAGCTTTCGCGCGAGGAACTCAAACATCTCCG
TGCTCGGCGCTTTAGGAACGGTGATAAATTTGTTCTGTTTAACTCTTTAG
GGCAGACCGCGACTGCTGTTTACCAGAATGAAGAAGCGATCATCTTAGAG
CTGGAAAGGCCAGGGCTTCGGATCCAAAGACTTTCGTCCATAATCGCGAT
TCCGAAAACACCATCTAGAGCGGATTGGCTTGTGGAAAAGCTAACTGAAA
TAGGTGTGGACTCAATCTATTTTATGCAAACAAAGAGAACAGTCGTGGCT
GATCCTTCACCAAATAAACAGCAGAGATGGAAACGAATTGCAGTTTCAGC
CGCAAAGCAGTCAATGAGAGATTCAACTCCGACAGTTTCAGTTGTGGGTT
TTGAAGCAGCTGTCGGGATAGCCTCTCAACATCCACTTGCTTTATTACTT
TGTCCGAAGGGAAATCCTTTGTTATCCGACTCAGTCTTGGCAGATATAGA
GAGAGAAGGACGTGTGGTACTGCTTGTTGGGCCCGAAGGTGGATTTGAAG
CAGAAGAAATCAACGAGTTGATGAACGCGGGAGCTAACCGGGTGTCTCTC
GGCAGGAACCGGCTTCGAATCGAGACAGCGGCAATGGCCTCTGCCGCAGT
TGTATCTCAACTACTCTTCCGCAGCAGTGTTTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:378220..380653-

>Ggra3167.t1 ID=Ggra3167.t1|Name=Ggra3167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1578bp|location=Sequence derived from alignment at tig00000120_pilon:378220..380653- (Gracilaria gracilis GNS1m male)
ATGCAGGCCACCCCCTTGAAGATTGATTCAAAGACGTCTCATTCTATAAC
GCTTCAGTCCTTCCGTAATGTTGAATATCAACTGCTCATCGACCAAGTTC
CTGTAGTTCTTTGTGATGGTTGTGGGGCTCTTCAACAACTTCGCTCATCC
TATGCGTCGTCCGACAGCACATCGCCTCCTTCCAAAGAGGGAGCAGCCTT
CCTCTTTATCACGTGCACTTCTTGTAGTTTCCCGACGCCATTGGGTCATT
TTCGCACCCTGCTCGCATTAAGTCACTGTGGACCTCATCTTTCGCCTTCG
CTGGCGTTGGCCATCTTCGTAGAGGCCGCTGGATCACAGTTTTCTCTGGC
GAATACCCACTCTAGCTTGCACGACTGGATTCGAGATCCCAAGTGTCGCA
TGTGGGGTGTGCATGTTCTTCTCGGTGCCATCGGTGCTAGGGAGGAACAG
TTATGTCCTACCCGACTCATCAAGCTACCATTTTCTGCATCAAATCTGCA
CCAAAGCACTCCTGATGTTCAAACAGGTATGGGGGAAGCAGAGCAAGCGA
CTCAGCTTCTTAACGAAGCGGGAAGGATCTGGGAGGAATGTCGTGCTCAC
CAGCTTGACAAACATGGTCTTTTCAAGTTGAACAACCTTGCCCTCAACGT
TTTGCAGCTTCCAATGGCAGCCGTCGTGTATGAGAATACAGCCTTCGCAA
AGAGTTGGGCATCGAACTCCGTGTTTAACGTGACCAGAAGGGTTCTCTTC
GATACCGCATCTGTATCAAAATGTAACCTGAATCAAGGGCAAGTCTTGGT
TAGAACTGTTACCATGAATTCTTCTCGTGATCCAATATCATACCCTGCTG
GTAAAGCAAAGCCTGAAACACGCGTATTCGTGGATTCGTTTCTCCGATGC
GAAGAGGCTGTGCAGCTTTCGCGCGAGGAACTCAAACATCTCCGTGCTCG
GCGCTTTAGGAACGGTGATAAATTTGTTCTGTTTAACTCTTTAGGGCAGA
CCGCGACTGCTGTTTACCAGAATGAAGAAGCGATCATCTTAGAGCTGGAA
AGGCCAGGGCTTCGGATCCAAAGACTTTCGTCCATAATCGCGATTCCGAA
AACACCATCTAGAGCGGATTGGCTTGTGGAAAAGCTAACTGAAATAGGTG
TGGACTCAATCTATTTTATGCAAACAAAGAGAACAGTCGTGGCTGATCCT
TCACCAAATAAACAGCAGAGATGGAAACGAATTGCAGTTTCAGCCGCAAA
GCAGTCAATGAGAGATTCAACTCCGACAGTTTCAGTTGTGGGTTTTGAAG
CAGCTGTCGGGATAGCCTCTCAACATCCACTTGCTTTATTACTTTGTCCG
AAGGGAAATCCTTTGTTATCCGACTCAGTCTTGGCAGATATAGAGAGAGA
AGGACGTGTGGTACTGCTTGTTGGGCCCGAAGGTGGATTTGAAGCAGAAG
AAATCAACGAGTTGATGAACGCGGGAGCTAACCGGGTGTCTCTCGGCAGG
AACCGGCTTCGAATCGAGACAGCGGCAATGGCCTCTGCCGCAGTTGTATC
TCAACTACTCTTCCGCAGCAGTGTTTGA
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