Ggra3149.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3149.t1
Unique NameGgra3149.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:307658..308449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog292459.STH1783
Preferred namerluB
PFAMsPseudoU_synth_2,S4
Max annot lvl186801|Clostridia
KEGG koko:K06178,ko:K06183
Evalue1.03e-27
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1TP68@1239|Firmicutes,248UG@186801|Clostridia
EC5.4.99.19,5.4.99.22
DescriptionBelongs to the pseudouridine synthase RsuA family
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3149Ggra3149Gracilaria gracilis GNS1m malegenetig00000120_pilon 307658..308449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1Ggra3149.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 307658..308449 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1.start1Ggra3149.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 307658..307660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1.CDS1Ggra3149.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 307658..308086 +
Ggra3149.t1.CDS2Ggra3149.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 308156..308449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1.exon1Ggra3149.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 307658..308086 +
Ggra3149.t1.exon2Ggra3149.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 308156..308449 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1.intron1Ggra3149.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 308087..308155 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3149.t1.stop1Ggra3149.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 308447..308449 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3149.t1 ID=Ggra3149.t1|Name=Ggra3149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MIEGGYVLVNNKRVTQQGTLVVPGKDRIHVDGKLATLEKPVWVAVHKPRG
MNSHPSEKRRSIDFEIPPEHKKGLIPIAGIEEDASGLLILTNDRTAVAKL
NNPDSNVLKEWVVDCYGPVPKSKINSLQRGVRLEGEAELFRPKNLQCLGN
GFVELSPRERAVLTRFVVRVRKHRRQLMSRMFSAVGLTVVRSSRHAFGSV
LLSPLKRGEFRYLTPNEIKALTRGVKDRTVDRERRQRKFG*
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spliced messenger RNA

>Ggra3149.t1 ID=Ggra3149.t1|Name=Ggra3149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000120_pilon:307658..308449+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAAGGCGGATATGTACTTGTCAATAACAAGAGGGTTACTCAACA
AGGTACACTTGTTGTGCCGGGGAAAGACAGAATTCACGTCGATGGAAAGC
TTGCCACGCTTGAGAAACCCGTATGGGTTGCTGTACACAAACCACGAGGA
ATGAATTCACATCCGTCCGAGAAGAGGCGTTCTATTGACTTTGAGATTCC
TCCCGAACATAAGAAAGGGCTTATTCCCATTGCTGGCATTGAAGAGGATG
CTAGTGGCTTACTCATTCTTACTAATGATCGCACTGCTGTAGCCAAGCTT
AATAATCCAGACAGCAACGTCCTCAAAGAGTGGGTTGTTGACTGTTACGG
CCCAGTTCCCAAGTCCAAGATTAATTCCTTGCAGCGCGGAGTCAGATTAG
AAGGGGAAGCGGAACTCTTCAGACCCAAGAACTTACAATGCCTTGGAAAC
GGATTTGTTGAGTTAAGTCCACGGGAAAGGGCCGTTTTAACGCGCTTCGT
GGTTCGTGTTCGAAAGCATCGTCGTCAACTGATGAGTCGTATGTTTTCGG
CTGTGGGACTGACTGTTGTGCGCTCCAGTCGGCATGCATTTGGATCAGTT
TTGCTGTCTCCTCTGAAGAGAGGAGAGTTTCGTTACTTGACGCCCAATGA
GATAAAAGCGTTAACGAGGGGTGTGAAGGACAGAACAGTGGACAGAGAAC
GTCGTCAGAGAAAGTTCGGATAG
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protein sequence of Ggra3149.t1

>Ggra3149.t1 ID=Ggra3149.t1|Name=Ggra3149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MIEGGYVLVNNKRVTQQGTLVVPGKDRIHVDGKLATLEKPVWVAVHKPRG
MNSHPSEKRRSIDFEIPPEHKKGLIPIAGIEEDASGLLILTNDRTAVAKL
NNPDSNVLKEWVVDCYGPVPKSKINSLQRGVRLEGEAELFRPKNLQCLGN
GFVELSPRERAVLTRFVVRVRKHRRQLMSRMFSAVGLTVVRSSRHAFGSV
LLSPLKRGEFRYLTPNEIKALTRGVKDRTVDRERRQRKFG*
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mRNA from alignment at tig00000120_pilon:307658..308449+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3149.t1 ID=Ggra3149.t1|Name=Ggra3149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000120_pilon:307658..308449+ (Gracilaria gracilis GNS1m male)
ATGATCGAAGGCGGATATGTACTTGTCAATAACAAGAGGGTTACTCAACA
AGGTACACTTGTTGTGCCGGGGAAAGACAGAATTCACGTCGATGGAAAGC
TTGCCACGCTTGAGAAACCCGTATGGGTTGCTGTACACAAACCACGAGGA
ATGAATTCACATCCGTCCGAGAAGAGGCGTTCTATTGACTTTGAGATTCC
TCCCGAACATAAGAAAGGGCTTATTCCCATTGCTGGCATTGAAGAGGATG
CTAGTGGCTTACTCATTCTTACTAATGATCGCACTGCTGTAGCCAAGCTT
AATAATCCAGACAGCAACGTCCTCAAAGAGTGGGTTGTTGACTGTTACGG
CCCAGTTCCCAAGTCCAAGATTAATTCCTTGCAGCGCGGAGTCAGATTAG
AAGGGGAAGCGGAACTCTTCAGACCCAAGGTAAGTCAACCTTTTATCAGT
TTGGAAGCTAACTCTACCATACTAAGAATTACTGACCTCTTCTTACAGAA
CTTACAATGCCTTGGAAACGGATTTGTTGAGTTAAGTCCACGGGAAAGGG
CCGTTTTAACGCGCTTCGTGGTTCGTGTTCGAAAGCATCGTCGTCAACTG
ATGAGTCGTATGTTTTCGGCTGTGGGACTGACTGTTGTGCGCTCCAGTCG
GCATGCATTTGGATCAGTTTTGCTGTCTCCTCTGAAGAGAGGAGAGTTTC
GTTACTTGACGCCCAATGAGATAAAAGCGTTAACGAGGGGTGTGAAGGAC
AGAACAGTGGACAGAGAACGTCGTCAGAGAAAGTTCGGATAG
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Coding sequence (CDS) from alignment at tig00000120_pilon:307658..308449+

>Ggra3149.t1 ID=Ggra3149.t1|Name=Ggra3149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000120_pilon:307658..308449+ (Gracilaria gracilis GNS1m male)
ATGATCGAAGGCGGATATGTACTTGTCAATAACAAGAGGGTTACTCAACA
AGGTACACTTGTTGTGCCGGGGAAAGACAGAATTCACGTCGATGGAAAGC
TTGCCACGCTTGAGAAACCCGTATGGGTTGCTGTACACAAACCACGAGGA
ATGAATTCACATCCGTCCGAGAAGAGGCGTTCTATTGACTTTGAGATTCC
TCCCGAACATAAGAAAGGGCTTATTCCCATTGCTGGCATTGAAGAGGATG
CTAGTGGCTTACTCATTCTTACTAATGATCGCACTGCTGTAGCCAAGCTT
AATAATCCAGACAGCAACGTCCTCAAAGAGTGGGTTGTTGACTGTTACGG
CCCAGTTCCCAAGTCCAAGATTAATTCCTTGCAGCGCGGAGTCAGATTAG
AAGGGGAAGCGGAACTCTTCAGACCCAAGAACTTACAATGCCTTGGAAAC
GGATTTGTTGAGTTAAGTCCACGGGAAAGGGCCGTTTTAACGCGCTTCGT
GGTTCGTGTTCGAAAGCATCGTCGTCAACTGATGAGTCGTATGTTTTCGG
CTGTGGGACTGACTGTTGTGCGCTCCAGTCGGCATGCATTTGGATCAGTT
TTGCTGTCTCCTCTGAAGAGAGGAGAGTTTCGTTACTTGACGCCCAATGA
GATAAAAGCGTTAACGAGGGGTGTGAAGGACAGAACAGTGGACAGAGAAC
GTCGTCAGAGAAAGTTCGGATAG
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