Ggra3145.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3145.t1
Unique NameGgra3145.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:296342..297451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3145Ggra3145Gracilaria gracilis GNS1m malegenetig00000120_pilon 296342..297451 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3145.t1.start1Ggra3145.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 296342..296344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3145.t1.CDS1Ggra3145.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 296342..297451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3145.t1.exon1Ggra3145.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 296342..297451 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3145.t1.stop1Ggra3145.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 297449..297451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3145.t1Ggra3145.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 296342..297451 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3145.t1 ID=Ggra3145.t1|Name=Ggra3145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MSHRTAPVFDMSYNYRLQPPEHKSGQIFDALDHARFDHVRRNVAANPSCL
FATKLVSADIPPQNVIDYALHNCRTWNALLEHCRRTGIALPHAEDLTFPR
RIASMKSIVVWLLSQPQVALPTQNPLHTAVLCELTEAFEILLNRAPQLAH
SVDARGKTPLHVICTLAVYTSSENAVRFVRLLHSAGAHFNARDIDGKTPL
HNLVSALNDSEPAYGLVRRRRSGNSLTAVVPLLDELLACGADIYEEHLNG
SSVMDLALLSGLDYIVIAQRASILRDRMCGSPSAKKWRHRPAHVTGIWSC
LSEDLLCKIFLHLSPKDVATGIGATCSGLRKVAVSEALWRHLETSRCLST
LAGRLRRSLSERSTPSPQL*
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spliced messenger RNA

>Ggra3145.t1 ID=Ggra3145.t1|Name=Ggra3145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000120_pilon:296342..297451+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATCGCACCGCTCCCGTCTTCGACATGTCGTATAACTATCGGCT
GCAGCCGCCGGAGCACAAGAGCGGCCAAATCTTCGATGCCTTAGACCACG
CTCGATTTGACCATGTTCGTCGTAACGTCGCTGCAAATCCCAGCTGCCTG
TTTGCTACCAAGCTTGTCAGCGCCGACATTCCGCCGCAGAACGTCATCGA
CTACGCGCTGCACAACTGTCGCACCTGGAATGCTCTCCTCGAGCACTGCA
GAAGGACAGGCATTGCCCTCCCTCATGCGGAGGACCTCACCTTCCCGCGC
AGAATCGCTTCCATGAAATCCATCGTCGTGTGGTTGTTGTCGCAACCACA
GGTTGCGCTTCCCACTCAAAACCCGCTGCACACTGCCGTGCTCTGTGAAC
TCACTGAGGCGTTTGAGATTCTCTTAAACAGAGCACCTCAGCTTGCTCAC
AGTGTTGATGCAAGGGGAAAGACCCCTTTGCATGTCATCTGTACGCTCGC
TGTGTATACGTCCTCCGAGAACGCAGTTCGTTTTGTACGCTTGCTTCATT
CGGCCGGAGCTCACTTCAACGCCCGTGATATTGATGGTAAAACGCCCTTG
CACAACCTTGTTTCTGCTCTCAATGACTCTGAGCCTGCGTACGGCCTAGT
ACGTCGCAGACGTTCTGGTAACAGTCTCACAGCCGTTGTTCCTCTGCTCG
ATGAGCTGCTTGCCTGTGGTGCCGACATCTACGAGGAGCACTTGAACGGT
AGTAGTGTCATGGACCTTGCGCTCTTATCGGGTCTAGATTATATCGTTAT
TGCGCAACGAGCCAGTATATTACGAGACAGAATGTGTGGCTCTCCGTCTG
CAAAGAAGTGGAGGCACCGACCAGCCCACGTTACTGGCATATGGTCATGC
TTGTCCGAAGACCTCTTGTGCAAAATCTTTCTCCATCTGTCGCCGAAAGA
CGTTGCCACCGGAATCGGAGCCACCTGCTCCGGCCTGAGAAAGGTCGCTG
TGTCCGAGGCTCTATGGCGCCATTTGGAGACCTCTCGATGCCTTTCTACG
CTGGCTGGTCGTTTGCGCCGAAGCCTTTCAGAGAGATCCACACCCTCTCC
GCAACTCTAA
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protein sequence of Ggra3145.t1

>Ggra3145.t1 ID=Ggra3145.t1|Name=Ggra3145.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MSHRTAPVFDMSYNYRLQPPEHKSGQIFDALDHARFDHVRRNVAANPSCL
FATKLVSADIPPQNVIDYALHNCRTWNALLEHCRRTGIALPHAEDLTFPR
RIASMKSIVVWLLSQPQVALPTQNPLHTAVLCELTEAFEILLNRAPQLAH
SVDARGKTPLHVICTLAVYTSSENAVRFVRLLHSAGAHFNARDIDGKTPL
HNLVSALNDSEPAYGLVRRRRSGNSLTAVVPLLDELLACGADIYEEHLNG
SSVMDLALLSGLDYIVIAQRASILRDRMCGSPSAKKWRHRPAHVTGIWSC
LSEDLLCKIFLHLSPKDVATGIGATCSGLRKVAVSEALWRHLETSRCLST
LAGRLRRSLSERSTPSPQL*
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mRNA from alignment at tig00000120_pilon:296342..297451+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3145.t1 ID=Ggra3145.t1|Name=Ggra3145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000120_pilon:296342..297451+ (Gracilaria gracilis GNS1m male)
ATGTCGCATCGCACCGCTCCCGTCTTCGACATGTCGTATAACTATCGGCT
GCAGCCGCCGGAGCACAAGAGCGGCCAAATCTTCGATGCCTTAGACCACG
CTCGATTTGACCATGTTCGTCGTAACGTCGCTGCAAATCCCAGCTGCCTG
TTTGCTACCAAGCTTGTCAGCGCCGACATTCCGCCGCAGAACGTCATCGA
CTACGCGCTGCACAACTGTCGCACCTGGAATGCTCTCCTCGAGCACTGCA
GAAGGACAGGCATTGCCCTCCCTCATGCGGAGGACCTCACCTTCCCGCGC
AGAATCGCTTCCATGAAATCCATCGTCGTGTGGTTGTTGTCGCAACCACA
GGTTGCGCTTCCCACTCAAAACCCGCTGCACACTGCCGTGCTCTGTGAAC
TCACTGAGGCGTTTGAGATTCTCTTAAACAGAGCACCTCAGCTTGCTCAC
AGTGTTGATGCAAGGGGAAAGACCCCTTTGCATGTCATCTGTACGCTCGC
TGTGTATACGTCCTCCGAGAACGCAGTTCGTTTTGTACGCTTGCTTCATT
CGGCCGGAGCTCACTTCAACGCCCGTGATATTGATGGTAAAACGCCCTTG
CACAACCTTGTTTCTGCTCTCAATGACTCTGAGCCTGCGTACGGCCTAGT
ACGTCGCAGACGTTCTGGTAACAGTCTCACAGCCGTTGTTCCTCTGCTCG
ATGAGCTGCTTGCCTGTGGTGCCGACATCTACGAGGAGCACTTGAACGGT
AGTAGTGTCATGGACCTTGCGCTCTTATCGGGTCTAGATTATATCGTTAT
TGCGCAACGAGCCAGTATATTACGAGACAGAATGTGTGGCTCTCCGTCTG
CAAAGAAGTGGAGGCACCGACCAGCCCACGTTACTGGCATATGGTCATGC
TTGTCCGAAGACCTCTTGTGCAAAATCTTTCTCCATCTGTCGCCGAAAGA
CGTTGCCACCGGAATCGGAGCCACCTGCTCCGGCCTGAGAAAGGTCGCTG
TGTCCGAGGCTCTATGGCGCCATTTGGAGACCTCTCGATGCCTTTCTACG
CTGGCTGGTCGTTTGCGCCGAAGCCTTTCAGAGAGATCCACACCCTCTCC
GCAACTCTAA
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Coding sequence (CDS) from alignment at tig00000120_pilon:296342..297451+

>Ggra3145.t1 ID=Ggra3145.t1|Name=Ggra3145.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000120_pilon:296342..297451+ (Gracilaria gracilis GNS1m male)
ATGTCGCATCGCACCGCTCCCGTCTTCGACATGTCGTATAACTATCGGCT
GCAGCCGCCGGAGCACAAGAGCGGCCAAATCTTCGATGCCTTAGACCACG
CTCGATTTGACCATGTTCGTCGTAACGTCGCTGCAAATCCCAGCTGCCTG
TTTGCTACCAAGCTTGTCAGCGCCGACATTCCGCCGCAGAACGTCATCGA
CTACGCGCTGCACAACTGTCGCACCTGGAATGCTCTCCTCGAGCACTGCA
GAAGGACAGGCATTGCCCTCCCTCATGCGGAGGACCTCACCTTCCCGCGC
AGAATCGCTTCCATGAAATCCATCGTCGTGTGGTTGTTGTCGCAACCACA
GGTTGCGCTTCCCACTCAAAACCCGCTGCACACTGCCGTGCTCTGTGAAC
TCACTGAGGCGTTTGAGATTCTCTTAAACAGAGCACCTCAGCTTGCTCAC
AGTGTTGATGCAAGGGGAAAGACCCCTTTGCATGTCATCTGTACGCTCGC
TGTGTATACGTCCTCCGAGAACGCAGTTCGTTTTGTACGCTTGCTTCATT
CGGCCGGAGCTCACTTCAACGCCCGTGATATTGATGGTAAAACGCCCTTG
CACAACCTTGTTTCTGCTCTCAATGACTCTGAGCCTGCGTACGGCCTAGT
ACGTCGCAGACGTTCTGGTAACAGTCTCACAGCCGTTGTTCCTCTGCTCG
ATGAGCTGCTTGCCTGTGGTGCCGACATCTACGAGGAGCACTTGAACGGT
AGTAGTGTCATGGACCTTGCGCTCTTATCGGGTCTAGATTATATCGTTAT
TGCGCAACGAGCCAGTATATTACGAGACAGAATGTGTGGCTCTCCGTCTG
CAAAGAAGTGGAGGCACCGACCAGCCCACGTTACTGGCATATGGTCATGC
TTGTCCGAAGACCTCTTGTGCAAAATCTTTCTCCATCTGTCGCCGAAAGA
CGTTGCCACCGGAATCGGAGCCACCTGCTCCGGCCTGAGAAAGGTCGCTG
TGTCCGAGGCTCTATGGCGCCATTTGGAGACCTCTCGATGCCTTTCTACG
CTGGCTGGTCGTTTGCGCCGAAGCCTTTCAGAGAGATCCACACCCTCTCC
GCAACTCTAA
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