Ggra3139.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3139.t1
Unique NameGgra3139.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:283894..284880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006494988.1
Preferred nameTOC1
PFAMsCCT,Response_reg
Max annot lvl35493|Streptophyta
KEGG koko:K12127
KEGG Pathwayko04712,map04712
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010031,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032501,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048511,GO:0048519,GO:0050789,GO:0050794,GO:0050879,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Evalue0.000663
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37J2W@33090|Viridiplantae,3GDYI@35493|Streptophyta
DescriptionTwo-component response regulator-like
COG categoryK
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3139Ggra3139Gracilaria gracilis GNS1m malegenetig00000120_pilon 283894..284880 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3139.t1.start1Ggra3139.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 283894..283896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3139.t1.CDS1Ggra3139.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 283894..284880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3139.t1.exon1Ggra3139.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 283894..284880 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3139.t1.stop1Ggra3139.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 284878..284880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3139.t1Ggra3139.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 283894..284880 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3139.t1 ID=Ggra3139.t1|Name=Ggra3139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MLSNITYHNMDRLTTRNNRENERRLLEELERISSDKHRTPILTHPVFTPD
SFTFDSSPIMSSLTLDPPPHDALRLDFDQLQSPPSYPDFDAEEQPSVHVD
HTGKLSHFPTSAWLASTISSLPTSATVSSTSSTVDRNPTPLNACVAAAAA
TAAMIVVPDNSNCKRPRSPSPMSLEADQSPDNHTDHSMHSDSELTEDPAS
PRIIQHFGKVESSPIFKTSCHTDDAPPARTKTTAKPSSDQRSNSVKTCSS
DSKKPSLTFSIAPATDAEMSRKRRAEAMERFRRKKAVRCYARRVRYQVRK
RIATTRPRVNGRFARRIDAINHAAKHAK*
back to top

spliced messenger RNA

>Ggra3139.t1 ID=Ggra3139.t1|Name=Ggra3139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000120_pilon:283894..284880+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCAACATCACCTACCACAACATGGACCGTCTCACCACGCGCAA
CAACCGAGAAAATGAGCGTCGTCTCCTCGAGGAGCTCGAACGCATCTCGT
CGGACAAGCATCGCACCCCCATCCTCACCCACCCCGTCTTCACTCCCGAC
TCCTTCACCTTCGACTCCTCTCCAATCATGTCCTCGCTCACATTGGACCC
CCCTCCCCACGACGCGCTGCGTCTCGATTTCGATCAACTACAATCGCCCC
CTTCCTACCCAGACTTCGACGCCGAGGAGCAGCCTTCCGTGCACGTCGAT
CACACCGGTAAGCTCTCGCATTTTCCCACCTCCGCATGGCTGGCCTCTAC
AATTTCCTCATTGCCCACTTCAGCCACCGTGTCCTCCACGTCCTCCACCG
TTGATCGTAACCCGACTCCGCTCAATGCTTGTGTGGCTGCCGCTGCCGCT
ACAGCCGCAATGATCGTTGTGCCTGACAACAGCAATTGCAAGAGGCCGAG
GTCGCCCAGTCCCATGTCCTTAGAAGCCGACCAATCGCCGGACAATCACA
CCGACCATAGCATGCACTCTGATTCGGAGCTCACTGAAGATCCTGCCAGT
CCTAGAATCATTCAGCACTTTGGAAAAGTCGAAAGTTCACCAATCTTCAA
AACCTCTTGTCACACCGATGACGCACCTCCTGCCAGAACAAAAACCACCG
CCAAGCCTTCCAGTGACCAACGCTCAAATTCGGTAAAGACTTGTTCCTCG
GATTCTAAAAAGCCCTCTCTCACCTTCTCAATCGCGCCTGCTACCGATGC
TGAGATGTCCCGAAAGAGAAGGGCCGAAGCTATGGAACGCTTTCGGCGCA
AGAAGGCCGTCAGATGTTACGCACGTCGCGTGCGGTATCAAGTTCGAAAG
CGAATTGCTACTACCAGGCCTAGGGTCAATGGCCGCTTCGCCAGACGAAT
CGATGCCATCAACCATGCCGCAAAGCACGCAAAGTAG
back to top

protein sequence of Ggra3139.t1

>Ggra3139.t1 ID=Ggra3139.t1|Name=Ggra3139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MLSNITYHNMDRLTTRNNRENERRLLEELERISSDKHRTPILTHPVFTPD
SFTFDSSPIMSSLTLDPPPHDALRLDFDQLQSPPSYPDFDAEEQPSVHVD
HTGKLSHFPTSAWLASTISSLPTSATVSSTSSTVDRNPTPLNACVAAAAA
TAAMIVVPDNSNCKRPRSPSPMSLEADQSPDNHTDHSMHSDSELTEDPAS
PRIIQHFGKVESSPIFKTSCHTDDAPPARTKTTAKPSSDQRSNSVKTCSS
DSKKPSLTFSIAPATDAEMSRKRRAEAMERFRRKKAVRCYARRVRYQVRK
RIATTRPRVNGRFARRIDAINHAAKHAK*
back to top

mRNA from alignment at tig00000120_pilon:283894..284880+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3139.t1 ID=Ggra3139.t1|Name=Ggra3139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000120_pilon:283894..284880+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCAACATCACCTACCACAACATGGACCGTCTCACCACGCGCAA
CAACCGAGAAAATGAGCGTCGTCTCCTCGAGGAGCTCGAACGCATCTCGT
CGGACAAGCATCGCACCCCCATCCTCACCCACCCCGTCTTCACTCCCGAC
TCCTTCACCTTCGACTCCTCTCCAATCATGTCCTCGCTCACATTGGACCC
CCCTCCCCACGACGCGCTGCGTCTCGATTTCGATCAACTACAATCGCCCC
CTTCCTACCCAGACTTCGACGCCGAGGAGCAGCCTTCCGTGCACGTCGAT
CACACCGGTAAGCTCTCGCATTTTCCCACCTCCGCATGGCTGGCCTCTAC
AATTTCCTCATTGCCCACTTCAGCCACCGTGTCCTCCACGTCCTCCACCG
TTGATCGTAACCCGACTCCGCTCAATGCTTGTGTGGCTGCCGCTGCCGCT
ACAGCCGCAATGATCGTTGTGCCTGACAACAGCAATTGCAAGAGGCCGAG
GTCGCCCAGTCCCATGTCCTTAGAAGCCGACCAATCGCCGGACAATCACA
CCGACCATAGCATGCACTCTGATTCGGAGCTCACTGAAGATCCTGCCAGT
CCTAGAATCATTCAGCACTTTGGAAAAGTCGAAAGTTCACCAATCTTCAA
AACCTCTTGTCACACCGATGACGCACCTCCTGCCAGAACAAAAACCACCG
CCAAGCCTTCCAGTGACCAACGCTCAAATTCGGTAAAGACTTGTTCCTCG
GATTCTAAAAAGCCCTCTCTCACCTTCTCAATCGCGCCTGCTACCGATGC
TGAGATGTCCCGAAAGAGAAGGGCCGAAGCTATGGAACGCTTTCGGCGCA
AGAAGGCCGTCAGATGTTACGCACGTCGCGTGCGGTATCAAGTTCGAAAG
CGAATTGCTACTACCAGGCCTAGGGTCAATGGCCGCTTCGCCAGACGAAT
CGATGCCATCAACCATGCCGCAAAGCACGCAAAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000120_pilon:283894..284880+

>Ggra3139.t1 ID=Ggra3139.t1|Name=Ggra3139.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000120_pilon:283894..284880+ (Gracilaria gracilis GNS1m male)
ATGCTCTCCAACATCACCTACCACAACATGGACCGTCTCACCACGCGCAA
CAACCGAGAAAATGAGCGTCGTCTCCTCGAGGAGCTCGAACGCATCTCGT
CGGACAAGCATCGCACCCCCATCCTCACCCACCCCGTCTTCACTCCCGAC
TCCTTCACCTTCGACTCCTCTCCAATCATGTCCTCGCTCACATTGGACCC
CCCTCCCCACGACGCGCTGCGTCTCGATTTCGATCAACTACAATCGCCCC
CTTCCTACCCAGACTTCGACGCCGAGGAGCAGCCTTCCGTGCACGTCGAT
CACACCGGTAAGCTCTCGCATTTTCCCACCTCCGCATGGCTGGCCTCTAC
AATTTCCTCATTGCCCACTTCAGCCACCGTGTCCTCCACGTCCTCCACCG
TTGATCGTAACCCGACTCCGCTCAATGCTTGTGTGGCTGCCGCTGCCGCT
ACAGCCGCAATGATCGTTGTGCCTGACAACAGCAATTGCAAGAGGCCGAG
GTCGCCCAGTCCCATGTCCTTAGAAGCCGACCAATCGCCGGACAATCACA
CCGACCATAGCATGCACTCTGATTCGGAGCTCACTGAAGATCCTGCCAGT
CCTAGAATCATTCAGCACTTTGGAAAAGTCGAAAGTTCACCAATCTTCAA
AACCTCTTGTCACACCGATGACGCACCTCCTGCCAGAACAAAAACCACCG
CCAAGCCTTCCAGTGACCAACGCTCAAATTCGGTAAAGACTTGTTCCTCG
GATTCTAAAAAGCCCTCTCTCACCTTCTCAATCGCGCCTGCTACCGATGC
TGAGATGTCCCGAAAGAGAAGGGCCGAAGCTATGGAACGCTTTCGGCGCA
AGAAGGCCGTCAGATGTTACGCACGTCGCGTGCGGTATCAAGTTCGAAAG
CGAATTGCTACTACCAGGCCTAGGGTCAATGGCCGCTTCGCCAGACGAAT
CGATGCCATCAACCATGCCGCAAAGCACGCAAAGTAG
back to top