Ggra3136.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3136.t1
Unique NameGgra3136.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:276040..277629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15722467
PFAMsDEP,DUF547,Glutaredoxin
Max annot lvl33208|Metazoa
Evalue1.73e-36
EggNOG OGs28JT7@1|root,2QS72@2759|Eukaryota,38H0G@33154|Opisthokonta,3BGN4@33208|Metazoa
DescriptionProtein of unknown function, DUF547
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3136Ggra3136Gracilaria gracilis GNS1m malegenetig00000120_pilon 276040..277629 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3136.t1.start1Ggra3136.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 276040..276042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3136.t1.CDS1Ggra3136.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 276040..277629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3136.t1.exon1Ggra3136.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 276040..277629 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3136.t1.stop1Ggra3136.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 277627..277629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3136.t1Ggra3136.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 276040..277629 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3136.t1 ID=Ggra3136.t1|Name=Ggra3136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=530bp
MRASAISTASIRYLRAALAPIAPAPPALVALFDPCSHSFTAPRNRSAPIS
ACALPPLGPAAAAFAPANRILHPRSPLAHSFETPYICTFPPLFRPALHPR
MTPPPNSIPWRNSPPYVPPSPRSMSDVSSVDFQSSKRPSDPSLDPTFTDC
IDAVDAMMQPAPHRIATVRKKWDGYKAFVANGAQIIDWLVEHSFAYTTES
AAQLATKLVRVSGLIPLYKVHTAEQSFHSSARYTYVHRGLTMMSEHGLNV
SVAFPGKPRDICTVLSDLNVAFAQVCHTSVSVDGHFVEYSAVRGSAAWRK
ALVLLAELAVCDDSTIKSAPPSFKQASFYNLYNILIFHSKLVYGHPTDLL
KRSKFFNEAAYIIAGKKLTSIELEHAVCRRTMAASDPRYPWILAEKDPRM
HFILNCGAQSCPPLLPLETENVDLQLQKATVTFIENNCDINFAAKTVTLS
RLWKWFRPDFTPSSKSDDDLIRWIFERAGEAKKSELAKLTAGDYKIKFKV
YNWADNGDVNAKPDVRFMAVYDISFANTV*
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spliced messenger RNA

>Ggra3136.t1 ID=Ggra3136.t1|Name=Ggra3136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000120_pilon:276040..277629+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCAAGTGCTATAAGCACAGCGAGCATCCGTTATCTCCGCGCCGC
GCTAGCGCCCATTGCCCCTGCCCCGCCCGCCCTCGTCGCCCTCTTCGATC
CGTGCTCGCACAGCTTCACCGCGCCACGCAACCGCTCAGCTCCCATCAGT
GCCTGCGCCCTTCCGCCGCTTGGCCCTGCAGCAGCAGCCTTTGCGCCCGC
TAACCGAATTTTGCATCCTCGTTCACCTTTGGCTCATTCGTTTGAGACGC
CTTACATTTGCACCTTTCCGCCCCTATTCCGCCCTGCTTTGCATCCCAGA
ATGACTCCGCCGCCAAACAGCATTCCCTGGCGCAACTCTCCGCCGTACGT
GCCACCAAGCCCGCGCTCCATGTCCGACGTCAGCTCCGTTGATTTCCAGT
CCTCCAAGCGTCCATCCGACCCCTCGTTGGACCCCACTTTCACAGACTGT
ATAGATGCCGTGGACGCCATGATGCAACCTGCGCCGCACCGTATCGCAAC
TGTGCGCAAGAAGTGGGATGGATACAAAGCCTTTGTTGCCAACGGCGCTC
AAATCATCGACTGGCTTGTTGAGCACTCTTTCGCCTACACCACGGAGTCT
GCTGCGCAGTTGGCTACAAAACTGGTCAGAGTCAGCGGCTTGATTCCGCT
GTACAAGGTTCACACCGCGGAACAATCGTTCCATTCGAGCGCCAGATACA
CCTATGTGCACAGGGGGCTCACCATGATGTCAGAGCATGGACTCAATGTT
TCCGTCGCTTTTCCAGGAAAGCCCAGAGATATTTGTACCGTTCTGTCTGA
TCTCAACGTCGCGTTTGCTCAGGTTTGTCACACAAGTGTATCCGTTGATG
GTCATTTTGTTGAGTACTCTGCCGTACGCGGGTCCGCCGCGTGGAGAAAG
GCACTGGTGCTGTTAGCTGAACTTGCGGTTTGTGATGATTCCACCATCAA
GTCGGCGCCTCCTTCCTTTAAACAGGCTTCCTTCTACAACTTGTACAATA
TCCTAATATTTCATTCCAAATTGGTTTATGGACACCCGACAGACCTTCTC
AAGCGAAGCAAGTTCTTCAACGAAGCTGCGTATATCATAGCTGGAAAGAA
GCTAACGTCCATAGAACTGGAGCACGCTGTGTGCAGAAGAACAATGGCTG
CTAGTGATCCGCGATATCCGTGGATACTCGCTGAGAAGGATCCTCGCATG
CACTTCATTCTCAATTGTGGTGCTCAGTCATGCCCGCCGCTTTTGCCGCT
GGAGACAGAAAATGTGGACCTTCAGTTGCAAAAGGCAACTGTGACTTTCA
TTGAAAACAACTGCGATATCAACTTCGCTGCTAAGACGGTTACACTCAGT
AGACTGTGGAAATGGTTCCGGCCAGATTTCACTCCATCCTCTAAAAGTGA
TGACGACCTCATCAGATGGATTTTTGAACGTGCAGGCGAGGCGAAGAAGA
GCGAATTGGCAAAGTTGACGGCTGGCGACTACAAGATCAAGTTCAAGGTC
TACAACTGGGCCGATAATGGAGATGTCAACGCCAAACCTGACGTGCGCTT
CATGGCTGTATACGACATCAGTTTTGCGAACACCGTTTAG
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protein sequence of Ggra3136.t1

>Ggra3136.t1 ID=Ggra3136.t1|Name=Ggra3136.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=530bp
MRASAISTASIRYLRAALAPIAPAPPALVALFDPCSHSFTAPRNRSAPIS
ACALPPLGPAAAAFAPANRILHPRSPLAHSFETPYICTFPPLFRPALHPR
MTPPPNSIPWRNSPPYVPPSPRSMSDVSSVDFQSSKRPSDPSLDPTFTDC
IDAVDAMMQPAPHRIATVRKKWDGYKAFVANGAQIIDWLVEHSFAYTTES
AAQLATKLVRVSGLIPLYKVHTAEQSFHSSARYTYVHRGLTMMSEHGLNV
SVAFPGKPRDICTVLSDLNVAFAQVCHTSVSVDGHFVEYSAVRGSAAWRK
ALVLLAELAVCDDSTIKSAPPSFKQASFYNLYNILIFHSKLVYGHPTDLL
KRSKFFNEAAYIIAGKKLTSIELEHAVCRRTMAASDPRYPWILAEKDPRM
HFILNCGAQSCPPLLPLETENVDLQLQKATVTFIENNCDINFAAKTVTLS
RLWKWFRPDFTPSSKSDDDLIRWIFERAGEAKKSELAKLTAGDYKIKFKV
YNWADNGDVNAKPDVRFMAVYDISFANTV*
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mRNA from alignment at tig00000120_pilon:276040..277629+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3136.t1 ID=Ggra3136.t1|Name=Ggra3136.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00000120_pilon:276040..277629+ (Gracilaria gracilis GNS1m male)
ATGCGTGCAAGTGCTATAAGCACAGCGAGCATCCGTTATCTCCGCGCCGC
GCTAGCGCCCATTGCCCCTGCCCCGCCCGCCCTCGTCGCCCTCTTCGATC
CGTGCTCGCACAGCTTCACCGCGCCACGCAACCGCTCAGCTCCCATCAGT
GCCTGCGCCCTTCCGCCGCTTGGCCCTGCAGCAGCAGCCTTTGCGCCCGC
TAACCGAATTTTGCATCCTCGTTCACCTTTGGCTCATTCGTTTGAGACGC
CTTACATTTGCACCTTTCCGCCCCTATTCCGCCCTGCTTTGCATCCCAGA
ATGACTCCGCCGCCAAACAGCATTCCCTGGCGCAACTCTCCGCCGTACGT
GCCACCAAGCCCGCGCTCCATGTCCGACGTCAGCTCCGTTGATTTCCAGT
CCTCCAAGCGTCCATCCGACCCCTCGTTGGACCCCACTTTCACAGACTGT
ATAGATGCCGTGGACGCCATGATGCAACCTGCGCCGCACCGTATCGCAAC
TGTGCGCAAGAAGTGGGATGGATACAAAGCCTTTGTTGCCAACGGCGCTC
AAATCATCGACTGGCTTGTTGAGCACTCTTTCGCCTACACCACGGAGTCT
GCTGCGCAGTTGGCTACAAAACTGGTCAGAGTCAGCGGCTTGATTCCGCT
GTACAAGGTTCACACCGCGGAACAATCGTTCCATTCGAGCGCCAGATACA
CCTATGTGCACAGGGGGCTCACCATGATGTCAGAGCATGGACTCAATGTT
TCCGTCGCTTTTCCAGGAAAGCCCAGAGATATTTGTACCGTTCTGTCTGA
TCTCAACGTCGCGTTTGCTCAGGTTTGTCACACAAGTGTATCCGTTGATG
GTCATTTTGTTGAGTACTCTGCCGTACGCGGGTCCGCCGCGTGGAGAAAG
GCACTGGTGCTGTTAGCTGAACTTGCGGTTTGTGATGATTCCACCATCAA
GTCGGCGCCTCCTTCCTTTAAACAGGCTTCCTTCTACAACTTGTACAATA
TCCTAATATTTCATTCCAAATTGGTTTATGGACACCCGACAGACCTTCTC
AAGCGAAGCAAGTTCTTCAACGAAGCTGCGTATATCATAGCTGGAAAGAA
GCTAACGTCCATAGAACTGGAGCACGCTGTGTGCAGAAGAACAATGGCTG
CTAGTGATCCGCGATATCCGTGGATACTCGCTGAGAAGGATCCTCGCATG
CACTTCATTCTCAATTGTGGTGCTCAGTCATGCCCGCCGCTTTTGCCGCT
GGAGACAGAAAATGTGGACCTTCAGTTGCAAAAGGCAACTGTGACTTTCA
TTGAAAACAACTGCGATATCAACTTCGCTGCTAAGACGGTTACACTCAGT
AGACTGTGGAAATGGTTCCGGCCAGATTTCACTCCATCCTCTAAAAGTGA
TGACGACCTCATCAGATGGATTTTTGAACGTGCAGGCGAGGCGAAGAAGA
GCGAATTGGCAAAGTTGACGGCTGGCGACTACAAGATCAAGTTCAAGGTC
TACAACTGGGCCGATAATGGAGATGTCAACGCCAAACCTGACGTGCGCTT
CATGGCTGTATACGACATCAGTTTTGCGAACACCGTTTAG
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Coding sequence (CDS) from alignment at tig00000120_pilon:276040..277629+

>Ggra3136.t1 ID=Ggra3136.t1|Name=Ggra3136.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00000120_pilon:276040..277629+ (Gracilaria gracilis GNS1m male)
ATGCGTGCAAGTGCTATAAGCACAGCGAGCATCCGTTATCTCCGCGCCGC
GCTAGCGCCCATTGCCCCTGCCCCGCCCGCCCTCGTCGCCCTCTTCGATC
CGTGCTCGCACAGCTTCACCGCGCCACGCAACCGCTCAGCTCCCATCAGT
GCCTGCGCCCTTCCGCCGCTTGGCCCTGCAGCAGCAGCCTTTGCGCCCGC
TAACCGAATTTTGCATCCTCGTTCACCTTTGGCTCATTCGTTTGAGACGC
CTTACATTTGCACCTTTCCGCCCCTATTCCGCCCTGCTTTGCATCCCAGA
ATGACTCCGCCGCCAAACAGCATTCCCTGGCGCAACTCTCCGCCGTACGT
GCCACCAAGCCCGCGCTCCATGTCCGACGTCAGCTCCGTTGATTTCCAGT
CCTCCAAGCGTCCATCCGACCCCTCGTTGGACCCCACTTTCACAGACTGT
ATAGATGCCGTGGACGCCATGATGCAACCTGCGCCGCACCGTATCGCAAC
TGTGCGCAAGAAGTGGGATGGATACAAAGCCTTTGTTGCCAACGGCGCTC
AAATCATCGACTGGCTTGTTGAGCACTCTTTCGCCTACACCACGGAGTCT
GCTGCGCAGTTGGCTACAAAACTGGTCAGAGTCAGCGGCTTGATTCCGCT
GTACAAGGTTCACACCGCGGAACAATCGTTCCATTCGAGCGCCAGATACA
CCTATGTGCACAGGGGGCTCACCATGATGTCAGAGCATGGACTCAATGTT
TCCGTCGCTTTTCCAGGAAAGCCCAGAGATATTTGTACCGTTCTGTCTGA
TCTCAACGTCGCGTTTGCTCAGGTTTGTCACACAAGTGTATCCGTTGATG
GTCATTTTGTTGAGTACTCTGCCGTACGCGGGTCCGCCGCGTGGAGAAAG
GCACTGGTGCTGTTAGCTGAACTTGCGGTTTGTGATGATTCCACCATCAA
GTCGGCGCCTCCTTCCTTTAAACAGGCTTCCTTCTACAACTTGTACAATA
TCCTAATATTTCATTCCAAATTGGTTTATGGACACCCGACAGACCTTCTC
AAGCGAAGCAAGTTCTTCAACGAAGCTGCGTATATCATAGCTGGAAAGAA
GCTAACGTCCATAGAACTGGAGCACGCTGTGTGCAGAAGAACAATGGCTG
CTAGTGATCCGCGATATCCGTGGATACTCGCTGAGAAGGATCCTCGCATG
CACTTCATTCTCAATTGTGGTGCTCAGTCATGCCCGCCGCTTTTGCCGCT
GGAGACAGAAAATGTGGACCTTCAGTTGCAAAAGGCAACTGTGACTTTCA
TTGAAAACAACTGCGATATCAACTTCGCTGCTAAGACGGTTACACTCAGT
AGACTGTGGAAATGGTTCCGGCCAGATTTCACTCCATCCTCTAAAAGTGA
TGACGACCTCATCAGATGGATTTTTGAACGTGCAGGCGAGGCGAAGAAGA
GCGAATTGGCAAAGTTGACGGCTGGCGACTACAAGATCAAGTTCAAGGTC
TACAACTGGGCCGATAATGGAGATGTCAACGCCAAACCTGACGTGCGCTT
CATGGCTGTATACGACATCAGTTTTGCGAACACCGTTTAG
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