Ggra3134.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3134.t1
Unique Name	Ggra3134.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	477

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:268336..269766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709049.1
PFAMs	HMG-CoA_red,HMG_CoA_synt_C,HMG_CoA_synt_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00503
KEGG ko	ko:K01641
KEGG Reaction	R01978
KEGG Pathway	ko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG Module	M00088,M00095
Evalue	1.79e-166
EggNOG OGs	COG3425@1\|root,KOG1393@2759\|Eukaryota
EC	2.3.3.10
Description	hydroxymethylglutaryl-CoA synthase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3134	Ggra3134	Gracilaria gracilis GNS1m male	gene	tig00000120_pilon 268336..269766 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3134.t1.start1	Ggra3134.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000120_pilon 268336..268338 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3134.t1.CDS1	Ggra3134.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000120_pilon 268336..269766 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3134.t1.exon1	Ggra3134.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000120_pilon 268336..269766 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3134.t1.stop1	Ggra3134.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000120_pilon 269764..269766 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3134.t1	Ggra3134.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000120_pilon 268336..269766 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:268336..269766+
coding sequence from alignment at tig00000120_pilon:268336..269766+

mRNA sequence

>Ggra3134.t1 ID=Ggra3134.t1|Name=Ggra3134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp
MTLSSVTSPSSTPDALQTASSSSGYPVRLTDVGILHMAVYIPRTAVAQAD
LERYDRASSGKYTVGLGQLYMSFVSDREDVISLALTAVSQLVRDAGISYS
DIGRLEVGTETVLDKSKSIKTSLMRLFEDCGNSEVEGLDNTNACYGGTAA
LLNTVAWCESSAWDGRYAVVVATDISVYEPGPARPTGGAGAVAMLITRSA
SVPIRFEIGLRATCMGDTYDFFKPRVAIEYPTVRGQQTVDTFVGAMDECY
RRYAIRAKPADKRRFSIRRDVDYCVFHAPFNKMVQKSFARLVYNDFLNVL
EGEDSFFEPVEKYRNLPRESSHRNREAQRAFVKLSKDYYGKKCAPAAWLA
KEIGNCYTASLYSSLAALIVEKGNDLIGKRILLYSFGSGFASSMFSLRIT
APVDKVFLGRDLKERLDDRIIANAENYVRTLKERERDYGRFGYVPQASIE
DLFPGTWYLRGVQAEGERSYDQVPFR*

spliced messenger RNA

>Ggra3134.t1 ID=Ggra3134.t1|Name=Ggra3134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000120_pilon:268336..269766+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTGAGCTCAGTGACCTCCCCGAGTTCAACGCCAGATGCCCTCCA
AACAGCATCTTCCTCCTCAGGGTATCCCGTGCGCCTAACCGATGTCGGCA
TTCTACACATGGCCGTCTACATCCCGCGCACGGCTGTTGCTCAAGCAGAC
CTTGAGCGTTATGATAGGGCGTCCTCCGGGAAATACACCGTCGGTTTAGG
CCAGCTATACATGTCGTTCGTCTCGGATCGCGAAGACGTCATATCGTTGG
CGCTCACAGCCGTGTCCCAGCTGGTCCGCGACGCCGGTATCTCCTACTCT
GACATAGGCCGCCTTGAAGTCGGTACCGAGACTGTTCTAGACAAATCCAA
GTCCATAAAAACTAGTCTCATGCGCCTGTTCGAGGACTGTGGCAATAGCG
AAGTAGAAGGTCTTGATAACACCAACGCATGTTACGGTGGAACCGCTGCC
CTACTCAACACGGTAGCGTGGTGCGAGTCTTCCGCGTGGGATGGTCGCTA
CGCTGTCGTAGTTGCCACCGATATATCTGTGTACGAGCCAGGGCCGGCTC
GGCCGACCGGCGGCGCAGGAGCTGTGGCCATGTTAATTACACGCAGTGCT
TCCGTTCCTATCCGCTTTGAGATTGGCTTGCGCGCTACTTGTATGGGCGA
TACGTATGACTTCTTCAAGCCACGAGTAGCGATCGAGTATCCAACTGTTC
GCGGTCAGCAAACGGTCGATACGTTTGTTGGCGCCATGGATGAATGCTAT
CGACGATATGCTATCCGCGCAAAACCCGCAGACAAGCGTCGATTTAGCAT
CAGACGCGATGTTGATTATTGTGTGTTTCATGCCCCGTTCAACAAAATGG
TTCAGAAGTCTTTCGCTAGACTAGTTTACAATGACTTTTTAAATGTTTTG
GAGGGGGAAGATTCCTTTTTCGAACCTGTTGAGAAGTACAGAAACCTCCC
GAGGGAGTCAAGCCATCGAAATCGAGAAGCTCAGCGAGCGTTCGTCAAGC
TTTCTAAAGATTATTATGGGAAAAAGTGCGCGCCCGCCGCTTGGCTGGCA
AAGGAAATCGGAAACTGTTATACCGCCTCATTGTACTCGTCACTAGCAGC
TCTGATTGTTGAGAAAGGTAACGATCTTATTGGGAAACGTATACTCTTAT
ACTCTTTTGGATCTGGCTTTGCGTCATCTATGTTTTCGCTTCGTATAACA
GCACCCGTGGACAAAGTGTTTCTAGGAAGAGATTTGAAGGAGCGGCTTGA
TGACAGGATTATTGCAAATGCTGAAAACTATGTTCGTACTCTTAAAGAGA
GGGAGCGTGACTATGGAAGGTTTGGATACGTTCCCCAAGCAAGCATTGAG
GACCTATTTCCAGGTACATGGTATCTACGGGGGGTTCAAGCAGAAGGAGA
AAGAAGCTATGATCAAGTTCCCTTTCGATGA

protein sequence of Ggra3134.t1

>Ggra3134.t1 ID=Ggra3134.t1|Name=Ggra3134.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=477bp
MTLSSVTSPSSTPDALQTASSSSGYPVRLTDVGILHMAVYIPRTAVAQAD
LERYDRASSGKYTVGLGQLYMSFVSDREDVISLALTAVSQLVRDAGISYS
DIGRLEVGTETVLDKSKSIKTSLMRLFEDCGNSEVEGLDNTNACYGGTAA
LLNTVAWCESSAWDGRYAVVVATDISVYEPGPARPTGGAGAVAMLITRSA
SVPIRFEIGLRATCMGDTYDFFKPRVAIEYPTVRGQQTVDTFVGAMDECY
RRYAIRAKPADKRRFSIRRDVDYCVFHAPFNKMVQKSFARLVYNDFLNVL
EGEDSFFEPVEKYRNLPRESSHRNREAQRAFVKLSKDYYGKKCAPAAWLA
KEIGNCYTASLYSSLAALIVEKGNDLIGKRILLYSFGSGFASSMFSLRIT
APVDKVFLGRDLKERLDDRIIANAENYVRTLKERERDYGRFGYVPQASIE
DLFPGTWYLRGVQAEGERSYDQVPFR*

mRNA from alignment at tig00000120_pilon:268336..269766+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3134.t1 ID=Ggra3134.t1|Name=Ggra3134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000120_pilon:268336..269766+ (Gracilaria gracilis GNS1m male)
ATGACCTTGAGCTCAGTGACCTCCCCGAGTTCAACGCCAGATGCCCTCCA
AACAGCATCTTCCTCCTCAGGGTATCCCGTGCGCCTAACCGATGTCGGCA
TTCTACACATGGCCGTCTACATCCCGCGCACGGCTGTTGCTCAAGCAGAC
CTTGAGCGTTATGATAGGGCGTCCTCCGGGAAATACACCGTCGGTTTAGG
CCAGCTATACATGTCGTTCGTCTCGGATCGCGAAGACGTCATATCGTTGG
CGCTCACAGCCGTGTCCCAGCTGGTCCGCGACGCCGGTATCTCCTACTCT
GACATAGGCCGCCTTGAAGTCGGTACCGAGACTGTTCTAGACAAATCCAA
GTCCATAAAAACTAGTCTCATGCGCCTGTTCGAGGACTGTGGCAATAGCG
AAGTAGAAGGTCTTGATAACACCAACGCATGTTACGGTGGAACCGCTGCC
CTACTCAACACGGTAGCGTGGTGCGAGTCTTCCGCGTGGGATGGTCGCTA
CGCTGTCGTAGTTGCCACCGATATATCTGTGTACGAGCCAGGGCCGGCTC
GGCCGACCGGCGGCGCAGGAGCTGTGGCCATGTTAATTACACGCAGTGCT
TCCGTTCCTATCCGCTTTGAGATTGGCTTGCGCGCTACTTGTATGGGCGA
TACGTATGACTTCTTCAAGCCACGAGTAGCGATCGAGTATCCAACTGTTC
GCGGTCAGCAAACGGTCGATACGTTTGTTGGCGCCATGGATGAATGCTAT
CGACGATATGCTATCCGCGCAAAACCCGCAGACAAGCGTCGATTTAGCAT
CAGACGCGATGTTGATTATTGTGTGTTTCATGCCCCGTTCAACAAAATGG
TTCAGAAGTCTTTCGCTAGACTAGTTTACAATGACTTTTTAAATGTTTTG
GAGGGGGAAGATTCCTTTTTCGAACCTGTTGAGAAGTACAGAAACCTCCC
GAGGGAGTCAAGCCATCGAAATCGAGAAGCTCAGCGAGCGTTCGTCAAGC
TTTCTAAAGATTATTATGGGAAAAAGTGCGCGCCCGCCGCTTGGCTGGCA
AAGGAAATCGGAAACTGTTATACCGCCTCATTGTACTCGTCACTAGCAGC
TCTGATTGTTGAGAAAGGTAACGATCTTATTGGGAAACGTATACTCTTAT
ACTCTTTTGGATCTGGCTTTGCGTCATCTATGTTTTCGCTTCGTATAACA
GCACCCGTGGACAAAGTGTTTCTAGGAAGAGATTTGAAGGAGCGGCTTGA
TGACAGGATTATTGCAAATGCTGAAAACTATGTTCGTACTCTTAAAGAGA
GGGAGCGTGACTATGGAAGGTTTGGATACGTTCCCCAAGCAAGCATTGAG
GACCTATTTCCAGGTACATGGTATCTACGGGGGGTTCAAGCAGAAGGAGA
AAGAAGCTATGATCAAGTTCCCTTTCGATGA

Coding sequence (CDS) from alignment at tig00000120_pilon:268336..269766+

>Ggra3134.t1 ID=Ggra3134.t1|Name=Ggra3134.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000120_pilon:268336..269766+ (Gracilaria gracilis GNS1m male)
ATGACCTTGAGCTCAGTGACCTCCCCGAGTTCAACGCCAGATGCCCTCCA
AACAGCATCTTCCTCCTCAGGGTATCCCGTGCGCCTAACCGATGTCGGCA
TTCTACACATGGCCGTCTACATCCCGCGCACGGCTGTTGCTCAAGCAGAC
CTTGAGCGTTATGATAGGGCGTCCTCCGGGAAATACACCGTCGGTTTAGG
CCAGCTATACATGTCGTTCGTCTCGGATCGCGAAGACGTCATATCGTTGG
CGCTCACAGCCGTGTCCCAGCTGGTCCGCGACGCCGGTATCTCCTACTCT
GACATAGGCCGCCTTGAAGTCGGTACCGAGACTGTTCTAGACAAATCCAA
GTCCATAAAAACTAGTCTCATGCGCCTGTTCGAGGACTGTGGCAATAGCG
AAGTAGAAGGTCTTGATAACACCAACGCATGTTACGGTGGAACCGCTGCC
CTACTCAACACGGTAGCGTGGTGCGAGTCTTCCGCGTGGGATGGTCGCTA
CGCTGTCGTAGTTGCCACCGATATATCTGTGTACGAGCCAGGGCCGGCTC
GGCCGACCGGCGGCGCAGGAGCTGTGGCCATGTTAATTACACGCAGTGCT
TCCGTTCCTATCCGCTTTGAGATTGGCTTGCGCGCTACTTGTATGGGCGA
TACGTATGACTTCTTCAAGCCACGAGTAGCGATCGAGTATCCAACTGTTC
GCGGTCAGCAAACGGTCGATACGTTTGTTGGCGCCATGGATGAATGCTAT
CGACGATATGCTATCCGCGCAAAACCCGCAGACAAGCGTCGATTTAGCAT
CAGACGCGATGTTGATTATTGTGTGTTTCATGCCCCGTTCAACAAAATGG
TTCAGAAGTCTTTCGCTAGACTAGTTTACAATGACTTTTTAAATGTTTTG
GAGGGGGAAGATTCCTTTTTCGAACCTGTTGAGAAGTACAGAAACCTCCC
GAGGGAGTCAAGCCATCGAAATCGAGAAGCTCAGCGAGCGTTCGTCAAGC
TTTCTAAAGATTATTATGGGAAAAAGTGCGCGCCCGCCGCTTGGCTGGCA
AAGGAAATCGGAAACTGTTATACCGCCTCATTGTACTCGTCACTAGCAGC
TCTGATTGTTGAGAAAGGTAACGATCTTATTGGGAAACGTATACTCTTAT
ACTCTTTTGGATCTGGCTTTGCGTCATCTATGTTTTCGCTTCGTATAACA
GCACCCGTGGACAAAGTGTTTCTAGGAAGAGATTTGAAGGAGCGGCTTGA
TGACAGGATTATTGCAAATGCTGAAAACTATGTTCGTACTCTTAAAGAGA
GGGAGCGTGACTATGGAAGGTTTGGATACGTTCCCCAAGCAAGCATTGAG
GACCTATTTCCAGGTACATGGTATCTACGGGGGGTTCAAGCAGAAGGAGA
AAGAAGCTATGATCAAGTTCCCTTTCGATGA