Ggra3130.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3130.t1
Unique NameGgra3130.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:243935..244569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704432.1
Preferred nameUFC1
PFAMsUFC1
Max annot lvl2759|Eukaryota
KEGG koko:K12165
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031624,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070647,GO:0071568,GO:0071569,GO:0071704,GO:0140096,GO:1901564,GO:1990564,GO:1990592
Evalue3.66e-92
EggNOG OGsKOG3357@1|root,KOG3357@2759|Eukaryota
DescriptionUFM1 transferase activity
COG categoryS
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3130Ggra3130Gracilaria gracilis GNS1m malegenetig00000120_pilon 243935..244569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1Ggra3130.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 243935..244569 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1.start1Ggra3130.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 243935..243937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1.CDS1Ggra3130.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 243935..244054 +
Ggra3130.t1.CDS2Ggra3130.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 244126..244425 +
Ggra3130.t1.CDS3Ggra3130.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 244498..244569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1.exon1Ggra3130.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 243935..244054 +
Ggra3130.t1.exon2Ggra3130.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 244126..244425 +
Ggra3130.t1.exon3Ggra3130.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 244498..244569 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1.intron1Ggra3130.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 244055..244125 +
Ggra3130.t1.intron2Ggra3130.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 244426..244497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3130.t1.stop1Ggra3130.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 244567..244569 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3130.t1 ID=Ggra3130.t1|Name=Ggra3130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=164bp
MDDGTKETVNKLPLLSVRASPRDKDAWTARLKEELTALIQYVKINKEQDK
DWFQIECNKTGTRWNGKCWYYYEQIRYEFDLEFEIPVTYPASAPELKLPQ
LEGLTAKMYRGGKICQTIHFQPLWSRNVPRFGIAHSLALSLGPWLAAEIP
DLVGRGVIDSFKK*
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spliced messenger RNA

>Ggra3130.t1 ID=Ggra3130.t1|Name=Ggra3130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000120_pilon:243935..244569+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGGAACTAAGGAAACTGTCAATAAACTTCCGTTGCTTAGCGT
GCGAGCTTCACCACGGGATAAGGATGCTTGGACTGCGAGGTTGAAGGAAG
AGTTGACAGCTCTCATACAGTACGTGAAAATCAACAAAGAACAAGATAAA
GACTGGTTCCAGATCGAATGTAACAAAACAGGAACTAGATGGAATGGGAA
ATGTTGGTACTATTACGAGCAAATACGATACGAATTCGACCTTGAATTCG
AGATTCCTGTAACATATCCTGCTTCAGCTCCAGAGCTGAAGCTTCCTCAA
CTCGAAGGATTGACTGCAAAGATGTACCGCGGCGGCAAGATATGCCAGAC
CATTCATTTCCAGCCCCTCTGGTCGAGAAACGTCCCCCGTTTTGGCATTG
CGCACTCCCTTGCGTTATCGCTCGGACCATGGTTGGCTGCTGAGATACCT
GACTTGGTCGGCAGAGGCGTAATTGATAGTTTCAAGAAATGA
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protein sequence of Ggra3130.t1

>Ggra3130.t1 ID=Ggra3130.t1|Name=Ggra3130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MDDGTKETVNKLPLLSVRASPRDKDAWTARLKEELTALIQYVKINKEQDK
DWFQIECNKTGTRWNGKCWYYYEQIRYEFDLEFEIPVTYPASAPELKLPQ
LEGLTAKMYRGGKICQTIHFQPLWSRNVPRFGIAHSLALSLGPWLAAEIP
DLVGRGVIDSFKK*
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mRNA from alignment at tig00000120_pilon:243935..244569+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3130.t1 ID=Ggra3130.t1|Name=Ggra3130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=635bp|location=Sequence derived from alignment at tig00000120_pilon:243935..244569+ (Gracilaria gracilis GNS1m male)
ATGGATGACGGAACTAAGGAAACTGTCAATAAACTTCCGTTGCTTAGCGT
GCGAGCTTCACCACGGGATAAGGATGCTTGGACTGCGAGGTTGAAGGAAG
AGTTGACAGCTCTCATACAGGTAATTTAGAGCGCTTTCTTCTCTTCACTA
TTTTTTCATCTTTCAACTAACGTAAACGATTCTCTGTGCAGTACGTGAAA
ATCAACAAAGAACAAGATAAAGACTGGTTCCAGATCGAATGTAACAAAAC
AGGAACTAGATGGAATGGGAAATGTTGGTACTATTACGAGCAAATACGAT
ACGAATTCGACCTTGAATTCGAGATTCCTGTAACATATCCTGCTTCAGCT
CCAGAGCTGAAGCTTCCTCAACTCGAAGGATTGACTGCAAAGATGTACCG
CGGCGGCAAGATATGCCAGACCATTCATTTCCAGCCCCTCTGGTCGAGAA
ACGTCCCCCGTTTTGGCATTGCGCACTCCCTTGCGTTATCGGTAAGTTCT
CACCGCCGTTTGCTCATATTGTAGTGGTTACTGATGACATGTTTTGTACT
CCTTTGTTTGCAGCTCGGACCATGGTTGGCTGCTGAGATACCTGACTTGG
TCGGCAGAGGCGTAATTGATAGTTTCAAGAAATGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:243935..244569+

>Ggra3130.t1 ID=Ggra3130.t1|Name=Ggra3130.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000120_pilon:243935..244569+ (Gracilaria gracilis GNS1m male)
ATGGATGACGGAACTAAGGAAACTGTCAATAAACTTCCGTTGCTTAGCGT
GCGAGCTTCACCACGGGATAAGGATGCTTGGACTGCGAGGTTGAAGGAAG
AGTTGACAGCTCTCATACAGTACGTGAAAATCAACAAAGAACAAGATAAA
GACTGGTTCCAGATCGAATGTAACAAAACAGGAACTAGATGGAATGGGAA
ATGTTGGTACTATTACGAGCAAATACGATACGAATTCGACCTTGAATTCG
AGATTCCTGTAACATATCCTGCTTCAGCTCCAGAGCTGAAGCTTCCTCAA
CTCGAAGGATTGACTGCAAAGATGTACCGCGGCGGCAAGATATGCCAGAC
CATTCATTTCCAGCCCCTCTGGTCGAGAAACGTCCCCCGTTTTGGCATTG
CGCACTCCCTTGCGTTATCGCTCGGACCATGGTTGGCTGCTGAGATACCT
GACTTGGTCGGCAGAGGCGTAATTGATAGTTTCAAGAAATGA
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