Ggra3128.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3128.t1
Unique Name	Ggra3128.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:239498..241477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo5g136710.1
PFAMs	ATE_C,ATE_N
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00064
KEGG ko	ko:K00685
KEGG Reaction	R03862
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
Evalue	2.1e-64
EggNOG OGs	COG2935@1\|root,KOG1193@2759\|Eukaryota,37PUQ@33090\|Viridiplantae,3GENZ@35493\|Streptophyta,3HNQS@3699\|Brassicales
EC	2.3.2.8
Description	Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway
COG category	O
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3128	Ggra3128	Gracilaria gracilis GNS1m male	gene	tig00000120_pilon 239498..241477 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3128.t1.start1	Ggra3128.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000120_pilon 239498..239500 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3128.t1.CDS1	Ggra3128.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000120_pilon 239498..241477 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3128.t1.exon1	Ggra3128.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000120_pilon 239498..241477 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3128.t1.stop1	Ggra3128.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000120_pilon 241475..241477 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3128.t1	Ggra3128.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000120_pilon 239498..241477 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:239498..241477+
coding sequence from alignment at tig00000120_pilon:239498..241477+

mRNA sequence

>Ggra3128.t1 ID=Ggra3128.t1|Name=Ggra3128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp
MIQSAQVPRSRVIHLGSDSSRCGYCRRSDGSHNYAVWALRLHVEDYQELL
DAGWRRSGNYLYRPHLSNTCCPPYVIRLDATNFKTSSTHKRVLKRLRHAS
SSCVINQPHVQREKGKERRKQRMHPLSAASDQKLHTIRVAIVDAAQQLAR
ANDLNPALPTEHVQEATSKFRLFPPRQPAKKASSGSKRKERLRERPAHVD
QNDVTRRQRNDLPNMVSNMALVLAAVERRCGTQPSSASERSNPERRKDHD
PLKRQMRIANALQRILSQNQSVCKVSTVGVTNPGFLNFWWNPTYDPSLGE
GEKADKGNDCTHSSDTLFHVKQVQPLPSISGHKWRAKSSSMFKSIDVSDV
SEFDVMSDVDPGQRSCPSRASTGSPLPEAKQPEVRSRGQVSNSSNFTMQM
VPSEFREESYELFRRYQMSIHHERASQCTKDIYTRFLVDSPLTRYQSASN
PEEKYGSHHLLYRIAGRLFAVGVVDVLPRCLSSVYLFYDPDFAKLSPGTL
SALKEIDWIKSVSHIYPSLRYYYMGYYIHSCPKMRYKASFYPSELLCEVS
KNWVPVSEARVIMDSVGERVLRLAPPEVAPAPGASYFQFDDEELGRLVDG
AILHVGNADDEVMRMLSFKALRETLGSRCPEQVNTIRSGIEAFLRHVGKR
NCGYYIHML*

spliced messenger RNA

>Ggra3128.t1 ID=Ggra3128.t1|Name=Ggra3128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000120_pilon:239498..241477+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCAGTCCGCTCAGGTTCCCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAATT
ACGCCGTCTGGGCTCTCCGACTGCATGTCGAGGACTACCAGGAGCTCCTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTTATCGTCCCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AAACGTCTAGTACCCATAAGCGCGTGCTCAAGCGCCTACGTCACGCGTCG
TCGTCGTGTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
ACGACGGAAGCAACGCATGCACCCCTTGTCCGCCGCCTCGGATCAAAAGT
TGCACACTATTCGAGTTGCTATCGTTGATGCTGCCCAACAACTTGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAACTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGGCTATTCCCCCCGCGCCAGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGAGCGGCTTCGAGAAAGACCAGCCCATGTCGAC
CAAAACGATGTAACTCGGCGGCAGCGGAATGATTTGCCGAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCGTAGAGAGAAGATGTGGCACGCAGC
CGTCGTCGGCCAGTGAGCGGTCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGCTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTATGTAAGGTTTCAACTGTTGGTGTCACGAACCCAG
GATTTCTCAACTTTTGGTGGAATCCAACATATGACCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAGGGGAACGACTGTACTCACTCGAGTGACACATT
GTTTCACGTGAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCATCTATGTTTAAAAGCATCGACGTTAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCCCGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGCCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCGTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACCAAGGACATTTACA
CCAGGTTCCTTGTGGACAGCCCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGTATGGGTCACACCACCTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGGACGTACTGCCACGATGCCTTAGCTCTG
TTTATCTTTTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATCCCATATATACCC
ATCTCTACGGTATTATTACATGGGTTACTACATTCACTCTTGCCCGAAAA
TGAGGTACAAAGCATCCTTTTACCCATCAGAACTTCTGTGCGAAGTTTCG
AAGAATTGGGTGCCAGTTTCAGAAGCACGGGTGATCATGGACAGCGTCGG
AGAGCGCGTACTGAGACTTGCTCCACCAGAAGTTGCCCCGGCGCCGGGGG
CTTCGTATTTCCAGTTTGACGACGAAGAACTGGGACGCTTGGTCGATGGA
GCGATCCTGCATGTTGGAAATGCTGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTAGGTTCTCGATGTCCAGAGCAGGTCA
ATACAATACGCAGCGGCATCGAAGCGTTCTTACGTCACGTAGGAAAGCGG
AATTGTGGGTACTACATACACATGTTATGA

protein sequence of Ggra3128.t1

>Ggra3128.t1 ID=Ggra3128.t1|Name=Ggra3128.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=660bp
MIQSAQVPRSRVIHLGSDSSRCGYCRRSDGSHNYAVWALRLHVEDYQELL
DAGWRRSGNYLYRPHLSNTCCPPYVIRLDATNFKTSSTHKRVLKRLRHAS
SSCVINQPHVQREKGKERRKQRMHPLSAASDQKLHTIRVAIVDAAQQLAR
ANDLNPALPTEHVQEATSKFRLFPPRQPAKKASSGSKRKERLRERPAHVD
QNDVTRRQRNDLPNMVSNMALVLAAVERRCGTQPSSASERSNPERRKDHD
PLKRQMRIANALQRILSQNQSVCKVSTVGVTNPGFLNFWWNPTYDPSLGE
GEKADKGNDCTHSSDTLFHVKQVQPLPSISGHKWRAKSSSMFKSIDVSDV
SEFDVMSDVDPGQRSCPSRASTGSPLPEAKQPEVRSRGQVSNSSNFTMQM
VPSEFREESYELFRRYQMSIHHERASQCTKDIYTRFLVDSPLTRYQSASN
PEEKYGSHHLLYRIAGRLFAVGVVDVLPRCLSSVYLFYDPDFAKLSPGTL
SALKEIDWIKSVSHIYPSLRYYYMGYYIHSCPKMRYKASFYPSELLCEVS
KNWVPVSEARVIMDSVGERVLRLAPPEVAPAPGASYFQFDDEELGRLVDG
AILHVGNADDEVMRMLSFKALRETLGSRCPEQVNTIRSGIEAFLRHVGKR
NCGYYIHML*

mRNA from alignment at tig00000120_pilon:239498..241477+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3128.t1 ID=Ggra3128.t1|Name=Ggra3128.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000120_pilon:239498..241477+ (Gracilaria gracilis GNS1m male)
ATGATTCAGTCCGCTCAGGTTCCCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAATT
ACGCCGTCTGGGCTCTCCGACTGCATGTCGAGGACTACCAGGAGCTCCTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTTATCGTCCCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AAACGTCTAGTACCCATAAGCGCGTGCTCAAGCGCCTACGTCACGCGTCG
TCGTCGTGTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
ACGACGGAAGCAACGCATGCACCCCTTGTCCGCCGCCTCGGATCAAAAGT
TGCACACTATTCGAGTTGCTATCGTTGATGCTGCCCAACAACTTGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAACTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGGCTATTCCCCCCGCGCCAGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGAGCGGCTTCGAGAAAGACCAGCCCATGTCGAC
CAAAACGATGTAACTCGGCGGCAGCGGAATGATTTGCCGAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCGTAGAGAGAAGATGTGGCACGCAGC
CGTCGTCGGCCAGTGAGCGGTCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGCTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTATGTAAGGTTTCAACTGTTGGTGTCACGAACCCAG
GATTTCTCAACTTTTGGTGGAATCCAACATATGACCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAGGGGAACGACTGTACTCACTCGAGTGACACATT
GTTTCACGTGAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCATCTATGTTTAAAAGCATCGACGTTAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCCCGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGCCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCGTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACCAAGGACATTTACA
CCAGGTTCCTTGTGGACAGCCCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGTATGGGTCACACCACCTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGGACGTACTGCCACGATGCCTTAGCTCTG
TTTATCTTTTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATCCCATATATACCC
ATCTCTACGGTATTATTACATGGGTTACTACATTCACTCTTGCCCGAAAA
TGAGGTACAAAGCATCCTTTTACCCATCAGAACTTCTGTGCGAAGTTTCG
AAGAATTGGGTGCCAGTTTCAGAAGCACGGGTGATCATGGACAGCGTCGG
AGAGCGCGTACTGAGACTTGCTCCACCAGAAGTTGCCCCGGCGCCGGGGG
CTTCGTATTTCCAGTTTGACGACGAAGAACTGGGACGCTTGGTCGATGGA
GCGATCCTGCATGTTGGAAATGCTGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTAGGTTCTCGATGTCCAGAGCAGGTCA
ATACAATACGCAGCGGCATCGAAGCGTTCTTACGTCACGTAGGAAAGCGG
AATTGTGGGTACTACATACACATGTTATGA

Coding sequence (CDS) from alignment at tig00000120_pilon:239498..241477+

>Ggra3128.t1 ID=Ggra3128.t1|Name=Ggra3128.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1980bp|location=Sequence derived from alignment at tig00000120_pilon:239498..241477+ (Gracilaria gracilis GNS1m male)
ATGATTCAGTCCGCTCAGGTTCCCCGTTCTCGCGTAATTCACTTGGGCTC
TGATTCGTCGCGCTGCGGCTATTGTCGCAGGAGTGATGGCAGCCATAATT
ACGCCGTCTGGGCTCTCCGACTGCATGTCGAGGACTACCAGGAGCTCCTG
GATGCTGGATGGCGTCGAAGCGGTAATTATCTTTATCGTCCCCATCTGAG
CAACACGTGCTGCCCGCCGTACGTCATCCGACTTGACGCCACCAATTTCA
AAACGTCTAGTACCCATAAGCGCGTGCTCAAGCGCCTACGTCACGCGTCG
TCGTCGTGTGTCATCAACCAGCCGCATGTTCAAAGGGAGAAGGGAAAGGA
ACGACGGAAGCAACGCATGCACCCCTTGTCCGCCGCCTCGGATCAAAAGT
TGCACACTATTCGAGTTGCTATCGTTGATGCTGCCCAACAACTTGCCCGG
GCTAATGATCTGAACCCTGCGTTGCCAACTGAGCACGTGCAAGAGGCTAC
ATCTAAGTTTAGGCTATTCCCCCCGCGCCAGCCAGCGAAGAAGGCAAGCA
GTGGTTCTAAACGGAAGGAGCGGCTTCGAGAAAGACCAGCCCATGTCGAC
CAAAACGATGTAACTCGGCGGCAGCGGAATGATTTGCCGAACATGGTGAG
CAATATGGCCTTGGTTTTGGCAGCCGTAGAGAGAAGATGTGGCACGCAGC
CGTCGTCGGCCAGTGAGCGGTCAAATCCAGAGAGACGGAAAGATCATGAC
CCCCTAAAGCGACAGATGCGCATTGCGAATGCTCTTCAGCGCATCTTAAG
CCAAAACCAATCTGTATGTAAGGTTTCAACTGTTGGTGTCACGAACCCAG
GATTTCTCAACTTTTGGTGGAATCCAACATATGACCCTTCCCTTGGGGAA
GGCGAAAAGGCAGACAAGGGGAACGACTGTACTCACTCGAGTGACACATT
GTTTCACGTGAAGCAGGTTCAGCCACTACCCAGCATATCTGGACACAAAT
GGAGAGCGAAGAGTTCATCTATGTTTAAAAGCATCGACGTTAGTGACGTC
AGCGAGTTTGATGTGATGAGTGATGTTGATCCCGGCCAAAGATCATGTCC
TTCTCGTGCCAGTACAGGCTCCCCTCTGCCCGAAGCCAAACAGCCAGAGG
TACGAAGTCGAGGGCAAGTATCAAATTCGAGCAATTTCACAATGCAAATG
GTGCCGTCGGAATTCCGTGAAGAGTCGTATGAGCTCTTTCGGAGATACCA
AATGTCAATACATCATGAACGAGCATCGCAATGCACCAAGGACATTTACA
CCAGGTTCCTTGTGGACAGCCCGTTGACGAGGTATCAATCTGCTTCCAAC
CCAGAGGAAAAGTATGGGTCACACCACCTTCTTTACCGAATCGCTGGTAG
GCTTTTCGCAGTTGGCGTTGTGGACGTACTGCCACGATGCCTTAGCTCTG
TTTATCTTTTTTACGATCCTGATTTTGCCAAGTTGTCACCTGGAACACTT
TCCGCTCTTAAGGAGATTGATTGGATCAAGAGCGTATCCCATATATACCC
ATCTCTACGGTATTATTACATGGGTTACTACATTCACTCTTGCCCGAAAA
TGAGGTACAAAGCATCCTTTTACCCATCAGAACTTCTGTGCGAAGTTTCG
AAGAATTGGGTGCCAGTTTCAGAAGCACGGGTGATCATGGACAGCGTCGG
AGAGCGCGTACTGAGACTTGCTCCACCAGAAGTTGCCCCGGCGCCGGGGG
CTTCGTATTTCCAGTTTGACGACGAAGAACTGGGACGCTTGGTCGATGGA
GCGATCCTGCATGTTGGAAATGCTGATGACGAAGTAATGAGAATGTTATC
TTTCAAGGCTCTTAGGGAGACACTAGGTTCTCGATGTCCAGAGCAGGTCA
ATACAATACGCAGCGGCATCGAAGCGTTCTTACGTCACGTAGGAAAGCGG
AATTGTGGGTACTACATACACATGTTATGA