Ggra3124.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3124.t1
Unique NameGgra3124.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:229432..229863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3124Ggra3124Gracilaria gracilis GNS1m malegenetig00000120_pilon 229432..229863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1Ggra3124.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 229432..229863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1.start1Ggra3124.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 229432..229434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1.CDS1Ggra3124.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 229432..229616 +
Ggra3124.t1.CDS2Ggra3124.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 229701..229764 +
Ggra3124.t1.CDS3Ggra3124.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 229852..229863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1.exon1Ggra3124.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 229432..229616 +
Ggra3124.t1.exon2Ggra3124.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 229701..229764 +
Ggra3124.t1.exon3Ggra3124.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 229852..229863 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1.intron1Ggra3124.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 229617..229700 +
Ggra3124.t1.intron2Ggra3124.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 229765..229851 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3124.t1.stop1Ggra3124.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 229861..229863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3124.t1 ID=Ggra3124.t1|Name=Ggra3124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=87bp
MGNLCCGEDDAPALKGAKQTVSGGAPPRNVMTPTTAERRDQALKAAEERA
RKGAVRGTQRQHPKPKRKSFDRPPTAAGGADIADWM*
back to top

spliced messenger RNA

>Ggra3124.t1 ID=Ggra3124.t1|Name=Ggra3124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp|location=Sequence derived from alignment at tig00000120_pilon:229432..229863+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAATCTGTGCTGCGGCGAGGACGACGCGCCCGCGCTCAAGGGCGC
CAAACAAACGGTATCCGGTGGCGCGCCGCCACGCAACGTGATGACGCCGA
CGACGGCGGAGCGTCGCGACCAGGCGCTCAAGGCGGCCGAAGAACGCGCG
CGAAAAGGCGCCGTACGCGGAACGCAACGTCAACACCCGAAACCGAAGCG
AAAGTCGTTCGATAGGCCGCCCACCGCTGCTGGCGGCGCCGACATAGCCG
ACTGGATGTGA
back to top

protein sequence of Ggra3124.t1

>Ggra3124.t1 ID=Ggra3124.t1|Name=Ggra3124.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=87bp
MGNLCCGEDDAPALKGAKQTVSGGAPPRNVMTPTTAERRDQALKAAEERA
RKGAVRGTQRQHPKPKRKSFDRPPTAAGGADIADWM*
back to top

mRNA from alignment at tig00000120_pilon:229432..229863+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3124.t1 ID=Ggra3124.t1|Name=Ggra3124.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp|location=Sequence derived from alignment at tig00000120_pilon:229432..229863+ (Gracilaria gracilis GNS1m male)
ATGGGCAATCTGTGCTGCGGCGAGGACGACGCGCCCGCGCTCAAGGGCGC
CAAACAAACGGTATCCGGTGGCGCGCCGCCACGCAACGTGATGACGCCGA
CGACGGCGGAGCGTCGCGACCAGGCGCTCAAGGCGGCCGAAGAACGCGCG
CGAAAAGGCGCCGTACGCGGAACGCAACGTCAACAGTACGTATCTGGTCG
CAACCACTTCCAAACGCAACAGCGTGAGCGTTGGCGTCTGACATGTTCGT
CTCCGTCCTCCCAAACCAGCCCGAAACCGAAGCGAAAGTCGTTCGATAGG
CCGCCCACCGCTGCTGGCGGCGCCGACATAGCCGTAAGTTGAAGCTCTCG
CGCCAAATATTGTTACAACAAGGCGCCACTAACAACAAGCCACGTGTCGC
GCGTTGCGCGCCTCGTACAGGACTGGATGTGA
back to top

Coding sequence (CDS) from alignment at tig00000120_pilon:229432..229863+

>Ggra3124.t1 ID=Ggra3124.t1|Name=Ggra3124.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=261bp|location=Sequence derived from alignment at tig00000120_pilon:229432..229863+ (Gracilaria gracilis GNS1m male)
ATGGGCAATCTGTGCTGCGGCGAGGACGACGCGCCCGCGCTCAAGGGCGC
CAAACAAACGGTATCCGGTGGCGCGCCGCCACGCAACGTGATGACGCCGA
CGACGGCGGAGCGTCGCGACCAGGCGCTCAAGGCGGCCGAAGAACGCGCG
CGAAAAGGCGCCGTACGCGGAACGCAACGTCAACACCCGAAACCGAAGCG
AAAGTCGTTCGATAGGCCGCCCACCGCTGCTGGCGGCGCCGACATAGCCG
ACTGGATGTGA
back to top