Ggra3119.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3119.t1
Unique NameGgra3119.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:201098..202331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38445
PFAMsZip
Max annot lvl2836|Bacillariophyta
KEGG koko:K07238
KEGG TC2.A.5.5
Evalue2.47e-66
EggNOG OGsCOG0428@1|root,KOG2474@2759|Eukaryota,2XC0Z@2836|Bacillariophyta
DescriptionZIP Zinc transporter
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3119Ggra3119Gracilaria gracilis GNS1m malegenetig00000120_pilon 201098..202331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1Ggra3119.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 201098..202331 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1.stop1Ggra3119.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 201098..201100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1.CDS1Ggra3119.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 201098..201505 -
Ggra3119.t1.CDS2Ggra3119.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 201590..202016 -
Ggra3119.t1.CDS3Ggra3119.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 202084..202331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1.exon1Ggra3119.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 201098..201505 -
Ggra3119.t1.exon2Ggra3119.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 201590..202016 -
Ggra3119.t1.exon3Ggra3119.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 202084..202331 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1.intron1Ggra3119.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 201506..201589 -
Ggra3119.t1.intron2Ggra3119.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 202017..202083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3119.t1.start1Ggra3119.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 202329..202331 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3119.t1 ID=Ggra3119.t1|Name=Ggra3119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MDTCVAETESGNVGLAFGIVTAAGLSTSLGAALAFCMPYKRDAKNLLLAA
CLSIAAGVMVYVSFVEIFAGKAIDYFADCVREQLAYLYATLCFFAGILLT
YLFDVSLHLFEAWISKRKSSREANKQPLQSDSHHDDTPSSSAKSLPSVVH
PVAQSHQNNDQLNSEVVLPVFDSSSPAEPQDEPVEIDPHVGHDGQMVANV
YQTHSHDAKALIRMGIFAGIALAFHNFPEGLATFVAVLVDPSIGISVAIA
IGIHNIPEGICVAMPIYYATGSRYKAFMWATLSGMTELIGAFLGWIVLRK
VITPLVYGILFGVVAGMMIYISIKELLPTAHRYDPEDKVTTYSFLAGMLV
MAISLVLFMF*
back to top

spliced messenger RNA

>Ggra3119.t1 ID=Ggra3119.t1|Name=Ggra3119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000120_pilon:201098..202331- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCTGCGTCGCGGAAACAGAAAGCGGAAATGTCGGGCTTGCGTT
TGGTATTGTTACGGCTGCTGGCCTCAGCACTTCGCTCGGCGCCGCTTTAG
CTTTTTGCATGCCGTACAAACGTGATGCAAAGAATCTCTTACTTGCAGCA
TGTCTCTCCATCGCCGCGGGCGTCATGGTGTACGTCTCCTTTGTGGAGAT
CTTTGCCGGCAAGGCCATCGATTATTTCGCAGATTGTGTTCGAGAACAGC
TCGCTTACCTGTACGCAACTCTGTGCTTCTTCGCTGGAATTCTGCTAACA
TACTTGTTTGATGTTTCGTTGCACCTCTTCGAAGCATGGATCTCAAAACG
AAAATCTTCTCGTGAAGCAAACAAACAACCTCTTCAAAGCGATTCTCACC
ACGATGACACACCATCTTCATCTGCTAAATCACTTCCTTCAGTGGTTCAT
CCTGTAGCCCAATCCCATCAAAACAATGATCAGCTCAACTCAGAAGTAGT
TCTGCCAGTCTTTGATTCCAGCTCTCCTGCTGAGCCCCAAGACGAGCCTG
TTGAAATTGATCCCCATGTTGGTCACGATGGTCAAATGGTGGCAAATGTC
TACCAAACCCATTCCCATGATGCCAAAGCCTTAATAAGGATGGGCATCTT
CGCGGGAATCGCCCTCGCGTTTCACAACTTTCCAGAGGGCCTCGCAACCT
TCGTCGCAGTACTGGTAGATCCGTCGATCGGTATTAGTGTGGCTATTGCG
ATTGGGATTCATAACATCCCCGAGGGAATATGTGTCGCCATGCCGATTTA
TTATGCCACCGGATCCCGATACAAGGCTTTCATGTGGGCAACGTTATCAG
GTATGACCGAGCTTATTGGTGCTTTCCTTGGATGGATCGTTTTACGAAAA
GTTATAACCCCATTGGTATACGGCATCCTTTTCGGTGTTGTAGCCGGGAT
GATGATTTATATATCCATCAAGGAACTACTCCCAACTGCTCATCGCTACG
ACCCAGAAGACAAAGTAACCACGTACTCCTTCTTGGCGGGGATGTTGGTC
ATGGCTATTTCGCTTGTTTTGTTCATGTTCTAA
back to top

protein sequence of Ggra3119.t1

>Ggra3119.t1 ID=Ggra3119.t1|Name=Ggra3119.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MDTCVAETESGNVGLAFGIVTAAGLSTSLGAALAFCMPYKRDAKNLLLAA
CLSIAAGVMVYVSFVEIFAGKAIDYFADCVREQLAYLYATLCFFAGILLT
YLFDVSLHLFEAWISKRKSSREANKQPLQSDSHHDDTPSSSAKSLPSVVH
PVAQSHQNNDQLNSEVVLPVFDSSSPAEPQDEPVEIDPHVGHDGQMVANV
YQTHSHDAKALIRMGIFAGIALAFHNFPEGLATFVAVLVDPSIGISVAIA
IGIHNIPEGICVAMPIYYATGSRYKAFMWATLSGMTELIGAFLGWIVLRK
VITPLVYGILFGVVAGMMIYISIKELLPTAHRYDPEDKVTTYSFLAGMLV
MAISLVLFMF*
back to top

mRNA from alignment at tig00000120_pilon:201098..202331-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3119.t1 ID=Ggra3119.t1|Name=Ggra3119.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1234bp|location=Sequence derived from alignment at tig00000120_pilon:201098..202331- (Gracilaria gracilis GNS1m male)
ATGGATACCTGCGTCGCGGAAACAGAAAGCGGAAATGTCGGGCTTGCGTT
TGGTATTGTTACGGCTGCTGGCCTCAGCACTTCGCTCGGCGCCGCTTTAG
CTTTTTGCATGCCGTACAAACGTGATGCAAAGAATCTCTTACTTGCAGCA
TGTCTCTCCATCGCCGCGGGCGTCATGGTGTACGTCTCCTTTGTGGAGAT
CTTTGCCGGCAAGGCCATCGATTATTTCGCAGATTGTGTTCGAGAACAGT
ACGTCAACATGTCCTTCACTGCCGTCTGTTTCTTGTCATTAACATCTCTC
GCTCTTTCCAACAAGGCTCGCTTACCTGTACGCAACTCTGTGCTTCTTCG
CTGGAATTCTGCTAACATACTTGTTTGATGTTTCGTTGCACCTCTTCGAA
GCATGGATCTCAAAACGAAAATCTTCTCGTGAAGCAAACAAACAACCTCT
TCAAAGCGATTCTCACCACGATGACACACCATCTTCATCTGCTAAATCAC
TTCCTTCAGTGGTTCATCCTGTAGCCCAATCCCATCAAAACAATGATCAG
CTCAACTCAGAAGTAGTTCTGCCAGTCTTTGATTCCAGCTCTCCTGCTGA
GCCCCAAGACGAGCCTGTTGAAATTGATCCCCATGTTGGTCACGATGGTC
AAATGGTGGCAAATGTCTACCAAACCCATTCCCATGATGCCAAAGCCTTA
ATAAGGATGGGCATCTTCGCGGGAATCGCCCTCGCGTTTCACGTACGTTT
CTCTCTCCACATACTTCTTCGTGCTTCAGCTCTAACGTGGTTGCCCTATA
CGATTGCTTGATTGAAATTACAACAGAACTTTCCAGAGGGCCTCGCAACC
TTCGTCGCAGTACTGGTAGATCCGTCGATCGGTATTAGTGTGGCTATTGC
GATTGGGATTCATAACATCCCCGAGGGAATATGTGTCGCCATGCCGATTT
ATTATGCCACCGGATCCCGATACAAGGCTTTCATGTGGGCAACGTTATCA
GGTATGACCGAGCTTATTGGTGCTTTCCTTGGATGGATCGTTTTACGAAA
AGTTATAACCCCATTGGTATACGGCATCCTTTTCGGTGTTGTAGCCGGGA
TGATGATTTATATATCCATCAAGGAACTACTCCCAACTGCTCATCGCTAC
GACCCAGAAGACAAAGTAACCACGTACTCCTTCTTGGCGGGGATGTTGGT
CATGGCTATTTCGCTTGTTTTGTTCATGTTCTAA
back to top

Coding sequence (CDS) from alignment at tig00000120_pilon:201098..202331-

>Ggra3119.t1 ID=Ggra3119.t1|Name=Ggra3119.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000120_pilon:201098..202331- (Gracilaria gracilis GNS1m male)
ATGGATACCTGCGTCGCGGAAACAGAAAGCGGAAATGTCGGGCTTGCGTT
TGGTATTGTTACGGCTGCTGGCCTCAGCACTTCGCTCGGCGCCGCTTTAG
CTTTTTGCATGCCGTACAAACGTGATGCAAAGAATCTCTTACTTGCAGCA
TGTCTCTCCATCGCCGCGGGCGTCATGGTGTACGTCTCCTTTGTGGAGAT
CTTTGCCGGCAAGGCCATCGATTATTTCGCAGATTGTGTTCGAGAACAGC
TCGCTTACCTGTACGCAACTCTGTGCTTCTTCGCTGGAATTCTGCTAACA
TACTTGTTTGATGTTTCGTTGCACCTCTTCGAAGCATGGATCTCAAAACG
AAAATCTTCTCGTGAAGCAAACAAACAACCTCTTCAAAGCGATTCTCACC
ACGATGACACACCATCTTCATCTGCTAAATCACTTCCTTCAGTGGTTCAT
CCTGTAGCCCAATCCCATCAAAACAATGATCAGCTCAACTCAGAAGTAGT
TCTGCCAGTCTTTGATTCCAGCTCTCCTGCTGAGCCCCAAGACGAGCCTG
TTGAAATTGATCCCCATGTTGGTCACGATGGTCAAATGGTGGCAAATGTC
TACCAAACCCATTCCCATGATGCCAAAGCCTTAATAAGGATGGGCATCTT
CGCGGGAATCGCCCTCGCGTTTCACAACTTTCCAGAGGGCCTCGCAACCT
TCGTCGCAGTACTGGTAGATCCGTCGATCGGTATTAGTGTGGCTATTGCG
ATTGGGATTCATAACATCCCCGAGGGAATATGTGTCGCCATGCCGATTTA
TTATGCCACCGGATCCCGATACAAGGCTTTCATGTGGGCAACGTTATCAG
GTATGACCGAGCTTATTGGTGCTTTCCTTGGATGGATCGTTTTACGAAAA
GTTATAACCCCATTGGTATACGGCATCCTTTTCGGTGTTGTAGCCGGGAT
GATGATTTATATATCCATCAAGGAACTACTCCCAACTGCTCATCGCTACG
ACCCAGAAGACAAAGTAACCACGTACTCCTTCTTGGCGGGGATGTTGGTC
ATGGCTATTTCGCTTGTTTTGTTCATGTTCTAA
back to top