Ggra3117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3117.t1
Unique NameGgra3117.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:198612..199532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3117Ggra3117Gracilaria gracilis GNS1m malegenetig00000120_pilon 198612..199532 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3117.t1.start1Ggra3117.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 198612..198614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3117.t1.CDS1Ggra3117.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 198612..199532 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3117.t1.exon1Ggra3117.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 198612..199532 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3117.t1.stop1Ggra3117.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 199530..199532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3117.t1Ggra3117.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 198612..199532 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3117.t1 ID=Ggra3117.t1|Name=Ggra3117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MEYVNNMGMFDDVMAVLSPEVAMKVRRTAIRAGVQSAEGGTLESIRLTGT
EERQSVRSEARRTGRRVVHRLGTKVLGLIRAVPERVGRRVAACFGNLNGM
MGRGRDDRKEEEADGGVEEVSTEESVGEESVLEEVVGEVVVGEGFMGEGF
VEEGWAEAEEPWNPDTDPAVLMFEAAEAAEGWKWHPHFDHDALKRNDEKA
WEEFNEWWDEFLKPLPITKVDGTEVEAFLKREKLERERLERLKRERLERA
NPFTDSDGSLDSVVAYVGDEGWAETEEVEFWGTVPSVRKEFVREEVERIE
AAMKAQ*
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spliced messenger RNA

>Ggra3117.t1 ID=Ggra3117.t1|Name=Ggra3117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000120_pilon:198612..199532+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATACGTCAACAACATGGGTATGTTTGACGATGTAATGGCTGTCTT
GAGTCCGGAAGTGGCCATGAAGGTGAGGAGGACTGCAATTAGGGCGGGGG
TCCAGAGTGCAGAAGGCGGGACGCTCGAAAGTATTCGGTTGACGGGGACC
GAAGAGCGTCAGAGCGTCCGCTCTGAAGCACGACGGACAGGGAGAAGAGT
CGTCCATCGGCTGGGGACGAAAGTGCTGGGGTTGATCAGGGCAGTGCCTG
AGCGCGTGGGGCGACGCGTGGCGGCGTGTTTTGGGAACTTGAATGGGATG
ATGGGAAGGGGTAGGGATGATCGGAAGGAGGAAGAAGCTGACGGGGGAGT
GGAGGAAGTGTCGACGGAGGAGTCGGTAGGGGAGGAGTCGGTATTGGAGG
AGGTTGTGGGGGAGGTGGTTGTTGGGGAGGGGTTTATGGGGGAGGGTTTT
GTGGAGGAGGGTTGGGCGGAGGCTGAGGAGCCGTGGAATCCGGATACGGA
CCCGGCAGTGTTGATGTTTGAGGCGGCGGAAGCGGCGGAAGGGTGGAAGT
GGCATCCGCATTTCGACCACGACGCGCTCAAACGCAACGACGAGAAGGCG
TGGGAGGAGTTCAACGAGTGGTGGGACGAGTTTCTGAAGCCACTTCCAAT
TACCAAGGTGGACGGCACGGAAGTCGAGGCTTTTCTCAAGCGAGAAAAAC
TGGAACGGGAAAGGCTAGAAAGGCTGAAGCGAGAAAGACTGGAGCGTGCA
AACCCGTTCACGGACTCGGATGGCTCGTTGGACTCCGTTGTGGCTTATGT
GGGCGATGAAGGGTGGGCGGAAACGGAGGAGGTGGAGTTCTGGGGAACTG
TACCTTCGGTGAGAAAGGAGTTTGTGCGTGAGGAGGTAGAGAGGATAGAG
GCTGCAATGAAGGCCCAGTAA
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protein sequence of Ggra3117.t1

>Ggra3117.t1 ID=Ggra3117.t1|Name=Ggra3117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MEYVNNMGMFDDVMAVLSPEVAMKVRRTAIRAGVQSAEGGTLESIRLTGT
EERQSVRSEARRTGRRVVHRLGTKVLGLIRAVPERVGRRVAACFGNLNGM
MGRGRDDRKEEEADGGVEEVSTEESVGEESVLEEVVGEVVVGEGFMGEGF
VEEGWAEAEEPWNPDTDPAVLMFEAAEAAEGWKWHPHFDHDALKRNDEKA
WEEFNEWWDEFLKPLPITKVDGTEVEAFLKREKLERERLERLKRERLERA
NPFTDSDGSLDSVVAYVGDEGWAETEEVEFWGTVPSVRKEFVREEVERIE
AAMKAQ*
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mRNA from alignment at tig00000120_pilon:198612..199532+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3117.t1 ID=Ggra3117.t1|Name=Ggra3117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000120_pilon:198612..199532+ (Gracilaria gracilis GNS1m male)
ATGGAATACGTCAACAACATGGGTATGTTTGACGATGTAATGGCTGTCTT
GAGTCCGGAAGTGGCCATGAAGGTGAGGAGGACTGCAATTAGGGCGGGGG
TCCAGAGTGCAGAAGGCGGGACGCTCGAAAGTATTCGGTTGACGGGGACC
GAAGAGCGTCAGAGCGTCCGCTCTGAAGCACGACGGACAGGGAGAAGAGT
CGTCCATCGGCTGGGGACGAAAGTGCTGGGGTTGATCAGGGCAGTGCCTG
AGCGCGTGGGGCGACGCGTGGCGGCGTGTTTTGGGAACTTGAATGGGATG
ATGGGAAGGGGTAGGGATGATCGGAAGGAGGAAGAAGCTGACGGGGGAGT
GGAGGAAGTGTCGACGGAGGAGTCGGTAGGGGAGGAGTCGGTATTGGAGG
AGGTTGTGGGGGAGGTGGTTGTTGGGGAGGGGTTTATGGGGGAGGGTTTT
GTGGAGGAGGGTTGGGCGGAGGCTGAGGAGCCGTGGAATCCGGATACGGA
CCCGGCAGTGTTGATGTTTGAGGCGGCGGAAGCGGCGGAAGGGTGGAAGT
GGCATCCGCATTTCGACCACGACGCGCTCAAACGCAACGACGAGAAGGCG
TGGGAGGAGTTCAACGAGTGGTGGGACGAGTTTCTGAAGCCACTTCCAAT
TACCAAGGTGGACGGCACGGAAGTCGAGGCTTTTCTCAAGCGAGAAAAAC
TGGAACGGGAAAGGCTAGAAAGGCTGAAGCGAGAAAGACTGGAGCGTGCA
AACCCGTTCACGGACTCGGATGGCTCGTTGGACTCCGTTGTGGCTTATGT
GGGCGATGAAGGGTGGGCGGAAACGGAGGAGGTGGAGTTCTGGGGAACTG
TACCTTCGGTGAGAAAGGAGTTTGTGCGTGAGGAGGTAGAGAGGATAGAG
GCTGCAATGAAGGCCCAGTAA
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Coding sequence (CDS) from alignment at tig00000120_pilon:198612..199532+

>Ggra3117.t1 ID=Ggra3117.t1|Name=Ggra3117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000120_pilon:198612..199532+ (Gracilaria gracilis GNS1m male)
ATGGAATACGTCAACAACATGGGTATGTTTGACGATGTAATGGCTGTCTT
GAGTCCGGAAGTGGCCATGAAGGTGAGGAGGACTGCAATTAGGGCGGGGG
TCCAGAGTGCAGAAGGCGGGACGCTCGAAAGTATTCGGTTGACGGGGACC
GAAGAGCGTCAGAGCGTCCGCTCTGAAGCACGACGGACAGGGAGAAGAGT
CGTCCATCGGCTGGGGACGAAAGTGCTGGGGTTGATCAGGGCAGTGCCTG
AGCGCGTGGGGCGACGCGTGGCGGCGTGTTTTGGGAACTTGAATGGGATG
ATGGGAAGGGGTAGGGATGATCGGAAGGAGGAAGAAGCTGACGGGGGAGT
GGAGGAAGTGTCGACGGAGGAGTCGGTAGGGGAGGAGTCGGTATTGGAGG
AGGTTGTGGGGGAGGTGGTTGTTGGGGAGGGGTTTATGGGGGAGGGTTTT
GTGGAGGAGGGTTGGGCGGAGGCTGAGGAGCCGTGGAATCCGGATACGGA
CCCGGCAGTGTTGATGTTTGAGGCGGCGGAAGCGGCGGAAGGGTGGAAGT
GGCATCCGCATTTCGACCACGACGCGCTCAAACGCAACGACGAGAAGGCG
TGGGAGGAGTTCAACGAGTGGTGGGACGAGTTTCTGAAGCCACTTCCAAT
TACCAAGGTGGACGGCACGGAAGTCGAGGCTTTTCTCAAGCGAGAAAAAC
TGGAACGGGAAAGGCTAGAAAGGCTGAAGCGAGAAAGACTGGAGCGTGCA
AACCCGTTCACGGACTCGGATGGCTCGTTGGACTCCGTTGTGGCTTATGT
GGGCGATGAAGGGTGGGCGGAAACGGAGGAGGTGGAGTTCTGGGGAACTG
TACCTTCGGTGAGAAAGGAGTTTGTGCGTGAGGAGGTAGAGAGGATAGAG
GCTGCAATGAAGGCCCAGTAA
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