Ggra3113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3113.t1
Unique NameGgra3113.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:172701..173322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog52644.XP_010584418.1
Preferred nameMND1
PFAMsMnd1
Max annot lvl33208|Metazoa
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0022402,GO:0022414,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Evalue6.23e-36
EggNOG OGsCOG5124@1|root,KOG3433@2759|Eukaryota,39R64@33154|Opisthokonta,3BEPV@33208|Metazoa,3CSR6@33213|Bilateria,481CV@7711|Chordata,492X5@7742|Vertebrata,4GS11@8782|Aves
DescriptionMeiotic nuclear
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3113Ggra3113Gracilaria gracilis GNS1m malegenetig00000120_pilon 172701..173322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1Ggra3113.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 172701..173322 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1.stop1Ggra3113.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 172701..172703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1.CDS1Ggra3113.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 172701..173089 -
Ggra3113.t1.CDS2Ggra3113.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 173175..173322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1.exon1Ggra3113.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 172701..173089 -
Ggra3113.t1.exon2Ggra3113.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 173175..173322 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1.intron1Ggra3113.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 173090..173174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3113.t1.start1Ggra3113.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 173320..173322 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3113.t1 ID=Ggra3113.t1|Name=Ggra3113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MGPRKGLSFDEKRDRLMELFTDTAEFFTLKELEKIAPKRKGNRVTVGQGT
SQKREAKLEHVKEQIELKSRERAHLTNVVEELKVGREDTEERQSALVELD
KLQKKRKEFDQRLEHFAEFDPEEMERLKERTKAARECTNRWVDNIFNCQS
WVVKKFYMDKRDFNKQFGIPEELDYVEG*
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spliced messenger RNA

>Ggra3113.t1 ID=Ggra3113.t1|Name=Ggra3113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000120_pilon:172701..173322- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCCACGGAAAGGGCTCTCATTCGACGAGAAGCGTGATCGACTGAT
GGAGCTGTTCACCGACACAGCCGAGTTTTTCACTCTAAAGGAGCTCGAGA
AGATTGCGCCCAAGAGGAAGGGGAATCGTGTCACAGTCGGTCAAGGAACG
TCACAGAAGCGAGAGGCCAAGTTGGAACATGTCAAGGAGCAGATTGAACT
GAAGAGCAGGGAGCGAGCACACCTAACGAATGTCGTAGAAGAACTCAAGG
TGGGACGTGAGGATACTGAAGAGAGACAGAGTGCTCTTGTTGAGCTTGAC
AAGTTGCAGAAGAAGCGAAAGGAGTTTGATCAAAGGCTTGAACATTTTGC
TGAGTTTGACCCGGAGGAAATGGAGCGCCTTAAGGAACGAACAAAGGCGG
CTCGGGAATGTACGAATAGGTGGGTGGATAACATTTTCAATTGTCAGTCT
TGGGTGGTGAAGAAGTTTTACATGGACAAGCGCGACTTCAACAAACAGTT
TGGCATCCCAGAGGAACTTGACTACGTTGAAGGATGA
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protein sequence of Ggra3113.t1

>Ggra3113.t1 ID=Ggra3113.t1|Name=Ggra3113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MGPRKGLSFDEKRDRLMELFTDTAEFFTLKELEKIAPKRKGNRVTVGQGT
SQKREAKLEHVKEQIELKSRERAHLTNVVEELKVGREDTEERQSALVELD
KLQKKRKEFDQRLEHFAEFDPEEMERLKERTKAARECTNRWVDNIFNCQS
WVVKKFYMDKRDFNKQFGIPEELDYVEG*
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mRNA from alignment at tig00000120_pilon:172701..173322-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3113.t1 ID=Ggra3113.t1|Name=Ggra3113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=622bp|location=Sequence derived from alignment at tig00000120_pilon:172701..173322- (Gracilaria gracilis GNS1m male)
ATGGGTCCACGGAAAGGGCTCTCATTCGACGAGAAGCGTGATCGACTGAT
GGAGCTGTTCACCGACACAGCCGAGTTTTTCACTCTAAAGGAGCTCGAGA
AGATTGCGCCCAAGAGGAAGGGGAATCGTGTCACAGTCGGTCAAGGAAGT
ACTTCAGAGTCTTGTGGACGACAACATGGTAAACACAGACAAGTGCGGTG
TTCAAACCGTGTTTTGGTGCCTGCCCAGCGAAGCGTCACAGAAGCGAGAG
GCCAAGTTGGAACATGTCAAGGAGCAGATTGAACTGAAGAGCAGGGAGCG
AGCACACCTAACGAATGTCGTAGAAGAACTCAAGGTGGGACGTGAGGATA
CTGAAGAGAGACAGAGTGCTCTTGTTGAGCTTGACAAGTTGCAGAAGAAG
CGAAAGGAGTTTGATCAAAGGCTTGAACATTTTGCTGAGTTTGACCCGGA
GGAAATGGAGCGCCTTAAGGAACGAACAAAGGCGGCTCGGGAATGTACGA
ATAGGTGGGTGGATAACATTTTCAATTGTCAGTCTTGGGTGGTGAAGAAG
TTTTACATGGACAAGCGCGACTTCAACAAACAGTTTGGCATCCCAGAGGA
ACTTGACTACGTTGAAGGATGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:172701..173322-

>Ggra3113.t1 ID=Ggra3113.t1|Name=Ggra3113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000120_pilon:172701..173322- (Gracilaria gracilis GNS1m male)
ATGGGTCCACGGAAAGGGCTCTCATTCGACGAGAAGCGTGATCGACTGAT
GGAGCTGTTCACCGACACAGCCGAGTTTTTCACTCTAAAGGAGCTCGAGA
AGATTGCGCCCAAGAGGAAGGGGAATCGTGTCACAGTCGGTCAAGGAACG
TCACAGAAGCGAGAGGCCAAGTTGGAACATGTCAAGGAGCAGATTGAACT
GAAGAGCAGGGAGCGAGCACACCTAACGAATGTCGTAGAAGAACTCAAGG
TGGGACGTGAGGATACTGAAGAGAGACAGAGTGCTCTTGTTGAGCTTGAC
AAGTTGCAGAAGAAGCGAAAGGAGTTTGATCAAAGGCTTGAACATTTTGC
TGAGTTTGACCCGGAGGAAATGGAGCGCCTTAAGGAACGAACAAAGGCGG
CTCGGGAATGTACGAATAGGTGGGTGGATAACATTTTCAATTGTCAGTCT
TGGGTGGTGAAGAAGTTTTACATGGACAAGCGCGACTTCAACAAACAGTT
TGGCATCCCAGAGGAACTTGACTACGTTGAAGGATGA
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