Ggra3111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3111.t1
Unique NameGgra3111.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:168052..168891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_84896
PFAMsPseudoU_synth_2,S4
Max annot lvl2759|Eukaryota
KEGG koko:K06182
Evalue8.07e-63
EggNOG OGsCOG1187@1|root,2S02U@2759|Eukaryota
EC5.4.99.21
DescriptionRNA pseudouridylate synthase
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3111Ggra3111Gracilaria gracilis GNS1m malegenetig00000120_pilon 168052..168891 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3111.t1.stop1Ggra3111.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 168052..168054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3111.t1.CDS1Ggra3111.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 168052..168891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3111.t1.exon1Ggra3111.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 168052..168891 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3111.t1.start1Ggra3111.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 168889..168891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3111.t1Ggra3111.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 168052..168891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3111.t1 ID=Ggra3111.t1|Name=Ggra3111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MQHSPSYTGIYGSQEAPQELKSEGIRINKCFTSFASRRQSDEFIRTNRVM
VNGKLAVPGARVLSGDLVTLDGKPVDWERLTTKKLTESFHYIKHWKRPDV
LCTTDKSFGNNIIHEVKLPGISDRVFPVGRLDESSTGLILLTSDGRLPNA
VLGGSQVCAKTYEVSTDRMLSDEDLAKLREGIVITTEYRRSGGKATKRVS
KTLPCKIARNEKDLMVTLQEGRNRQIRKMFGALGYTVTKIHRVEFMGVTL
EGLNAPGDSLFLNEEEMQLVKCALGDVAG*
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spliced messenger RNA

>Ggra3111.t1 ID=Ggra3111.t1|Name=Ggra3111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000120_pilon:168052..168891- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACATTCGCCTAGTTATACGGGTATTTATGGAAGCCAAGAAGCTCC
TCAGGAATTGAAGTCAGAAGGGATTCGGATAAACAAGTGCTTTACCAGTT
TTGCATCGAGAAGGCAGTCTGATGAGTTTATTCGAACGAATCGTGTCATG
GTGAACGGAAAGCTCGCAGTACCCGGGGCTCGAGTGTTATCAGGAGATTT
GGTCACTTTGGATGGAAAACCGGTGGATTGGGAACGTCTTACCACGAAAA
AATTGACAGAAAGTTTCCATTACATAAAGCATTGGAAGCGTCCTGACGTT
TTATGCACAACGGACAAGTCTTTTGGAAACAACATTATTCACGAGGTTAA
ACTTCCTGGGATTTCAGACAGGGTTTTTCCAGTGGGGCGTCTGGATGAAT
CTTCTACAGGTTTGATTCTTCTCACATCTGACGGTCGCCTACCAAATGCA
GTTTTGGGGGGATCACAAGTATGTGCAAAAACATATGAGGTCTCCACAGA
CCGTATGCTATCCGATGAAGATCTTGCCAAGTTGCGAGAAGGTATAGTCA
TCACTACGGAGTATAGAAGAAGTGGGGGCAAAGCTACCAAACGAGTGTCT
AAAACTTTGCCTTGCAAGATTGCAAGGAACGAAAAAGATTTAATGGTCAC
ATTACAAGAAGGGCGAAATCGGCAAATTCGGAAGATGTTTGGGGCTCTGG
GATACACAGTGACAAAGATTCACCGGGTCGAGTTCATGGGCGTAACTTTG
GAAGGTTTGAATGCACCTGGAGACTCGTTATTTCTAAATGAAGAAGAAAT
GCAACTTGTAAAATGTGCTCTGGGCGACGTAGCAGGTTGA
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protein sequence of Ggra3111.t1

>Ggra3111.t1 ID=Ggra3111.t1|Name=Ggra3111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MQHSPSYTGIYGSQEAPQELKSEGIRINKCFTSFASRRQSDEFIRTNRVM
VNGKLAVPGARVLSGDLVTLDGKPVDWERLTTKKLTESFHYIKHWKRPDV
LCTTDKSFGNNIIHEVKLPGISDRVFPVGRLDESSTGLILLTSDGRLPNA
VLGGSQVCAKTYEVSTDRMLSDEDLAKLREGIVITTEYRRSGGKATKRVS
KTLPCKIARNEKDLMVTLQEGRNRQIRKMFGALGYTVTKIHRVEFMGVTL
EGLNAPGDSLFLNEEEMQLVKCALGDVAG*
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mRNA from alignment at tig00000120_pilon:168052..168891-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3111.t1 ID=Ggra3111.t1|Name=Ggra3111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000120_pilon:168052..168891- (Gracilaria gracilis GNS1m male)
ATGCAACATTCGCCTAGTTATACGGGTATTTATGGAAGCCAAGAAGCTCC
TCAGGAATTGAAGTCAGAAGGGATTCGGATAAACAAGTGCTTTACCAGTT
TTGCATCGAGAAGGCAGTCTGATGAGTTTATTCGAACGAATCGTGTCATG
GTGAACGGAAAGCTCGCAGTACCCGGGGCTCGAGTGTTATCAGGAGATTT
GGTCACTTTGGATGGAAAACCGGTGGATTGGGAACGTCTTACCACGAAAA
AATTGACAGAAAGTTTCCATTACATAAAGCATTGGAAGCGTCCTGACGTT
TTATGCACAACGGACAAGTCTTTTGGAAACAACATTATTCACGAGGTTAA
ACTTCCTGGGATTTCAGACAGGGTTTTTCCAGTGGGGCGTCTGGATGAAT
CTTCTACAGGTTTGATTCTTCTCACATCTGACGGTCGCCTACCAAATGCA
GTTTTGGGGGGATCACAAGTATGTGCAAAAACATATGAGGTCTCCACAGA
CCGTATGCTATCCGATGAAGATCTTGCCAAGTTGCGAGAAGGTATAGTCA
TCACTACGGAGTATAGAAGAAGTGGGGGCAAAGCTACCAAACGAGTGTCT
AAAACTTTGCCTTGCAAGATTGCAAGGAACGAAAAAGATTTAATGGTCAC
ATTACAAGAAGGGCGAAATCGGCAAATTCGGAAGATGTTTGGGGCTCTGG
GATACACAGTGACAAAGATTCACCGGGTCGAGTTCATGGGCGTAACTTTG
GAAGGTTTGAATGCACCTGGAGACTCGTTATTTCTAAATGAAGAAGAAAT
GCAACTTGTAAAATGTGCTCTGGGCGACGTAGCAGGTTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:168052..168891-

>Ggra3111.t1 ID=Ggra3111.t1|Name=Ggra3111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000120_pilon:168052..168891- (Gracilaria gracilis GNS1m male)
ATGCAACATTCGCCTAGTTATACGGGTATTTATGGAAGCCAAGAAGCTCC
TCAGGAATTGAAGTCAGAAGGGATTCGGATAAACAAGTGCTTTACCAGTT
TTGCATCGAGAAGGCAGTCTGATGAGTTTATTCGAACGAATCGTGTCATG
GTGAACGGAAAGCTCGCAGTACCCGGGGCTCGAGTGTTATCAGGAGATTT
GGTCACTTTGGATGGAAAACCGGTGGATTGGGAACGTCTTACCACGAAAA
AATTGACAGAAAGTTTCCATTACATAAAGCATTGGAAGCGTCCTGACGTT
TTATGCACAACGGACAAGTCTTTTGGAAACAACATTATTCACGAGGTTAA
ACTTCCTGGGATTTCAGACAGGGTTTTTCCAGTGGGGCGTCTGGATGAAT
CTTCTACAGGTTTGATTCTTCTCACATCTGACGGTCGCCTACCAAATGCA
GTTTTGGGGGGATCACAAGTATGTGCAAAAACATATGAGGTCTCCACAGA
CCGTATGCTATCCGATGAAGATCTTGCCAAGTTGCGAGAAGGTATAGTCA
TCACTACGGAGTATAGAAGAAGTGGGGGCAAAGCTACCAAACGAGTGTCT
AAAACTTTGCCTTGCAAGATTGCAAGGAACGAAAAAGATTTAATGGTCAC
ATTACAAGAAGGGCGAAATCGGCAAATTCGGAAGATGTTTGGGGCTCTGG
GATACACAGTGACAAAGATTCACCGGGTCGAGTTCATGGGCGTAACTTTG
GAAGGTTTGAATGCACCTGGAGACTCGTTATTTCTAAATGAAGAAGAAAT
GCAACTTGTAAAATGTGCTCTGGGCGACGTAGCAGGTTGA
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