Ggra3110.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3110.t1
Unique NameGgra3110.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:166583..167269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002955566.1
PFAMsMethyltransf_11
Max annot lvl3041|Chlorophyta
KEGG koko:K17803
Evalue7.6e-44
EggNOG OGsCOG0500@1|root,KOG4300@2759|Eukaryota,37NZW@33090|Viridiplantae,34KY2@3041|Chlorophyta
DescriptionubiE/COQ5 methyltransferase family
COG categoryQ
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3110Ggra3110Gracilaria gracilis GNS1m malegenetig00000120_pilon 166583..167269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3110.t1.stop1Ggra3110.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 166583..166585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3110.t1.CDS1Ggra3110.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 166583..167269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3110.t1.exon1Ggra3110.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 166583..167269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3110.t1.start1Ggra3110.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 167267..167269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3110.t1Ggra3110.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 166583..167269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3110.t1 ID=Ggra3110.t1|Name=Ggra3110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=229bp
MTCSLTRRQVVYGLLSLPSSVLAYSEQPDYDDFAETYDELDGSNYLTNLL
GFTDLRSELLSRAAGRVLETGIGTGVNIPYYDPKKVKSLTGIDSSSAMLA
KAQQRSKHFDIPISLLTASADTIEFPDSSFDTVVDTFCLCVYENPTEVLE
EMRRLVKPGGRVLLLEHSVSTNRLVAAYQDLVAKPNAALSKGCYSNQRVM
EMAVYAGFKPIRIRTVLEGTIISLELDT*
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spliced messenger RNA

>Ggra3110.t1 ID=Ggra3110.t1|Name=Ggra3110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000120_pilon:166583..167269- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGTTCTCTGACCCGACGTCAGGTTGTGTATGGGCTATTGTCTCT
TCCGAGCTCTGTTTTAGCATATTCTGAGCAACCTGACTACGATGACTTTG
CGGAGACCTACGACGAACTCGACGGATCTAACTATTTAACAAACCTTTTA
GGGTTCACAGATTTGCGTTCTGAACTTCTCTCCCGCGCTGCAGGTCGCGT
GTTGGAGACTGGCATTGGCACGGGCGTTAACATTCCTTATTATGACCCAA
AGAAGGTTAAGTCTCTCACTGGAATAGACTCCAGTTCTGCAATGCTAGCA
AAAGCGCAGCAAAGGTCAAAGCATTTCGACATTCCAATATCTCTGTTGAC
AGCATCAGCGGATACGATTGAATTCCCAGATTCCTCCTTCGATACAGTTG
TGGATACATTTTGTTTATGTGTTTATGAAAACCCAACGGAAGTGTTAGAA
GAAATGCGTAGACTCGTGAAACCTGGTGGCCGAGTTCTTCTCCTAGAACA
CTCGGTCAGCACAAATCGCCTCGTAGCAGCATACCAGGATCTTGTGGCAA
AGCCTAACGCAGCGCTGTCCAAAGGTTGTTATTCCAACCAAAGGGTAATG
GAGATGGCTGTTTACGCAGGCTTCAAACCGATTAGAATAAGAACGGTTCT
TGAGGGAACGATTATCAGTCTCGAGCTGGACACATGA
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protein sequence of Ggra3110.t1

>Ggra3110.t1 ID=Ggra3110.t1|Name=Ggra3110.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=229bp
MTCSLTRRQVVYGLLSLPSSVLAYSEQPDYDDFAETYDELDGSNYLTNLL
GFTDLRSELLSRAAGRVLETGIGTGVNIPYYDPKKVKSLTGIDSSSAMLA
KAQQRSKHFDIPISLLTASADTIEFPDSSFDTVVDTFCLCVYENPTEVLE
EMRRLVKPGGRVLLLEHSVSTNRLVAAYQDLVAKPNAALSKGCYSNQRVM
EMAVYAGFKPIRIRTVLEGTIISLELDT*
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mRNA from alignment at tig00000120_pilon:166583..167269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3110.t1 ID=Ggra3110.t1|Name=Ggra3110.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000120_pilon:166583..167269- (Gracilaria gracilis GNS1m male)
ATGACGTGTTCTCTGACCCGACGTCAGGTTGTGTATGGGCTATTGTCTCT
TCCGAGCTCTGTTTTAGCATATTCTGAGCAACCTGACTACGATGACTTTG
CGGAGACCTACGACGAACTCGACGGATCTAACTATTTAACAAACCTTTTA
GGGTTCACAGATTTGCGTTCTGAACTTCTCTCCCGCGCTGCAGGTCGCGT
GTTGGAGACTGGCATTGGCACGGGCGTTAACATTCCTTATTATGACCCAA
AGAAGGTTAAGTCTCTCACTGGAATAGACTCCAGTTCTGCAATGCTAGCA
AAAGCGCAGCAAAGGTCAAAGCATTTCGACATTCCAATATCTCTGTTGAC
AGCATCAGCGGATACGATTGAATTCCCAGATTCCTCCTTCGATACAGTTG
TGGATACATTTTGTTTATGTGTTTATGAAAACCCAACGGAAGTGTTAGAA
GAAATGCGTAGACTCGTGAAACCTGGTGGCCGAGTTCTTCTCCTAGAACA
CTCGGTCAGCACAAATCGCCTCGTAGCAGCATACCAGGATCTTGTGGCAA
AGCCTAACGCAGCGCTGTCCAAAGGTTGTTATTCCAACCAAAGGGTAATG
GAGATGGCTGTTTACGCAGGCTTCAAACCGATTAGAATAAGAACGGTTCT
TGAGGGAACGATTATCAGTCTCGAGCTGGACACATGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:166583..167269-

>Ggra3110.t1 ID=Ggra3110.t1|Name=Ggra3110.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000120_pilon:166583..167269- (Gracilaria gracilis GNS1m male)
ATGACGTGTTCTCTGACCCGACGTCAGGTTGTGTATGGGCTATTGTCTCT
TCCGAGCTCTGTTTTAGCATATTCTGAGCAACCTGACTACGATGACTTTG
CGGAGACCTACGACGAACTCGACGGATCTAACTATTTAACAAACCTTTTA
GGGTTCACAGATTTGCGTTCTGAACTTCTCTCCCGCGCTGCAGGTCGCGT
GTTGGAGACTGGCATTGGCACGGGCGTTAACATTCCTTATTATGACCCAA
AGAAGGTTAAGTCTCTCACTGGAATAGACTCCAGTTCTGCAATGCTAGCA
AAAGCGCAGCAAAGGTCAAAGCATTTCGACATTCCAATATCTCTGTTGAC
AGCATCAGCGGATACGATTGAATTCCCAGATTCCTCCTTCGATACAGTTG
TGGATACATTTTGTTTATGTGTTTATGAAAACCCAACGGAAGTGTTAGAA
GAAATGCGTAGACTCGTGAAACCTGGTGGCCGAGTTCTTCTCCTAGAACA
CTCGGTCAGCACAAATCGCCTCGTAGCAGCATACCAGGATCTTGTGGCAA
AGCCTAACGCAGCGCTGTCCAAAGGTTGTTATTCCAACCAAAGGGTAATG
GAGATGGCTGTTTACGCAGGCTTCAAACCGATTAGAATAAGAACGGTTCT
TGAGGGAACGATTATCAGTCTCGAGCTGGACACATGA
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