Ggra3107.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3107.t1
Unique NameGgra3107.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length771
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:152474..154959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703819.1
PFAMsGlyco_transf_90
Max annot lvl2759|Eukaryota
Evalue2.75e-96
EggNOG OGsKOG2458@1|root,KOG2458@2759|Eukaryota
Descriptionglucosyltransferase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3107Ggra3107Gracilaria gracilis GNS1m malegenetig00000120_pilon 152474..154959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1Ggra3107.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 152474..154959 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1.stop1Ggra3107.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 152474..152476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1.CDS1Ggra3107.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 152474..153411 -
Ggra3107.t1.CDS2Ggra3107.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 153492..154683 -
Ggra3107.t1.CDS3Ggra3107.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 154777..154959 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1.exon1Ggra3107.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 152474..153411 -
Ggra3107.t1.exon2Ggra3107.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 153492..154683 -
Ggra3107.t1.exon3Ggra3107.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 154777..154959 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1.intron1Ggra3107.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 153412..153491 -
Ggra3107.t1.intron2Ggra3107.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 154684..154776 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3107.t1.start1Ggra3107.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 154957..154959 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3107.t1 ID=Ggra3107.t1|Name=Ggra3107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp
MRHKASSKSSRYVSQKKSSSHRAKKGSKPGNVSNYFHDSFLSIWRQYVRT
AITFVIHNWGYILFSLFIVAYISTFWDVAASRSKPQPQEKVIETMRMAIP
TNPHLPNQENVTVQIQLPGAISSEGKKFENLEGGVEEKRSSNLLPGAIGL
TGSFDEHGDNHEGDNNNGATESAKTAEQAGKNGTDSSSKTGQADSPPPDS
SVQDTSSKKKGKSGSKRGTKKGKKKGKKKKGKKKKKKNISGGSSGTTESG
ASTAATAGASGGNGKETDPSKSEKASEGSESSGSSPDNDSKNKISENKSN
SESASYDGKQPQKSNDAASQNEKEPGTSSKEGKEQSSSDSEGHKKITKGK
KKKKRGKKGKKKKPDAAQEPFTVNSTFTGPHPMNRNMEELQVPGDIGILD
DSKVRSYYEKLVKAYLAPFGDGIDRRSFFEILRRKTYSLSPPGSNKGIQT
ILFQLIEKKLYLMDPYEMTKNSKPFYKTRIQELVGLLSDIAKGGNVPDTE
FVVAIHDCVQTVNAEHTYRGSVYQESSPTFTIVSCNFSDNIPFPMWEGDP
VRGGLKSWDAKMEKYKSSDTTPWAEKQSKAVFRGGNRPSMFYKTKEEANE
HSQDSGRSRLHFLSNQNPDLFDVGVSGRWAGEMHQMKILSEADHHRFKYI
LYAEGNCFWADRLNKQIFGPSAIIKQETPCGQFWEPLLKPFTHYIPTDFF
FQDTTEKIKWAQEHDSNAQVIVKNSNDFAANFLTEKAIKMYVEVLLIEYS
KLLNTKKITQEQGSQDVTAR*
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spliced messenger RNA

>Ggra3107.t1 ID=Ggra3107.t1|Name=Ggra3107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2313bp|location=Sequence derived from alignment at tig00000120_pilon:152474..154959- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCATAAGGCTTCGTCGAAAAGTTCAAGATATGTATCTCAGAAGAA
AAGCTCGTCTCACAGAGCCAAGAAAGGGTCCAAGCCTGGTAATGTATCAA
ATTACTTCCACGATTCCTTTCTTTCCATATGGAGACAATACGTTCGAACG
GCGATAACTTTCGTGATCCACAACTGGGGATATATATTGTTCAGCTTATT
CATCGTTGCGTACATTTCAACTTTCTGGGACGTAGCTGCATCCAGATCGA
AGCCCCAACCACAGGAAAAAGTGATTGAAACGATGCGTATGGCCATCCCA
ACTAATCCTCACCTTCCAAATCAAGAAAACGTAACTGTTCAAATTCAGTT
GCCTGGGGCTATATCAAGCGAAGGGAAGAAATTTGAGAATCTTGAAGGAG
GTGTGGAAGAGAAGAGAAGCTCAAATCTCCTTCCTGGGGCTATCGGTCTC
ACTGGATCTTTCGACGAACACGGAGATAATCATGAGGGTGATAACAATAA
CGGAGCAACAGAATCAGCAAAGACAGCTGAGCAAGCTGGAAAGAATGGAA
CAGATTCATCATCTAAGACAGGACAAGCGGACTCTCCACCTCCCGATTCA
AGTGTTCAGGATACGTCCTCGAAAAAGAAGGGAAAGAGTGGAAGCAAAAG
AGGAACGAAGAAAGGGAAAAAGAAAGGGAAGAAGAAGAAAGGAAAGAAGA
AGAAGAAGAAGAACATAAGCGGCGGTTCTTCAGGGACCACAGAGTCCGGG
GCTTCAACCGCGGCAACTGCGGGTGCCTCAGGGGGTAATGGGAAAGAAAC
AGACCCCTCAAAATCTGAAAAAGCTTCCGAAGGTTCTGAATCTTCCGGTT
CATCTCCCGACAACGACAGCAAAAATAAGATTTCCGAGAACAAAAGTAAC
TCCGAGTCAGCATCATATGACGGAAAACAACCACAGAAATCGAACGATGC
CGCTTCCCAAAATGAAAAAGAGCCTGGGACCTCATCGAAAGAGGGCAAAG
AACAGTCTTCAAGTGATAGTGAGGGACACAAGAAAATCACGAAAGGCAAG
AAGAAAAAGAAGAGAGGAAAGAAGGGAAAGAAGAAGAAGCCTGACGCAGC
GCAGGAGCCGTTCACAGTGAATAGCACGTTCACCGGACCCCATCCGATGA
ATAGAAATATGGAAGAACTACAGGTTCCAGGAGACATTGGAATACTGGAT
GACTCCAAGGTTCGTTCCTACTATGAAAAACTTGTGAAGGCATATCTTGC
TCCGTTCGGAGATGGGATTGATAGACGTTCCTTTTTTGAGATTTTGAGAC
GGAAGACATACTCACTAAGCCCACCAGGGTCCAATAAGGGAATTCAGACC
ATTCTCTTTCAGCTTATAGAAAAAAAACTGTATCTTATGGATCCGTATGA
GATGACAAAGAATTCGAAACCCTTCTACAAGACCCGTATCCAGGAGTTAG
TGGGATTGTTAAGTGATATTGCCAAGGGAGGGAACGTTCCAGACACAGAG
TTTGTTGTAGCTATTCACGATTGCGTTCAGACGGTTAATGCCGAACATAC
TTATAGGGGTTCTGTATACCAGGAAAGCAGTCCAACGTTCACCATTGTCT
CATGTAACTTTTCAGACAACATACCGTTTCCAATGTGGGAAGGTGACCCC
GTCCGAGGAGGATTGAAAAGTTGGGATGCCAAAATGGAGAAATACAAGTC
CTCTGACACTACTCCATGGGCAGAAAAACAGTCGAAGGCTGTATTTCGTG
GTGGAAATCGCCCAAGCATGTTCTATAAGACGAAAGAGGAAGCTAACGAA
CATTCACAAGATTCTGGAAGAAGCCGGCTTCACTTTTTATCGAATCAGAA
CCCAGATTTATTCGACGTTGGGGTCAGCGGGCGATGGGCTGGCGAAATGC
ATCAGATGAAGATTCTTAGTGAAGCTGATCACCATCGATTCAAGTACATC
TTGTACGCCGAAGGGAACTGCTTCTGGGCTGATCGGCTGAACAAACAAAT
ATTCGGTCCTTCAGCGATAATCAAGCAAGAAACACCTTGTGGCCAATTCT
GGGAACCACTTCTCAAACCATTCACTCATTACATTCCAACTGATTTCTTC
TTTCAGGATACAACCGAGAAGATTAAATGGGCTCAAGAACATGATTCTAA
CGCACAGGTTATCGTCAAAAATTCCAACGACTTTGCTGCAAACTTTCTCA
CTGAGAAGGCAATCAAAATGTACGTTGAGGTTCTTCTTATTGAGTATTCC
AAGCTCTTGAATACAAAGAAGATAACACAAGAGCAAGGGAGTCAAGATGT
GACTGCAAGATAG
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protein sequence of Ggra3107.t1

>Ggra3107.t1 ID=Ggra3107.t1|Name=Ggra3107.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=771bp
MRHKASSKSSRYVSQKKSSSHRAKKGSKPGNVSNYFHDSFLSIWRQYVRT
AITFVIHNWGYILFSLFIVAYISTFWDVAASRSKPQPQEKVIETMRMAIP
TNPHLPNQENVTVQIQLPGAISSEGKKFENLEGGVEEKRSSNLLPGAIGL
TGSFDEHGDNHEGDNNNGATESAKTAEQAGKNGTDSSSKTGQADSPPPDS
SVQDTSSKKKGKSGSKRGTKKGKKKGKKKKGKKKKKKNISGGSSGTTESG
ASTAATAGASGGNGKETDPSKSEKASEGSESSGSSPDNDSKNKISENKSN
SESASYDGKQPQKSNDAASQNEKEPGTSSKEGKEQSSSDSEGHKKITKGK
KKKKRGKKGKKKKPDAAQEPFTVNSTFTGPHPMNRNMEELQVPGDIGILD
DSKVRSYYEKLVKAYLAPFGDGIDRRSFFEILRRKTYSLSPPGSNKGIQT
ILFQLIEKKLYLMDPYEMTKNSKPFYKTRIQELVGLLSDIAKGGNVPDTE
FVVAIHDCVQTVNAEHTYRGSVYQESSPTFTIVSCNFSDNIPFPMWEGDP
VRGGLKSWDAKMEKYKSSDTTPWAEKQSKAVFRGGNRPSMFYKTKEEANE
HSQDSGRSRLHFLSNQNPDLFDVGVSGRWAGEMHQMKILSEADHHRFKYI
LYAEGNCFWADRLNKQIFGPSAIIKQETPCGQFWEPLLKPFTHYIPTDFF
FQDTTEKIKWAQEHDSNAQVIVKNSNDFAANFLTEKAIKMYVEVLLIEYS
KLLNTKKITQEQGSQDVTAR*
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mRNA from alignment at tig00000120_pilon:152474..154959-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3107.t1 ID=Ggra3107.t1|Name=Ggra3107.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2486bp|location=Sequence derived from alignment at tig00000120_pilon:152474..154959- (Gracilaria gracilis GNS1m male)
ATGCGTCATAAGGCTTCGTCGAAAAGTTCAAGATATGTATCTCAGAAGAA
AAGCTCGTCTCACAGAGCCAAGAAAGGGTCCAAGCCTGGTAATGTATCAA
ATTACTTCCACGATTCCTTTCTTTCCATATGGAGACAATACGTTCGAACG
GCGATAACTTTCGTGATCCACAACTGGGGATATGTAAGTGTCTCTAGATT
AGCTTTTCAACTTCGACGCTGATTTACCAGTGACTAACATTTGAATACGC
TTCATGTCAATGACACTGCGAAACAGATATTGTTCAGCTTATTCATCGTT
GCGTACATTTCAACTTTCTGGGACGTAGCTGCATCCAGATCGAAGCCCCA
ACCACAGGAAAAAGTGATTGAAACGATGCGTATGGCCATCCCAACTAATC
CTCACCTTCCAAATCAAGAAAACGTAACTGTTCAAATTCAGTTGCCTGGG
GCTATATCAAGCGAAGGGAAGAAATTTGAGAATCTTGAAGGAGGTGTGGA
AGAGAAGAGAAGCTCAAATCTCCTTCCTGGGGCTATCGGTCTCACTGGAT
CTTTCGACGAACACGGAGATAATCATGAGGGTGATAACAATAACGGAGCA
ACAGAATCAGCAAAGACAGCTGAGCAAGCTGGAAAGAATGGAACAGATTC
ATCATCTAAGACAGGACAAGCGGACTCTCCACCTCCCGATTCAAGTGTTC
AGGATACGTCCTCGAAAAAGAAGGGAAAGAGTGGAAGCAAAAGAGGAACG
AAGAAAGGGAAAAAGAAAGGGAAGAAGAAGAAAGGAAAGAAGAAGAAGAA
GAAGAACATAAGCGGCGGTTCTTCAGGGACCACAGAGTCCGGGGCTTCAA
CCGCGGCAACTGCGGGTGCCTCAGGGGGTAATGGGAAAGAAACAGACCCC
TCAAAATCTGAAAAAGCTTCCGAAGGTTCTGAATCTTCCGGTTCATCTCC
CGACAACGACAGCAAAAATAAGATTTCCGAGAACAAAAGTAACTCCGAGT
CAGCATCATATGACGGAAAACAACCACAGAAATCGAACGATGCCGCTTCC
CAAAATGAAAAAGAGCCTGGGACCTCATCGAAAGAGGGCAAAGAACAGTC
TTCAAGTGATAGTGAGGGACACAAGAAAATCACGAAAGGCAAGAAGAAAA
AGAAGAGAGGAAAGAAGGGAAAGAAGAAGAAGCCTGACGCAGCGCAGGAG
CCGTTCACAGTGAATAGCACGTTCACCGGACCCCATCCGATGAATAGAAA
TATGGAAGAACTACAGGTTCCAGGAGACATTGGAATACTGGATGACTCCA
AGGTTCGTTCCTACTATGAAAAACTTGTGAAGGCATATCTTGCTCCGTTC
GGAGATGGGATTGATAGACGTTCCTTTTTTGAGATTTTGAGACGGAAGAC
ATACTCACTAAGCCCACCAGGGTCCAATAAGGGAATTCAGACCATTCTCT
TTCAGCTTATAGAAAAAAGTAAGTACAAATACTCGGAACTCCTTGAAACA
AGGTCGGCCTCTTGGAACTGTTTTCTAACAAAACTTTTTGTGCACCAGAA
CTGTATCTTATGGATCCGTATGAGATGACAAAGAATTCGAAACCCTTCTA
CAAGACCCGTATCCAGGAGTTAGTGGGATTGTTAAGTGATATTGCCAAGG
GAGGGAACGTTCCAGACACAGAGTTTGTTGTAGCTATTCACGATTGCGTT
CAGACGGTTAATGCCGAACATACTTATAGGGGTTCTGTATACCAGGAAAG
CAGTCCAACGTTCACCATTGTCTCATGTAACTTTTCAGACAACATACCGT
TTCCAATGTGGGAAGGTGACCCCGTCCGAGGAGGATTGAAAAGTTGGGAT
GCCAAAATGGAGAAATACAAGTCCTCTGACACTACTCCATGGGCAGAAAA
ACAGTCGAAGGCTGTATTTCGTGGTGGAAATCGCCCAAGCATGTTCTATA
AGACGAAAGAGGAAGCTAACGAACATTCACAAGATTCTGGAAGAAGCCGG
CTTCACTTTTTATCGAATCAGAACCCAGATTTATTCGACGTTGGGGTCAG
CGGGCGATGGGCTGGCGAAATGCATCAGATGAAGATTCTTAGTGAAGCTG
ATCACCATCGATTCAAGTACATCTTGTACGCCGAAGGGAACTGCTTCTGG
GCTGATCGGCTGAACAAACAAATATTCGGTCCTTCAGCGATAATCAAGCA
AGAAACACCTTGTGGCCAATTCTGGGAACCACTTCTCAAACCATTCACTC
ATTACATTCCAACTGATTTCTTCTTTCAGGATACAACCGAGAAGATTAAA
TGGGCTCAAGAACATGATTCTAACGCACAGGTTATCGTCAAAAATTCCAA
CGACTTTGCTGCAAACTTTCTCACTGAGAAGGCAATCAAAATGTACGTTG
AGGTTCTTCTTATTGAGTATTCCAAGCTCTTGAATACAAAGAAGATAACA
CAAGAGCAAGGGAGTCAAGATGTGACTGCAAGATAG
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Coding sequence (CDS) from alignment at tig00000120_pilon:152474..154959-

>Ggra3107.t1 ID=Ggra3107.t1|Name=Ggra3107.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2313bp|location=Sequence derived from alignment at tig00000120_pilon:152474..154959- (Gracilaria gracilis GNS1m male)
ATGCGTCATAAGGCTTCGTCGAAAAGTTCAAGATATGTATCTCAGAAGAA
AAGCTCGTCTCACAGAGCCAAGAAAGGGTCCAAGCCTGGTAATGTATCAA
ATTACTTCCACGATTCCTTTCTTTCCATATGGAGACAATACGTTCGAACG
GCGATAACTTTCGTGATCCACAACTGGGGATATATATTGTTCAGCTTATT
CATCGTTGCGTACATTTCAACTTTCTGGGACGTAGCTGCATCCAGATCGA
AGCCCCAACCACAGGAAAAAGTGATTGAAACGATGCGTATGGCCATCCCA
ACTAATCCTCACCTTCCAAATCAAGAAAACGTAACTGTTCAAATTCAGTT
GCCTGGGGCTATATCAAGCGAAGGGAAGAAATTTGAGAATCTTGAAGGAG
GTGTGGAAGAGAAGAGAAGCTCAAATCTCCTTCCTGGGGCTATCGGTCTC
ACTGGATCTTTCGACGAACACGGAGATAATCATGAGGGTGATAACAATAA
CGGAGCAACAGAATCAGCAAAGACAGCTGAGCAAGCTGGAAAGAATGGAA
CAGATTCATCATCTAAGACAGGACAAGCGGACTCTCCACCTCCCGATTCA
AGTGTTCAGGATACGTCCTCGAAAAAGAAGGGAAAGAGTGGAAGCAAAAG
AGGAACGAAGAAAGGGAAAAAGAAAGGGAAGAAGAAGAAAGGAAAGAAGA
AGAAGAAGAAGAACATAAGCGGCGGTTCTTCAGGGACCACAGAGTCCGGG
GCTTCAACCGCGGCAACTGCGGGTGCCTCAGGGGGTAATGGGAAAGAAAC
AGACCCCTCAAAATCTGAAAAAGCTTCCGAAGGTTCTGAATCTTCCGGTT
CATCTCCCGACAACGACAGCAAAAATAAGATTTCCGAGAACAAAAGTAAC
TCCGAGTCAGCATCATATGACGGAAAACAACCACAGAAATCGAACGATGC
CGCTTCCCAAAATGAAAAAGAGCCTGGGACCTCATCGAAAGAGGGCAAAG
AACAGTCTTCAAGTGATAGTGAGGGACACAAGAAAATCACGAAAGGCAAG
AAGAAAAAGAAGAGAGGAAAGAAGGGAAAGAAGAAGAAGCCTGACGCAGC
GCAGGAGCCGTTCACAGTGAATAGCACGTTCACCGGACCCCATCCGATGA
ATAGAAATATGGAAGAACTACAGGTTCCAGGAGACATTGGAATACTGGAT
GACTCCAAGGTTCGTTCCTACTATGAAAAACTTGTGAAGGCATATCTTGC
TCCGTTCGGAGATGGGATTGATAGACGTTCCTTTTTTGAGATTTTGAGAC
GGAAGACATACTCACTAAGCCCACCAGGGTCCAATAAGGGAATTCAGACC
ATTCTCTTTCAGCTTATAGAAAAAAAACTGTATCTTATGGATCCGTATGA
GATGACAAAGAATTCGAAACCCTTCTACAAGACCCGTATCCAGGAGTTAG
TGGGATTGTTAAGTGATATTGCCAAGGGAGGGAACGTTCCAGACACAGAG
TTTGTTGTAGCTATTCACGATTGCGTTCAGACGGTTAATGCCGAACATAC
TTATAGGGGTTCTGTATACCAGGAAAGCAGTCCAACGTTCACCATTGTCT
CATGTAACTTTTCAGACAACATACCGTTTCCAATGTGGGAAGGTGACCCC
GTCCGAGGAGGATTGAAAAGTTGGGATGCCAAAATGGAGAAATACAAGTC
CTCTGACACTACTCCATGGGCAGAAAAACAGTCGAAGGCTGTATTTCGTG
GTGGAAATCGCCCAAGCATGTTCTATAAGACGAAAGAGGAAGCTAACGAA
CATTCACAAGATTCTGGAAGAAGCCGGCTTCACTTTTTATCGAATCAGAA
CCCAGATTTATTCGACGTTGGGGTCAGCGGGCGATGGGCTGGCGAAATGC
ATCAGATGAAGATTCTTAGTGAAGCTGATCACCATCGATTCAAGTACATC
TTGTACGCCGAAGGGAACTGCTTCTGGGCTGATCGGCTGAACAAACAAAT
ATTCGGTCCTTCAGCGATAATCAAGCAAGAAACACCTTGTGGCCAATTCT
GGGAACCACTTCTCAAACCATTCACTCATTACATTCCAACTGATTTCTTC
TTTCAGGATACAACCGAGAAGATTAAATGGGCTCAAGAACATGATTCTAA
CGCACAGGTTATCGTCAAAAATTCCAACGACTTTGCTGCAAACTTTCTCA
CTGAGAAGGCAATCAAAATGTACGTTGAGGTTCTTCTTATTGAGTATTCC
AAGCTCTTGAATACAAAGAAGATAACACAAGAGCAAGGGAGTCAAGATGT
GACTGCAAGATAG
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