Ggra3106.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3106.t1
Unique NameGgra3106.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:150587..151111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr9P05320_001
PFAMsCyt-b5
Max annot lvl35493|Streptophyta
Evalue2.78e-31
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,37WIJ@33090|Viridiplantae,3GJQ6@35493|Streptophyta,3M0MG@4447|Liliopsida
DescriptionBelongs to the cytochrome b5 family
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3106Ggra3106Gracilaria gracilis GNS1m malegenetig00000120_pilon 150587..151111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1Ggra3106.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 150587..151111 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1.stop1Ggra3106.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 150587..150589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1.CDS1Ggra3106.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 150587..150649 -
Ggra3106.t1.CDS2Ggra3106.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 150797..151111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1.exon1Ggra3106.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 150587..150649 -
Ggra3106.t1.exon2Ggra3106.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 150797..151111 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1.intron1Ggra3106.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 150650..150796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3106.t1.start1Ggra3106.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 151109..151111 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3106.t1 ID=Ggra3106.t1|Name=Ggra3106.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MGLVLCIGAYVLIRRYRHGGLAGGTAMLAAPQTSSSIGSGRVFTEEEVAS
HNSQEDLWLIIKEKVYDFTDYIALHPGGEAMLRNAGQDSTKGFSGSQHPA
RVWDMIDEFYIGDLALPETSDKKED*
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spliced messenger RNA

>Ggra3106.t1 ID=Ggra3106.t1|Name=Ggra3106.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000120_pilon:150587..151111- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTTGTCCTATGTATTGGTGCATATGTTCTTATCCGCCGGTATCG
ACACGGGGGTCTTGCAGGTGGAACCGCTATGCTGGCTGCCCCGCAGACCT
CATCGAGTATTGGATCTGGTCGAGTTTTCACCGAGGAAGAGGTTGCGAGT
CACAACTCGCAGGAAGATCTTTGGCTTATCATAAAAGAAAAAGTTTACGA
CTTCACTGACTACATTGCGCTACATCCTGGAGGTGAAGCCATGCTTCGAA
ACGCTGGACAAGACTCCACAAAAGGGTTCTCTGGGTCGCAACATCCAGCT
CGAGTTTGGGATATGATCGATGAATTCTACATCGGGGATCTCGCTCTACC
CGAAACATCCGACAAGAAAGAGGACTAA
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protein sequence of Ggra3106.t1

>Ggra3106.t1 ID=Ggra3106.t1|Name=Ggra3106.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MGLVLCIGAYVLIRRYRHGGLAGGTAMLAAPQTSSSIGSGRVFTEEEVAS
HNSQEDLWLIIKEKVYDFTDYIALHPGGEAMLRNAGQDSTKGFSGSQHPA
RVWDMIDEFYIGDLALPETSDKKED*
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mRNA from alignment at tig00000120_pilon:150587..151111-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3106.t1 ID=Ggra3106.t1|Name=Ggra3106.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000120_pilon:150587..151111- (Gracilaria gracilis GNS1m male)
ATGGGACTTGTCCTATGTATTGGTGCATATGTTCTTATCCGCCGGTATCG
ACACGGGGGTCTTGCAGGTGGAACCGCTATGCTGGCTGCCCCGCAGACCT
CATCGAGTATTGGATCTGGTCGAGTTTTCACCGAGGAAGAGGTTGCGAGT
CACAACTCGCAGGAAGATCTTTGGCTTATCATAAAAGAAAAAGTTTACGA
CTTCACTGACTACATTGCGCTACATCCTGGAGGTGAAGCCATGCTTCGAA
ACGCTGGACAAGACTCCACAAAAGGGTTCTCTGGGTCGCAACATCCAGCT
CGAGTTTGGGATATGGTAAGTTAATGCTCTTTTTCCGAAAAGCCGTAGAT
GGGAATTGTGTTGCACTTGGCCACTAGCTTTGTGAGATGTATGTTCTCCA
AATTGGAGCCTCTGTGGAGCAAGATTTGAACGATGATTCTAACCATTATT
CGTTTTATGAAGATCGATGAATTCTACATCGGGGATCTCGCTCTACCCGA
AACATCCGACAAGAAAGAGGACTAA
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Coding sequence (CDS) from alignment at tig00000120_pilon:150587..151111-

>Ggra3106.t1 ID=Ggra3106.t1|Name=Ggra3106.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000120_pilon:150587..151111- (Gracilaria gracilis GNS1m male)
ATGGGACTTGTCCTATGTATTGGTGCATATGTTCTTATCCGCCGGTATCG
ACACGGGGGTCTTGCAGGTGGAACCGCTATGCTGGCTGCCCCGCAGACCT
CATCGAGTATTGGATCTGGTCGAGTTTTCACCGAGGAAGAGGTTGCGAGT
CACAACTCGCAGGAAGATCTTTGGCTTATCATAAAAGAAAAAGTTTACGA
CTTCACTGACTACATTGCGCTACATCCTGGAGGTGAAGCCATGCTTCGAA
ACGCTGGACAAGACTCCACAAAAGGGTTCTCTGGGTCGCAACATCCAGCT
CGAGTTTGGGATATGATCGATGAATTCTACATCGGGGATCTCGCTCTACC
CGAAACATCCGACAAGAAAGAGGACTAA
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