Ggra3103.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3103.t1
Unique NameGgra3103.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:142864..143829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004348393.1
Preferred nameSKY1
PFAMsPkinase
Max annot lvl33154|Opisthokonta
KEGG koko:K08831,ko:K08832,ko:K15409
KEGG Pathwayko05168,map05168
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030003,GO:0030424,GO:0030865,GO:0031323,GO:0031325,GO:0032153,GO:0032386,GO:0032388,GO:0032507,GO:0032535,GO:0032879,GO:0032880,GO:0033036,GO:0033120,GO:0033157,GO:0033267,GO:0033365,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0035556,GO:0036211,GO:0042221,GO:0042306,GO:0042307,GO:0042493,GO:0042592,GO:0042742,GO:0042995,GO:0043005,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044306,GO:0044424,GO:0044444,GO:0044456,GO:0044463,GO:0044464,GO:0045185,GO:0045202,GO:0045935,GO:0046483,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0048786,GO:0048789,GO:0048878,GO:0050265,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050801,GO:0050808,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051179,GO:0051222,GO:0051223,GO:0051235,GO:0051252,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0051704,GO:0051707,GO:0051716,GO:0055080,GO:0055082,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070569,GO:0070727,GO:0071704,GO:0071826,GO:0071840,GO:0072595,GO:0080090,GO:0090066,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0098542,GO:0098793,GO:0098916,GO:0099536,GO:0099537,GO:0120025,GO:0120038,GO:0140096,GO:0140098,GO:0150034,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1903311,GO:1903313,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990709
Evalue4.07e-65
EggNOG OGsKOG1290@1|root,KOG1290@2759|Eukaryota,38CNN@33154|Opisthokonta
EC2.7.11.1
DescriptionSRSF protein kinase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3103Ggra3103Gracilaria gracilis GNS1m malegenetig00000120_pilon 142864..143829 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3103.t1.stop1Ggra3103.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 142864..142866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3103.t1.CDS1Ggra3103.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 142864..143829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3103.t1.exon1Ggra3103.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 142864..143829 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3103.t1.start1Ggra3103.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 143827..143829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3103.t1Ggra3103.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 142864..143829 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3103.t1 ID=Ggra3103.t1|Name=Ggra3103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=322bp
MHEVEVKCTAYSQYLIDRRRHEILNGNNASESSDVQNGVRTTSKTYRRNQ
KKRLKAKAKRQAERRSALPESPFGELMGPSVSPTSTPSKVTESPRPVTAD
NTIYGSKYDSRDLNDDGTKPQENGDAFDKFELGSIINKDEMFARGAVKIA
DLGNACWVNKHFTEDIQTRQYRSPEVILGAKYNSSVDIWSAACLIFEILT
GEYLFDPHSGLEYDRDEDHLALMMELLGPMPRYLTRKGEFSRELFTRNGE
LRHIKHLDSFPLNEVLEEKYKFGSEDASLISSFLEPMLHLDPERRATAKE
CLAHEFVAEVAEDEVVDIAET*
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spliced messenger RNA

>Ggra3103.t1 ID=Ggra3103.t1|Name=Ggra3103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000120_pilon:142864..143829- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGAAGTAGAGGTGAAATGCACGGCGTACAGCCAATATCTGATTGA
CCGCCGTCGGCATGAGATTCTGAACGGTAATAATGCATCGGAAAGTTCAG
ACGTGCAGAACGGTGTAAGAACAACGTCTAAAACATATCGTCGAAACCAG
AAGAAACGGCTGAAGGCAAAAGCAAAGCGCCAAGCGGAACGAAGGTCCGC
TCTGCCTGAATCTCCGTTTGGAGAGTTAATGGGACCCTCAGTGTCGCCGA
CGTCAACCCCATCCAAAGTTACAGAGTCACCGAGGCCGGTAACAGCCGAC
AACACGATATATGGCTCGAAGTATGACTCTCGCGATTTGAATGATGATGG
AACTAAACCTCAGGAAAATGGTGATGCTTTTGATAAGTTTGAACTTGGCT
CTATTATTAACAAGGATGAAATGTTTGCACGTGGGGCAGTGAAAATAGCA
GACCTCGGAAACGCATGCTGGGTGAACAAGCACTTCACGGAAGACATTCA
GACACGACAATATCGAAGTCCGGAAGTGATCTTGGGGGCCAAATACAACA
GCTCTGTGGATATTTGGTCGGCAGCATGTTTGATTTTTGAGATACTAACT
GGAGAATATCTTTTCGACCCTCATTCGGGTCTAGAATATGACAGGGATGA
GGATCACCTGGCTCTAATGATGGAGTTGTTAGGACCGATGCCAAGGTATT
TGACTCGAAAGGGGGAGTTTAGTCGAGAACTGTTCACAAGGAACGGAGAA
CTGAGACACATCAAGCATTTGGACTCGTTTCCGTTGAATGAGGTGCTGGA
AGAGAAGTATAAATTCGGAAGTGAAGATGCGAGTCTGATAAGTTCTTTCC
TGGAGCCGATGCTGCACCTGGACCCGGAGAGACGGGCGACAGCCAAGGAA
TGTCTTGCGCACGAGTTTGTGGCAGAAGTAGCTGAAGACGAGGTCGTGGA
CATAGCGGAGACGTGA
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protein sequence of Ggra3103.t1

>Ggra3103.t1 ID=Ggra3103.t1|Name=Ggra3103.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MHEVEVKCTAYSQYLIDRRRHEILNGNNASESSDVQNGVRTTSKTYRRNQ
KKRLKAKAKRQAERRSALPESPFGELMGPSVSPTSTPSKVTESPRPVTAD
NTIYGSKYDSRDLNDDGTKPQENGDAFDKFELGSIINKDEMFARGAVKIA
DLGNACWVNKHFTEDIQTRQYRSPEVILGAKYNSSVDIWSAACLIFEILT
GEYLFDPHSGLEYDRDEDHLALMMELLGPMPRYLTRKGEFSRELFTRNGE
LRHIKHLDSFPLNEVLEEKYKFGSEDASLISSFLEPMLHLDPERRATAKE
CLAHEFVAEVAEDEVVDIAET*
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mRNA from alignment at tig00000120_pilon:142864..143829-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3103.t1 ID=Ggra3103.t1|Name=Ggra3103.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000120_pilon:142864..143829- (Gracilaria gracilis GNS1m male)
ATGCATGAAGTAGAGGTGAAATGCACGGCGTACAGCCAATATCTGATTGA
CCGCCGTCGGCATGAGATTCTGAACGGTAATAATGCATCGGAAAGTTCAG
ACGTGCAGAACGGTGTAAGAACAACGTCTAAAACATATCGTCGAAACCAG
AAGAAACGGCTGAAGGCAAAAGCAAAGCGCCAAGCGGAACGAAGGTCCGC
TCTGCCTGAATCTCCGTTTGGAGAGTTAATGGGACCCTCAGTGTCGCCGA
CGTCAACCCCATCCAAAGTTACAGAGTCACCGAGGCCGGTAACAGCCGAC
AACACGATATATGGCTCGAAGTATGACTCTCGCGATTTGAATGATGATGG
AACTAAACCTCAGGAAAATGGTGATGCTTTTGATAAGTTTGAACTTGGCT
CTATTATTAACAAGGATGAAATGTTTGCACGTGGGGCAGTGAAAATAGCA
GACCTCGGAAACGCATGCTGGGTGAACAAGCACTTCACGGAAGACATTCA
GACACGACAATATCGAAGTCCGGAAGTGATCTTGGGGGCCAAATACAACA
GCTCTGTGGATATTTGGTCGGCAGCATGTTTGATTTTTGAGATACTAACT
GGAGAATATCTTTTCGACCCTCATTCGGGTCTAGAATATGACAGGGATGA
GGATCACCTGGCTCTAATGATGGAGTTGTTAGGACCGATGCCAAGGTATT
TGACTCGAAAGGGGGAGTTTAGTCGAGAACTGTTCACAAGGAACGGAGAA
CTGAGACACATCAAGCATTTGGACTCGTTTCCGTTGAATGAGGTGCTGGA
AGAGAAGTATAAATTCGGAAGTGAAGATGCGAGTCTGATAAGTTCTTTCC
TGGAGCCGATGCTGCACCTGGACCCGGAGAGACGGGCGACAGCCAAGGAA
TGTCTTGCGCACGAGTTTGTGGCAGAAGTAGCTGAAGACGAGGTCGTGGA
CATAGCGGAGACGTGA
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Coding sequence (CDS) from alignment at tig00000120_pilon:142864..143829-

>Ggra3103.t1 ID=Ggra3103.t1|Name=Ggra3103.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=966bp|location=Sequence derived from alignment at tig00000120_pilon:142864..143829- (Gracilaria gracilis GNS1m male)
ATGCATGAAGTAGAGGTGAAATGCACGGCGTACAGCCAATATCTGATTGA
CCGCCGTCGGCATGAGATTCTGAACGGTAATAATGCATCGGAAAGTTCAG
ACGTGCAGAACGGTGTAAGAACAACGTCTAAAACATATCGTCGAAACCAG
AAGAAACGGCTGAAGGCAAAAGCAAAGCGCCAAGCGGAACGAAGGTCCGC
TCTGCCTGAATCTCCGTTTGGAGAGTTAATGGGACCCTCAGTGTCGCCGA
CGTCAACCCCATCCAAAGTTACAGAGTCACCGAGGCCGGTAACAGCCGAC
AACACGATATATGGCTCGAAGTATGACTCTCGCGATTTGAATGATGATGG
AACTAAACCTCAGGAAAATGGTGATGCTTTTGATAAGTTTGAACTTGGCT
CTATTATTAACAAGGATGAAATGTTTGCACGTGGGGCAGTGAAAATAGCA
GACCTCGGAAACGCATGCTGGGTGAACAAGCACTTCACGGAAGACATTCA
GACACGACAATATCGAAGTCCGGAAGTGATCTTGGGGGCCAAATACAACA
GCTCTGTGGATATTTGGTCGGCAGCATGTTTGATTTTTGAGATACTAACT
GGAGAATATCTTTTCGACCCTCATTCGGGTCTAGAATATGACAGGGATGA
GGATCACCTGGCTCTAATGATGGAGTTGTTAGGACCGATGCCAAGGTATT
TGACTCGAAAGGGGGAGTTTAGTCGAGAACTGTTCACAAGGAACGGAGAA
CTGAGACACATCAAGCATTTGGACTCGTTTCCGTTGAATGAGGTGCTGGA
AGAGAAGTATAAATTCGGAAGTGAAGATGCGAGTCTGATAAGTTCTTTCC
TGGAGCCGATGCTGCACCTGGACCCGGAGAGACGGGCGACAGCCAAGGAA
TGTCTTGCGCACGAGTTTGTGGCAGAAGTAGCTGAAGACGAGGTCGTGGA
CATAGCGGAGACGTGA
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