Ggra3100.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3100.t1
Unique NameGgra3100.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:135266..137309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3100Ggra3100Gracilaria gracilis GNS1m malegenetig00000120_pilon 135266..137309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1Ggra3100.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 135266..137309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1.stop1Ggra3100.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 135266..135268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1.CDS1Ggra3100.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 135266..135279 -
Ggra3100.t1.CDS2Ggra3100.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000120_pilon 135497..135598 -
Ggra3100.t1.CDS3Ggra3100.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000120_pilon 135797..137309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1.exon1Ggra3100.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 135266..135279 -
Ggra3100.t1.exon2Ggra3100.t1.exon2Gracilaria gracilis GNS1m maleexontig00000120_pilon 135497..135598 -
Ggra3100.t1.exon3Ggra3100.t1.exon3Gracilaria gracilis GNS1m maleexontig00000120_pilon 135797..137309 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1.intron1Ggra3100.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000120_pilon 135280..135496 -
Ggra3100.t1.intron2Ggra3100.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000120_pilon 135599..135796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3100.t1.start1Ggra3100.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 137307..137309 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3100.t1 ID=Ggra3100.t1|Name=Ggra3100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MARLQVRLLFRHKQYRFFVRTAKEEPSFFDLCKAIVRTLRLPIPPSRLAD
IDRSPLRLTYFDEDTPHSLSSDEALRKALKIDPNHLKIRMMYIDKMHMDR
SETRKPSSKGTSRRSGSRSRSRTKSPSRSGRSRSASRASGRASPTRSFSH
DVLASPTALVAILTHLKRRGTRQVKAGIQNLQEAIILNSCDAAKLDEARD
NLARIFSVFLNRVSEERSSTVPEELVETTLDLFEKVGEEASITSATIESA
SELLRAIAENPSDVHCLKEKWHAIVAHSHNQKPADGNEPSSSSSETKSSK
KSKSKKKNKKKRKKHRYRRYSNVFFSAEVDPFIEEFGTLIRAGDEQVVDK
YKRLVTSATDNRSLLRVRDLIDGRFCRSIEKCFFHAVRKYGMSDTHQVNP
RGRKALARTLVSRLERVGFDEKFIKRAIKLALAMALDPGVVELIHLFAMN
GGAEIDDEEVLAMEEEFGREPIDDMIDLDAEDSELDDVDDHMFEMRHQRR
RHGKPAEERWGDLPEDEENDHASDDTSSLSDRTVDTSKRLRA*
back to top

spliced messenger RNA

>Ggra3100.t1 ID=Ggra3100.t1|Name=Ggra3100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000120_pilon:135266..137309- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCCTTCAAGTGCGGCTACTCTTTAGACACAAGCAATACCGCTT
CTTTGTTCGCACGGCGAAAGAAGAACCCTCTTTCTTCGATCTTTGCAAAG
CCATTGTGCGAACGCTTCGACTACCCATACCTCCGTCTCGTCTCGCCGAC
ATTGATCGTTCACCGCTACGTCTCACCTACTTTGATGAAGATACTCCTCA
TTCTCTTTCCTCGGATGAGGCCTTGAGAAAGGCGCTAAAGATAGATCCTA
ATCATTTGAAGATTAGAATGATGTACATCGACAAGATGCATATGGATCGT
TCAGAGACAAGGAAGCCGTCTTCAAAGGGCACTTCACGTCGCTCTGGTTC
TCGTTCTCGGTCTCGTACCAAATCGCCCAGTCGTTCAGGACGCTCTCGTT
CTGCCTCTCGCGCCTCTGGAAGAGCATCTCCTACACGTTCGTTCTCGCAT
GATGTCCTTGCTTCTCCAACGGCCCTCGTTGCTATATTGACTCATTTGAA
GAGACGGGGCACCAGACAAGTCAAGGCTGGAATCCAAAATCTGCAGGAGG
CTATCATTCTTAACTCATGTGATGCAGCCAAGCTTGATGAAGCGCGTGAC
AACTTGGCACGAATATTTTCGGTGTTCCTCAATCGCGTTTCTGAAGAACG
TTCGAGCACAGTGCCGGAAGAACTTGTGGAGACTACTTTGGATCTTTTCG
AGAAAGTCGGAGAGGAAGCTTCTATTACAAGTGCTACTATTGAATCTGCA
AGTGAACTTCTTCGTGCCATTGCTGAAAACCCATCTGATGTTCATTGTTT
GAAGGAGAAGTGGCATGCAATCGTCGCACACAGCCATAACCAAAAGCCTG
CTGACGGTAATGAACCCTCCTCATCCTCTTCGGAAACAAAGTCATCGAAG
AAGAGCAAGAGCAAGAAAAAGAATAAGAAGAAGAGAAAGAAGCATCGTTA
CCGTCGATATTCAAACGTGTTTTTCTCAGCCGAAGTAGATCCCTTCATAG
AAGAATTTGGTACTCTTATCAGGGCCGGAGATGAGCAAGTTGTAGACAAG
TACAAGCGACTTGTTACGTCCGCAACGGACAATCGCTCACTTTTGAGAGT
TCGTGATTTAATAGACGGTCGTTTCTGCCGTTCCATTGAGAAGTGCTTCT
TCCATGCTGTAAGGAAATATGGCATGTCGGATACGCATCAAGTCAACCCT
CGTGGACGCAAAGCGCTTGCTCGGACCCTTGTGAGCAGACTAGAAAGAGT
TGGCTTTGATGAGAAATTTATCAAAAGGGCTATTAAACTAGCTCTTGCGA
TGGCGTTGGACCCTGGAGTGGTTGAACTGATTCACCTTTTCGCAATGAAT
GGAGGTGCGGAGATAGACGACGAGGAGGTTTTGGCCATGGAAGAAGAATT
TGGACGAGAGCCTATTGATGATATGATTGATTTGGATGCCGAGGATTCTG
AATTAGACGATGTGGATGACCATATGTTTGAAATGAGGCATCAAAGGAGG
AGACATGGTAAACCGGCAGAGGAACGATGGGGTGATCTCCCGGAAGATGA
AGAAAATGATCACGCATCAGATGACACTAGCAGTCTGAGTGATAGAACTG
TTGACACTTCAAAGAGACTACGCGCCTAG
back to top

protein sequence of Ggra3100.t1

>Ggra3100.t1 ID=Ggra3100.t1|Name=Ggra3100.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MARLQVRLLFRHKQYRFFVRTAKEEPSFFDLCKAIVRTLRLPIPPSRLAD
IDRSPLRLTYFDEDTPHSLSSDEALRKALKIDPNHLKIRMMYIDKMHMDR
SETRKPSSKGTSRRSGSRSRSRTKSPSRSGRSRSASRASGRASPTRSFSH
DVLASPTALVAILTHLKRRGTRQVKAGIQNLQEAIILNSCDAAKLDEARD
NLARIFSVFLNRVSEERSSTVPEELVETTLDLFEKVGEEASITSATIESA
SELLRAIAENPSDVHCLKEKWHAIVAHSHNQKPADGNEPSSSSSETKSSK
KSKSKKKNKKKRKKHRYRRYSNVFFSAEVDPFIEEFGTLIRAGDEQVVDK
YKRLVTSATDNRSLLRVRDLIDGRFCRSIEKCFFHAVRKYGMSDTHQVNP
RGRKALARTLVSRLERVGFDEKFIKRAIKLALAMALDPGVVELIHLFAMN
GGAEIDDEEVLAMEEEFGREPIDDMIDLDAEDSELDDVDDHMFEMRHQRR
RHGKPAEERWGDLPEDEENDHASDDTSSLSDRTVDTSKRLRA*
back to top

mRNA from alignment at tig00000120_pilon:135266..137309-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3100.t1 ID=Ggra3100.t1|Name=Ggra3100.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2044bp|location=Sequence derived from alignment at tig00000120_pilon:135266..137309- (Gracilaria gracilis GNS1m male)
ATGGCTCGCCTTCAAGTGCGGCTACTCTTTAGACACAAGCAATACCGCTT
CTTTGTTCGCACGGCGAAAGAAGAACCCTCTTTCTTCGATCTTTGCAAAG
CCATTGTGCGAACGCTTCGACTACCCATACCTCCGTCTCGTCTCGCCGAC
ATTGATCGTTCACCGCTACGTCTCACCTACTTTGATGAAGATACTCCTCA
TTCTCTTTCCTCGGATGAGGCCTTGAGAAAGGCGCTAAAGATAGATCCTA
ATCATTTGAAGATTAGAATGATGTACATCGACAAGATGCATATGGATCGT
TCAGAGACAAGGAAGCCGTCTTCAAAGGGCACTTCACGTCGCTCTGGTTC
TCGTTCTCGGTCTCGTACCAAATCGCCCAGTCGTTCAGGACGCTCTCGTT
CTGCCTCTCGCGCCTCTGGAAGAGCATCTCCTACACGTTCGTTCTCGCAT
GATGTCCTTGCTTCTCCAACGGCCCTCGTTGCTATATTGACTCATTTGAA
GAGACGGGGCACCAGACAAGTCAAGGCTGGAATCCAAAATCTGCAGGAGG
CTATCATTCTTAACTCATGTGATGCAGCCAAGCTTGATGAAGCGCGTGAC
AACTTGGCACGAATATTTTCGGTGTTCCTCAATCGCGTTTCTGAAGAACG
TTCGAGCACAGTGCCGGAAGAACTTGTGGAGACTACTTTGGATCTTTTCG
AGAAAGTCGGAGAGGAAGCTTCTATTACAAGTGCTACTATTGAATCTGCA
AGTGAACTTCTTCGTGCCATTGCTGAAAACCCATCTGATGTTCATTGTTT
GAAGGAGAAGTGGCATGCAATCGTCGCACACAGCCATAACCAAAAGCCTG
CTGACGGTAATGAACCCTCCTCATCCTCTTCGGAAACAAAGTCATCGAAG
AAGAGCAAGAGCAAGAAAAAGAATAAGAAGAAGAGAAAGAAGCATCGTTA
CCGTCGATATTCAAACGTGTTTTTCTCAGCCGAAGTAGATCCCTTCATAG
AAGAATTTGGTACTCTTATCAGGGCCGGAGATGAGCAAGTTGTAGACAAG
TACAAGCGACTTGTTACGTCCGCAACGGACAATCGCTCACTTTTGAGAGT
TCGTGATTTAATAGACGGTCGTTTCTGCCGTTCCATTGAGAAGTGCTTCT
TCCATGCTGTAAGGAAATATGGCATGTCGGATACGCATCAAGTCAACCCT
CGTGGACGCAAAGCGCTTGCTCGGACCCTTGTGAGCAGACTAGAAAGAGT
TGGCTTTGATGAGAAATTTATCAAAAGGGCTATTAAACTAGCTCTTGCGA
TGGCGTTGGACCCTGGAGTGGTTGAACTGATTCACCTTTTCGCAATGAAT
GGAGGTGCGGAGATAGACGACGAGGAGGTTTTGGCCATGGAAGAAGAATT
TGGACGAGAGCCTATTGATGATATGATTGATTTGGATGCCGAGGATTCTG
AATTAGACGATGTGGATGACCATATGTTTGAAATGAGGCATCAAAGGAGG
AGACATGGTAAACGTAGGTCAAGACATCGACATGTGGATGAAGAAGATGA
ACACGGTCGTGGAAGGAGTCGCAGTATAAGCCGAAGCCGAAGCCGAAGCC
GAAACCGAAGCCAAAGCCGAAGCCGTAACCGCAGCCGCAGTCGTAGTCGC
AGTCGCAGTCGCAGTCAGCGGAGCCAAAGCCGTCAAAGCCACGGCCGCTT
CGGATTTGCAGCGGCAGAGGAACGATGGGGTGATCTCCCGGAAGATGAAG
AAAATGATCACGCATCAGATGACACTAGCAGTCTGAGTGATAGAACTGTT
GACACTTCAAAGAGTGAGTGGGCAAGAATTGAAATGGAGAAAGCTGCGCA
TTCCAGGAGGCAGGAACACTCAGTCTCAAGCGGGAGACGAACCAGATACT
CTCCGCCTAGCCTCCTCCGCCGTGCTCGCTGAGTCTGTTTCTGTGTAGAA
TATCAATGCTCACGACTTCTTGTTTCTGCCTAAAACGTAACTTTGTGTTG
AATTCTTTTAATGCTCTGATTCACCGCCAGGACTACGCGCCTAG
back to top

Coding sequence (CDS) from alignment at tig00000120_pilon:135266..137309-

>Ggra3100.t1 ID=Ggra3100.t1|Name=Ggra3100.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000120_pilon:135266..137309- (Gracilaria gracilis GNS1m male)
ATGGCTCGCCTTCAAGTGCGGCTACTCTTTAGACACAAGCAATACCGCTT
CTTTGTTCGCACGGCGAAAGAAGAACCCTCTTTCTTCGATCTTTGCAAAG
CCATTGTGCGAACGCTTCGACTACCCATACCTCCGTCTCGTCTCGCCGAC
ATTGATCGTTCACCGCTACGTCTCACCTACTTTGATGAAGATACTCCTCA
TTCTCTTTCCTCGGATGAGGCCTTGAGAAAGGCGCTAAAGATAGATCCTA
ATCATTTGAAGATTAGAATGATGTACATCGACAAGATGCATATGGATCGT
TCAGAGACAAGGAAGCCGTCTTCAAAGGGCACTTCACGTCGCTCTGGTTC
TCGTTCTCGGTCTCGTACCAAATCGCCCAGTCGTTCAGGACGCTCTCGTT
CTGCCTCTCGCGCCTCTGGAAGAGCATCTCCTACACGTTCGTTCTCGCAT
GATGTCCTTGCTTCTCCAACGGCCCTCGTTGCTATATTGACTCATTTGAA
GAGACGGGGCACCAGACAAGTCAAGGCTGGAATCCAAAATCTGCAGGAGG
CTATCATTCTTAACTCATGTGATGCAGCCAAGCTTGATGAAGCGCGTGAC
AACTTGGCACGAATATTTTCGGTGTTCCTCAATCGCGTTTCTGAAGAACG
TTCGAGCACAGTGCCGGAAGAACTTGTGGAGACTACTTTGGATCTTTTCG
AGAAAGTCGGAGAGGAAGCTTCTATTACAAGTGCTACTATTGAATCTGCA
AGTGAACTTCTTCGTGCCATTGCTGAAAACCCATCTGATGTTCATTGTTT
GAAGGAGAAGTGGCATGCAATCGTCGCACACAGCCATAACCAAAAGCCTG
CTGACGGTAATGAACCCTCCTCATCCTCTTCGGAAACAAAGTCATCGAAG
AAGAGCAAGAGCAAGAAAAAGAATAAGAAGAAGAGAAAGAAGCATCGTTA
CCGTCGATATTCAAACGTGTTTTTCTCAGCCGAAGTAGATCCCTTCATAG
AAGAATTTGGTACTCTTATCAGGGCCGGAGATGAGCAAGTTGTAGACAAG
TACAAGCGACTTGTTACGTCCGCAACGGACAATCGCTCACTTTTGAGAGT
TCGTGATTTAATAGACGGTCGTTTCTGCCGTTCCATTGAGAAGTGCTTCT
TCCATGCTGTAAGGAAATATGGCATGTCGGATACGCATCAAGTCAACCCT
CGTGGACGCAAAGCGCTTGCTCGGACCCTTGTGAGCAGACTAGAAAGAGT
TGGCTTTGATGAGAAATTTATCAAAAGGGCTATTAAACTAGCTCTTGCGA
TGGCGTTGGACCCTGGAGTGGTTGAACTGATTCACCTTTTCGCAATGAAT
GGAGGTGCGGAGATAGACGACGAGGAGGTTTTGGCCATGGAAGAAGAATT
TGGACGAGAGCCTATTGATGATATGATTGATTTGGATGCCGAGGATTCTG
AATTAGACGATGTGGATGACCATATGTTTGAAATGAGGCATCAAAGGAGG
AGACATGGTAAACCGGCAGAGGAACGATGGGGTGATCTCCCGGAAGATGA
AGAAAATGATCACGCATCAGATGACACTAGCAGTCTGAGTGATAGAACTG
TTGACACTTCAAAGAGACTACGCGCCTAG
back to top