Ggra3093.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3093.t1
Unique NameGgra3093.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000120_piloncontigtig00000120_pilon:60728..62113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3093Ggra3093Gracilaria gracilis GNS1m malegenetig00000120_pilon 60728..62113 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3093.t1.start1Ggra3093.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000120_pilon 60728..60730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3093.t1.CDS1Ggra3093.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000120_pilon 60728..62113 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3093.t1.exon1Ggra3093.t1.exon1Gracilaria gracilis GNS1m maleexontig00000120_pilon 60728..62113 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3093.t1.stop1Ggra3093.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000120_pilon 62111..62113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3093.t1Ggra3093.t1Gracilaria gracilis GNS1m malepolypeptidetig00000120_pilon 60728..62113 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3093.t1 ID=Ggra3093.t1|Name=Ggra3093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MHDAAPSTTRARKPKRRPPAATGAPATGSTSGATSRLRSRAGERSHAASN
SGSPPSGVEQPRRAPPPPHAWVPDDFVAMAREVHAHASVEFERFFGGSHP
KLPPQLARKARGDVIALMRRLANFGDVAAWVGRSRCDAATFTAVLAAERA
FVQMHNDSSDAAMQALGKARADRHRVQSERGKLALESKALAEQMRMERAA
RSKLAHAKTATDSSLLSSRTRYTQLRNKYRVLSHTLCKAKLSELEARRRL
DRLQLKISALLGDVIIPTLDTLSPSQPQWLADTHIPLVEQQRDAELDEQP
QRRALNAGDAQQPNIPERSGSPFVGYDQLLQESKEEQQLRLLKYRLRMCE
METNEWRQSLSYEQQRIRLISRARTRLEEDVQRQKQANREWHHAKLTTPV
SRSASKSGGAGVRTIAKIRAAVRASLPSGGDSGGGATKVIAKKTRKGRVV
KSLSKTRDDWS*
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spliced messenger RNA

>Ggra3093.t1 ID=Ggra3093.t1|Name=Ggra3093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000120_pilon:60728..62113+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGACGCCGCGCCGAGCACAACGCGCGCGCGAAAGCCGAAGCGCCG
CCCACCGGCAGCGACAGGCGCGCCCGCGACAGGCAGCACGTCCGGCGCGA
CGTCGCGCCTGCGCAGCCGCGCGGGCGAGCGCTCGCACGCCGCGTCGAAC
AGCGGCTCGCCGCCATCGGGCGTCGAGCAGCCGCGCCGCGCGCCGCCGCC
GCCGCACGCGTGGGTGCCGGACGACTTTGTGGCGATGGCGCGCGAGGTGC
ATGCACACGCTTCCGTCGAATTTGAGCGCTTCTTCGGCGGCTCGCACCCC
AAGCTGCCGCCGCAGCTGGCGCGCAAGGCGCGCGGCGACGTCATTGCGCT
CATGCGACGGCTGGCCAACTTTGGCGACGTCGCGGCGTGGGTGGGCAGGT
CGCGCTGCGACGCCGCCACCTTCACGGCGGTTTTGGCGGCGGAGCGCGCG
TTTGTGCAGATGCATAACGACAGTAGCGACGCCGCGATGCAGGCGTTGGG
AAAGGCGCGCGCGGATCGACACCGCGTGCAGAGCGAGCGTGGGAAACTGG
CTTTGGAGAGCAAGGCGCTGGCGGAGCAGATGCGCATGGAACGCGCGGCG
AGGAGCAAGTTGGCGCACGCAAAGACCGCCACTGACTCGTCGTTGCTGTC
ATCGCGCACGCGCTACACGCAGTTGAGGAACAAGTATCGCGTGTTGAGCC
ACACGCTTTGCAAGGCCAAGCTCAGTGAACTGGAGGCAAGGCGGCGGTTG
GATCGGCTGCAACTCAAGATCAGTGCGTTGTTGGGCGATGTGATCATCCC
GACGCTGGATACGTTGTCGCCTTCACAGCCGCAATGGTTGGCGGATACGC
ACATCCCGCTCGTCGAGCAGCAGCGCGACGCGGAGCTTGATGAACAGCCG
CAGCGCCGTGCTCTCAACGCGGGTGACGCGCAGCAGCCAAACATCCCCGA
GCGCTCGGGTTCGCCGTTTGTGGGCTATGACCAGCTGCTGCAGGAAAGCA
AGGAGGAGCAACAGCTACGGCTACTCAAGTACCGGCTGCGCATGTGCGAG
ATGGAGACCAATGAATGGCGCCAATCGTTGTCGTACGAACAGCAGCGCAT
TCGATTGATCAGTCGCGCCAGGACGCGGCTGGAAGAGGATGTACAGCGGC
AGAAGCAGGCCAATCGAGAGTGGCATCATGCCAAGCTCACGACGCCCGTG
TCTCGCAGCGCTTCCAAGAGCGGCGGCGCTGGGGTGAGGACGATTGCCAA
GATTCGCGCCGCCGTGCGGGCTTCGTTGCCGTCCGGCGGGGACAGTGGCG
GCGGCGCCACCAAGGTGATCGCGAAGAAGACACGGAAAGGACGGGTGGTC
AAGTCGTTGAGCAAAACGCGCGATGACTGGAGTTAG
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protein sequence of Ggra3093.t1

>Ggra3093.t1 ID=Ggra3093.t1|Name=Ggra3093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MHDAAPSTTRARKPKRRPPAATGAPATGSTSGATSRLRSRAGERSHAASN
SGSPPSGVEQPRRAPPPPHAWVPDDFVAMAREVHAHASVEFERFFGGSHP
KLPPQLARKARGDVIALMRRLANFGDVAAWVGRSRCDAATFTAVLAAERA
FVQMHNDSSDAAMQALGKARADRHRVQSERGKLALESKALAEQMRMERAA
RSKLAHAKTATDSSLLSSRTRYTQLRNKYRVLSHTLCKAKLSELEARRRL
DRLQLKISALLGDVIIPTLDTLSPSQPQWLADTHIPLVEQQRDAELDEQP
QRRALNAGDAQQPNIPERSGSPFVGYDQLLQESKEEQQLRLLKYRLRMCE
METNEWRQSLSYEQQRIRLISRARTRLEEDVQRQKQANREWHHAKLTTPV
SRSASKSGGAGVRTIAKIRAAVRASLPSGGDSGGGATKVIAKKTRKGRVV
KSLSKTRDDWS*
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mRNA from alignment at tig00000120_pilon:60728..62113+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3093.t1 ID=Ggra3093.t1|Name=Ggra3093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000120_pilon:60728..62113+ (Gracilaria gracilis GNS1m male)
ATGCACGACGCCGCGCCGAGCACAACGCGCGCGCGAAAGCCGAAGCGCCG
CCCACCGGCAGCGACAGGCGCGCCCGCGACAGGCAGCACGTCCGGCGCGA
CGTCGCGCCTGCGCAGCCGCGCGGGCGAGCGCTCGCACGCCGCGTCGAAC
AGCGGCTCGCCGCCATCGGGCGTCGAGCAGCCGCGCCGCGCGCCGCCGCC
GCCGCACGCGTGGGTGCCGGACGACTTTGTGGCGATGGCGCGCGAGGTGC
ATGCACACGCTTCCGTCGAATTTGAGCGCTTCTTCGGCGGCTCGCACCCC
AAGCTGCCGCCGCAGCTGGCGCGCAAGGCGCGCGGCGACGTCATTGCGCT
CATGCGACGGCTGGCCAACTTTGGCGACGTCGCGGCGTGGGTGGGCAGGT
CGCGCTGCGACGCCGCCACCTTCACGGCGGTTTTGGCGGCGGAGCGCGCG
TTTGTGCAGATGCATAACGACAGTAGCGACGCCGCGATGCAGGCGTTGGG
AAAGGCGCGCGCGGATCGACACCGCGTGCAGAGCGAGCGTGGGAAACTGG
CTTTGGAGAGCAAGGCGCTGGCGGAGCAGATGCGCATGGAACGCGCGGCG
AGGAGCAAGTTGGCGCACGCAAAGACCGCCACTGACTCGTCGTTGCTGTC
ATCGCGCACGCGCTACACGCAGTTGAGGAACAAGTATCGCGTGTTGAGCC
ACACGCTTTGCAAGGCCAAGCTCAGTGAACTGGAGGCAAGGCGGCGGTTG
GATCGGCTGCAACTCAAGATCAGTGCGTTGTTGGGCGATGTGATCATCCC
GACGCTGGATACGTTGTCGCCTTCACAGCCGCAATGGTTGGCGGATACGC
ACATCCCGCTCGTCGAGCAGCAGCGCGACGCGGAGCTTGATGAACAGCCG
CAGCGCCGTGCTCTCAACGCGGGTGACGCGCAGCAGCCAAACATCCCCGA
GCGCTCGGGTTCGCCGTTTGTGGGCTATGACCAGCTGCTGCAGGAAAGCA
AGGAGGAGCAACAGCTACGGCTACTCAAGTACCGGCTGCGCATGTGCGAG
ATGGAGACCAATGAATGGCGCCAATCGTTGTCGTACGAACAGCAGCGCAT
TCGATTGATCAGTCGCGCCAGGACGCGGCTGGAAGAGGATGTACAGCGGC
AGAAGCAGGCCAATCGAGAGTGGCATCATGCCAAGCTCACGACGCCCGTG
TCTCGCAGCGCTTCCAAGAGCGGCGGCGCTGGGGTGAGGACGATTGCCAA
GATTCGCGCCGCCGTGCGGGCTTCGTTGCCGTCCGGCGGGGACAGTGGCG
GCGGCGCCACCAAGGTGATCGCGAAGAAGACACGGAAAGGACGGGTGGTC
AAGTCGTTGAGCAAAACGCGCGATGACTGGAGTTAG
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Coding sequence (CDS) from alignment at tig00000120_pilon:60728..62113+

>Ggra3093.t1 ID=Ggra3093.t1|Name=Ggra3093.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000120_pilon:60728..62113+ (Gracilaria gracilis GNS1m male)
ATGCACGACGCCGCGCCGAGCACAACGCGCGCGCGAAAGCCGAAGCGCCG
CCCACCGGCAGCGACAGGCGCGCCCGCGACAGGCAGCACGTCCGGCGCGA
CGTCGCGCCTGCGCAGCCGCGCGGGCGAGCGCTCGCACGCCGCGTCGAAC
AGCGGCTCGCCGCCATCGGGCGTCGAGCAGCCGCGCCGCGCGCCGCCGCC
GCCGCACGCGTGGGTGCCGGACGACTTTGTGGCGATGGCGCGCGAGGTGC
ATGCACACGCTTCCGTCGAATTTGAGCGCTTCTTCGGCGGCTCGCACCCC
AAGCTGCCGCCGCAGCTGGCGCGCAAGGCGCGCGGCGACGTCATTGCGCT
CATGCGACGGCTGGCCAACTTTGGCGACGTCGCGGCGTGGGTGGGCAGGT
CGCGCTGCGACGCCGCCACCTTCACGGCGGTTTTGGCGGCGGAGCGCGCG
TTTGTGCAGATGCATAACGACAGTAGCGACGCCGCGATGCAGGCGTTGGG
AAAGGCGCGCGCGGATCGACACCGCGTGCAGAGCGAGCGTGGGAAACTGG
CTTTGGAGAGCAAGGCGCTGGCGGAGCAGATGCGCATGGAACGCGCGGCG
AGGAGCAAGTTGGCGCACGCAAAGACCGCCACTGACTCGTCGTTGCTGTC
ATCGCGCACGCGCTACACGCAGTTGAGGAACAAGTATCGCGTGTTGAGCC
ACACGCTTTGCAAGGCCAAGCTCAGTGAACTGGAGGCAAGGCGGCGGTTG
GATCGGCTGCAACTCAAGATCAGTGCGTTGTTGGGCGATGTGATCATCCC
GACGCTGGATACGTTGTCGCCTTCACAGCCGCAATGGTTGGCGGATACGC
ACATCCCGCTCGTCGAGCAGCAGCGCGACGCGGAGCTTGATGAACAGCCG
CAGCGCCGTGCTCTCAACGCGGGTGACGCGCAGCAGCCAAACATCCCCGA
GCGCTCGGGTTCGCCGTTTGTGGGCTATGACCAGCTGCTGCAGGAAAGCA
AGGAGGAGCAACAGCTACGGCTACTCAAGTACCGGCTGCGCATGTGCGAG
ATGGAGACCAATGAATGGCGCCAATCGTTGTCGTACGAACAGCAGCGCAT
TCGATTGATCAGTCGCGCCAGGACGCGGCTGGAAGAGGATGTACAGCGGC
AGAAGCAGGCCAATCGAGAGTGGCATCATGCCAAGCTCACGACGCCCGTG
TCTCGCAGCGCTTCCAAGAGCGGCGGCGCTGGGGTGAGGACGATTGCCAA
GATTCGCGCCGCCGTGCGGGCTTCGTTGCCGTCCGGCGGGGACAGTGGCG
GCGGCGCCACCAAGGTGATCGCGAAGAAGACACGGAAAGGACGGGTGGTC
AAGTCGTTGAGCAAAACGCGCGATGACTGGAGTTAG
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