Ggra3052.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3052.t1
Unique NameGgra3052.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000094_piloncontigtig00000094_pilon:230539..231780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD19635
PFAMsAAA,BCS1_N
Max annot lvl2759|Eukaryota
KEGG koko:K08900
Evalue4.43e-53
EggNOG OGsCOG0465@1|root,KOG0743@2759|Eukaryota
Descriptionrespiratory chain complex III assembly
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3052Ggra3052Gracilaria gracilis GNS1m malegenetig00000094_pilon 230539..232275 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3052.t1.stop1Ggra3052.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000094_pilon 230539..230541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3052.t1.CDS1Ggra3052.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000094_pilon 230539..231780 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3052.t1.exon1Ggra3052.t1.exon1Gracilaria gracilis GNS1m maleexontig00000094_pilon 230539..231780 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3052.t1.start1Ggra3052.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000094_pilon 231778..231780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3052.t1Ggra3052.t1Gracilaria gracilis GNS1m malepolypeptidetig00000094_pilon 230539..231780 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3052.t1 ID=Ggra3052.t1|Name=Ggra3052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MPDAVRARHRELLQHARAATQYCSPPHKEVAPPNGVIKQPEPARAPPAAR
AATDARHDAEAELRHERAPDAQRRFKVFVAQYEMGMPVEDSGCSGGGGGT
VTERHLLLATSGGVSALTAFMSGVVAWCFEKDRLRKHAHRCYELYRFRSE
GGNGYWESQGHRHARALHTVVLADGQMDAIVHDVSNFLQPATRSWFAAHG
IPHRRSYLFYGKPGTGKTSTVRALAGEFGLNCCFLSMTDAAFSNQQLFDA
LRHIPSNALLVLEDVDSLFHHDRSSKATPSLTFSGMLNALDGVASSDGVL
TVMTTNHMERLESALIRGGRVDRRFYFDAPSEKQLQRLFLTFYKGAAPQL
AAQFAAAVLLRAEGAEARSIATLQQMFVYFREQPPSACVQRMDEFFEMHF
PTPPHANNDSLYT*
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spliced messenger RNA

>Ggra3052.t1 ID=Ggra3052.t1|Name=Ggra3052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000094_pilon:230539..231780- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGATGCCGTGCGCGCGCGCCACCGAGAGCTGTTGCAGCACGCGCG
CGCCGCCACGCAGTACTGCTCGCCGCCGCACAAGGAGGTCGCGCCCCCCA
ACGGCGTCATCAAGCAGCCTGAACCGGCGCGCGCGCCGCCCGCTGCGCGC
GCCGCCACCGACGCGCGCCATGACGCGGAGGCCGAGCTGCGCCACGAGCG
CGCGCCGGACGCGCAACGGCGCTTCAAGGTGTTCGTCGCGCAGTACGAGA
TGGGCATGCCCGTCGAGGACAGTGGCTGTAGCGGCGGCGGTGGCGGCACG
GTGACGGAGCGCCACCTACTGCTAGCCACGTCCGGTGGCGTGTCCGCGCT
GACGGCGTTCATGTCCGGCGTGGTGGCGTGGTGCTTTGAGAAGGACCGGC
TGCGCAAGCACGCGCACCGCTGCTACGAGCTGTACCGCTTCCGTTCCGAG
GGCGGCAACGGCTACTGGGAGTCGCAGGGGCACCGGCACGCGCGCGCGCT
GCACACGGTAGTGCTGGCGGACGGGCAGATGGACGCCATCGTGCACGACG
TGAGCAACTTTCTGCAGCCCGCCACGCGCAGCTGGTTCGCCGCGCACGGC
ATCCCGCACCGGCGCAGCTACCTGTTCTACGGAAAGCCGGGCACGGGAAA
GACCAGCACGGTGCGCGCGCTGGCGGGCGAGTTTGGGCTCAACTGCTGCT
TTCTATCCATGACGGACGCGGCGTTCAGCAACCAGCAGCTGTTCGACGCG
CTGCGCCACATCCCGTCCAACGCGCTGCTGGTGCTGGAGGACGTGGACAG
TTTGTTCCACCACGACCGCTCCAGCAAGGCCACGCCGTCGCTCACGTTCT
CGGGCATGCTCAACGCGCTGGACGGCGTGGCCAGCAGCGACGGCGTGCTC
ACCGTGATGACCACCAACCACATGGAGCGGCTGGAGTCGGCGCTCATCCG
CGGCGGGCGCGTGGACCGTCGTTTCTACTTTGACGCGCCGTCCGAAAAGC
AGCTGCAGCGGCTGTTCCTCACCTTCTACAAGGGTGCGGCGCCGCAGCTG
GCGGCGCAGTTTGCGGCCGCGGTGCTGCTGCGCGCCGAGGGCGCCGAGGC
GCGCAGCATCGCCACGCTGCAGCAGATGTTCGTGTACTTTCGCGAGCAGC
CGCCCTCCGCGTGCGTGCAGCGCATGGACGAGTTTTTTGAGATGCACTTT
CCCACCCCACCGCACGCAAACAATGACTCGCTGTACACGTGA
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protein sequence of Ggra3052.t1

>Ggra3052.t1 ID=Ggra3052.t1|Name=Ggra3052.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MPDAVRARHRELLQHARAATQYCSPPHKEVAPPNGVIKQPEPARAPPAAR
AATDARHDAEAELRHERAPDAQRRFKVFVAQYEMGMPVEDSGCSGGGGGT
VTERHLLLATSGGVSALTAFMSGVVAWCFEKDRLRKHAHRCYELYRFRSE
GGNGYWESQGHRHARALHTVVLADGQMDAIVHDVSNFLQPATRSWFAAHG
IPHRRSYLFYGKPGTGKTSTVRALAGEFGLNCCFLSMTDAAFSNQQLFDA
LRHIPSNALLVLEDVDSLFHHDRSSKATPSLTFSGMLNALDGVASSDGVL
TVMTTNHMERLESALIRGGRVDRRFYFDAPSEKQLQRLFLTFYKGAAPQL
AAQFAAAVLLRAEGAEARSIATLQQMFVYFREQPPSACVQRMDEFFEMHF
PTPPHANNDSLYT*
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mRNA from alignment at tig00000094_pilon:230539..231780-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3052.t1 ID=Ggra3052.t1|Name=Ggra3052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000094_pilon:230539..231780- (Gracilaria gracilis GNS1m male)
ATGCCTGATGCCGTGCGCGCGCGCCACCGAGAGCTGTTGCAGCACGCGCG
CGCCGCCACGCAGTACTGCTCGCCGCCGCACAAGGAGGTCGCGCCCCCCA
ACGGCGTCATCAAGCAGCCTGAACCGGCGCGCGCGCCGCCCGCTGCGCGC
GCCGCCACCGACGCGCGCCATGACGCGGAGGCCGAGCTGCGCCACGAGCG
CGCGCCGGACGCGCAACGGCGCTTCAAGGTGTTCGTCGCGCAGTACGAGA
TGGGCATGCCCGTCGAGGACAGTGGCTGTAGCGGCGGCGGTGGCGGCACG
GTGACGGAGCGCCACCTACTGCTAGCCACGTCCGGTGGCGTGTCCGCGCT
GACGGCGTTCATGTCCGGCGTGGTGGCGTGGTGCTTTGAGAAGGACCGGC
TGCGCAAGCACGCGCACCGCTGCTACGAGCTGTACCGCTTCCGTTCCGAG
GGCGGCAACGGCTACTGGGAGTCGCAGGGGCACCGGCACGCGCGCGCGCT
GCACACGGTAGTGCTGGCGGACGGGCAGATGGACGCCATCGTGCACGACG
TGAGCAACTTTCTGCAGCCCGCCACGCGCAGCTGGTTCGCCGCGCACGGC
ATCCCGCACCGGCGCAGCTACCTGTTCTACGGAAAGCCGGGCACGGGAAA
GACCAGCACGGTGCGCGCGCTGGCGGGCGAGTTTGGGCTCAACTGCTGCT
TTCTATCCATGACGGACGCGGCGTTCAGCAACCAGCAGCTGTTCGACGCG
CTGCGCCACATCCCGTCCAACGCGCTGCTGGTGCTGGAGGACGTGGACAG
TTTGTTCCACCACGACCGCTCCAGCAAGGCCACGCCGTCGCTCACGTTCT
CGGGCATGCTCAACGCGCTGGACGGCGTGGCCAGCAGCGACGGCGTGCTC
ACCGTGATGACCACCAACCACATGGAGCGGCTGGAGTCGGCGCTCATCCG
CGGCGGGCGCGTGGACCGTCGTTTCTACTTTGACGCGCCGTCCGAAAAGC
AGCTGCAGCGGCTGTTCCTCACCTTCTACAAGGGTGCGGCGCCGCAGCTG
GCGGCGCAGTTTGCGGCCGCGGTGCTGCTGCGCGCCGAGGGCGCCGAGGC
GCGCAGCATCGCCACGCTGCAGCAGATGTTCGTGTACTTTCGCGAGCAGC
CGCCCTCCGCGTGCGTGCAGCGCATGGACGAGTTTTTTGAGATGCACTTT
CCCACCCCACCGCACGCAAACAATGACTCGCTGTACACGTGA
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Coding sequence (CDS) from alignment at tig00000094_pilon:230539..231780-

>Ggra3052.t1 ID=Ggra3052.t1|Name=Ggra3052.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000094_pilon:230539..231780- (Gracilaria gracilis GNS1m male)
ATGCCTGATGCCGTGCGCGCGCGCCACCGAGAGCTGTTGCAGCACGCGCG
CGCCGCCACGCAGTACTGCTCGCCGCCGCACAAGGAGGTCGCGCCCCCCA
ACGGCGTCATCAAGCAGCCTGAACCGGCGCGCGCGCCGCCCGCTGCGCGC
GCCGCCACCGACGCGCGCCATGACGCGGAGGCCGAGCTGCGCCACGAGCG
CGCGCCGGACGCGCAACGGCGCTTCAAGGTGTTCGTCGCGCAGTACGAGA
TGGGCATGCCCGTCGAGGACAGTGGCTGTAGCGGCGGCGGTGGCGGCACG
GTGACGGAGCGCCACCTACTGCTAGCCACGTCCGGTGGCGTGTCCGCGCT
GACGGCGTTCATGTCCGGCGTGGTGGCGTGGTGCTTTGAGAAGGACCGGC
TGCGCAAGCACGCGCACCGCTGCTACGAGCTGTACCGCTTCCGTTCCGAG
GGCGGCAACGGCTACTGGGAGTCGCAGGGGCACCGGCACGCGCGCGCGCT
GCACACGGTAGTGCTGGCGGACGGGCAGATGGACGCCATCGTGCACGACG
TGAGCAACTTTCTGCAGCCCGCCACGCGCAGCTGGTTCGCCGCGCACGGC
ATCCCGCACCGGCGCAGCTACCTGTTCTACGGAAAGCCGGGCACGGGAAA
GACCAGCACGGTGCGCGCGCTGGCGGGCGAGTTTGGGCTCAACTGCTGCT
TTCTATCCATGACGGACGCGGCGTTCAGCAACCAGCAGCTGTTCGACGCG
CTGCGCCACATCCCGTCCAACGCGCTGCTGGTGCTGGAGGACGTGGACAG
TTTGTTCCACCACGACCGCTCCAGCAAGGCCACGCCGTCGCTCACGTTCT
CGGGCATGCTCAACGCGCTGGACGGCGTGGCCAGCAGCGACGGCGTGCTC
ACCGTGATGACCACCAACCACATGGAGCGGCTGGAGTCGGCGCTCATCCG
CGGCGGGCGCGTGGACCGTCGTTTCTACTTTGACGCGCCGTCCGAAAAGC
AGCTGCAGCGGCTGTTCCTCACCTTCTACAAGGGTGCGGCGCCGCAGCTG
GCGGCGCAGTTTGCGGCCGCGGTGCTGCTGCGCGCCGAGGGCGCCGAGGC
GCGCAGCATCGCCACGCTGCAGCAGATGTTCGTGTACTTTCGCGAGCAGC
CGCCCTCCGCGTGCGTGCAGCGCATGGACGAGTTTTTTGAGATGCACTTT
CCCACCCCACCGCACGCAAACAATGACTCGCTGTACACGTGA
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