Ggra3049.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3049.t1
Unique Name	Ggra3049.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000094_pilon	contig	tig00000094_pilon:17122..18594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3049	Ggra3049	Gracilaria gracilis GNS1m male	gene	tig00000094_pilon 17122..18594 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3049.t1.start1	Ggra3049.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000094_pilon 17122..17124 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3049.t1.CDS1	Ggra3049.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000094_pilon 17122..18594 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3049.t1.exon1	Ggra3049.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000094_pilon 17122..18594 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3049.t1.stop1	Ggra3049.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000094_pilon 18592..18594 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3049.t1	Ggra3049.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000094_pilon 17122..18594 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000094_pilon:17122..18594+
coding sequence from alignment at tig00000094_pilon:17122..18594+

mRNA sequence

>Ggra3049.t1 ID=Ggra3049.t1|Name=Ggra3049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MQLLLQCDAILLNKASVFQSHQVTITQDGSGDDLWSSMRVKMAALHDKDS
VEMSSHFFYLLYGLSCDINDTVGNVGGLLGTSYRCAASDQFEKTVQSVIK
RGLSSLLDCDDPTGAAEVFLNDLQHRGPSRSLPSHAEINVMYIAVSYRYV
YGNGLTADMWRKAVVTMTQIGQRLGYGHIRIWVDKLSITEGMGWSAVGFL
PYLIFPTFVHPNARGDSNRLWIELEKLAASLGPGILTEDTTEDDVMHHLA
ISRSPAECLLSFAEVLVSGCLDQIKVKHEEDRLRMKQWAKALLTTSNVSQ
MFTIPRYDLEGRGDTRHDASMLCLFDDDLMDIYAVRAYIDHTNLQMEKRC
RQDDEEWDGMLEALGYSNIRNSEAVRKLVEKTAFVLHRPNQPTSTSAVCW
YVVCTMRGKVIVEVALSGAAGTDIREWRVTGCKRLKKADIDASVIAAWFL
SSTEEQTFQVIPHAELKWVWKNTPTLLTTVRALLSRIGWS*

spliced messenger RNA

>Ggra3049.t1 ID=Ggra3049.t1|Name=Ggra3049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000094_pilon:17122..18594+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTTTATTACAATGCGATGCCATTCTCCTCAACAAGGCTTCGGT
ATTCCAGTCGCATCAAGTTACGATCACACAAGACGGCTCTGGGGACGATC
TATGGAGCTCCATGAGGGTTAAAATGGCGGCGCTGCATGACAAGGACAGT
GTGGAAATGAGCTCTCATTTCTTTTATCTTCTCTACGGTCTATCGTGTGA
CATCAACGACACTGTCGGTAACGTGGGTGGTCTACTTGGTACGTCGTATA
GGTGTGCCGCATCTGATCAGTTTGAGAAGACTGTCCAAAGTGTCATCAAG
AGAGGACTATCTTCGTTACTAGATTGCGACGACCCCACAGGGGCTGCGGA
GGTATTTTTGAACGACTTACAGCACCGAGGCCCGAGTCGCAGCCTGCCGT
CACATGCAGAAATCAACGTTATGTACATTGCTGTGTCGTACAGATATGTA
TACGGGAACGGCCTTACTGCGGACATGTGGAGAAAAGCTGTCGTAACGAT
GACGCAGATAGGCCAAAGATTAGGGTATGGCCACATCCGAATATGGGTTG
ACAAGCTCTCGATCACGGAAGGCATGGGATGGTCGGCTGTTGGATTCCTG
CCGTATCTCATTTTTCCAACGTTTGTGCATCCAAATGCACGCGGCGATTC
GAACAGATTATGGATCGAACTTGAGAAGCTGGCGGCTTCGCTAGGACCAG
GAATTCTGACCGAAGACACCACTGAAGATGATGTTATGCATCACTTGGCA
ATAAGCAGATCACCAGCGGAGTGCTTGCTGTCATTCGCGGAGGTGCTCGT
CAGCGGATGTCTCGACCAGATTAAAGTGAAGCATGAGGAAGACAGACTCC
GCATGAAACAATGGGCGAAGGCATTGCTCACGACATCGAACGTGAGTCAA
ATGTTCACGATTCCTAGATACGATTTGGAGGGTAGAGGCGACACAAGACA
TGACGCTTCAATGCTCTGCCTGTTCGACGATGATCTCATGGACATTTACG
CAGTACGAGCATATATTGACCATACAAATCTACAAATGGAAAAGCGTTGC
CGGCAAGACGATGAGGAATGGGACGGAATGCTCGAAGCTCTTGGCTACAG
TAACATCCGAAATTCCGAAGCGGTAAGGAAACTGGTGGAGAAAACCGCTT
TTGTGTTGCATCGACCGAACCAACCAACAAGCACTAGTGCGGTATGCTGG
TATGTCGTTTGCACGATGAGGGGAAAGGTCATTGTGGAAGTGGCTCTATC
AGGAGCAGCTGGAACAGACATAAGAGAGTGGCGCGTGACGGGATGCAAGC
GGCTAAAAAAGGCAGACATTGATGCCTCAGTAATTGCTGCATGGTTTCTT
TCGTCCACGGAAGAGCAAACATTCCAAGTTATTCCGCATGCAGAACTTAA
ATGGGTGTGGAAGAACACCCCCACCCTACTTACAACTGTACGCGCTCTGC
TCTCCCGTATTGGGTGGTCATAA

protein sequence of Ggra3049.t1

>Ggra3049.t1 ID=Ggra3049.t1|Name=Ggra3049.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MQLLLQCDAILLNKASVFQSHQVTITQDGSGDDLWSSMRVKMAALHDKDS
VEMSSHFFYLLYGLSCDINDTVGNVGGLLGTSYRCAASDQFEKTVQSVIK
RGLSSLLDCDDPTGAAEVFLNDLQHRGPSRSLPSHAEINVMYIAVSYRYV
YGNGLTADMWRKAVVTMTQIGQRLGYGHIRIWVDKLSITEGMGWSAVGFL
PYLIFPTFVHPNARGDSNRLWIELEKLAASLGPGILTEDTTEDDVMHHLA
ISRSPAECLLSFAEVLVSGCLDQIKVKHEEDRLRMKQWAKALLTTSNVSQ
MFTIPRYDLEGRGDTRHDASMLCLFDDDLMDIYAVRAYIDHTNLQMEKRC
RQDDEEWDGMLEALGYSNIRNSEAVRKLVEKTAFVLHRPNQPTSTSAVCW
YVVCTMRGKVIVEVALSGAAGTDIREWRVTGCKRLKKADIDASVIAAWFL
SSTEEQTFQVIPHAELKWVWKNTPTLLTTVRALLSRIGWS*

mRNA from alignment at tig00000094_pilon:17122..18594+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3049.t1 ID=Ggra3049.t1|Name=Ggra3049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000094_pilon:17122..18594+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTTTATTACAATGCGATGCCATTCTCCTCAACAAGGCTTCGGT
ATTCCAGTCGCATCAAGTTACGATCACACAAGACGGCTCTGGGGACGATC
TATGGAGCTCCATGAGGGTTAAAATGGCGGCGCTGCATGACAAGGACAGT
GTGGAAATGAGCTCTCATTTCTTTTATCTTCTCTACGGTCTATCGTGTGA
CATCAACGACACTGTCGGTAACGTGGGTGGTCTACTTGGTACGTCGTATA
GGTGTGCCGCATCTGATCAGTTTGAGAAGACTGTCCAAAGTGTCATCAAG
AGAGGACTATCTTCGTTACTAGATTGCGACGACCCCACAGGGGCTGCGGA
GGTATTTTTGAACGACTTACAGCACCGAGGCCCGAGTCGCAGCCTGCCGT
CACATGCAGAAATCAACGTTATGTACATTGCTGTGTCGTACAGATATGTA
TACGGGAACGGCCTTACTGCGGACATGTGGAGAAAAGCTGTCGTAACGAT
GACGCAGATAGGCCAAAGATTAGGGTATGGCCACATCCGAATATGGGTTG
ACAAGCTCTCGATCACGGAAGGCATGGGATGGTCGGCTGTTGGATTCCTG
CCGTATCTCATTTTTCCAACGTTTGTGCATCCAAATGCACGCGGCGATTC
GAACAGATTATGGATCGAACTTGAGAAGCTGGCGGCTTCGCTAGGACCAG
GAATTCTGACCGAAGACACCACTGAAGATGATGTTATGCATCACTTGGCA
ATAAGCAGATCACCAGCGGAGTGCTTGCTGTCATTCGCGGAGGTGCTCGT
CAGCGGATGTCTCGACCAGATTAAAGTGAAGCATGAGGAAGACAGACTCC
GCATGAAACAATGGGCGAAGGCATTGCTCACGACATCGAACGTGAGTCAA
ATGTTCACGATTCCTAGATACGATTTGGAGGGTAGAGGCGACACAAGACA
TGACGCTTCAATGCTCTGCCTGTTCGACGATGATCTCATGGACATTTACG
CAGTACGAGCATATATTGACCATACAAATCTACAAATGGAAAAGCGTTGC
CGGCAAGACGATGAGGAATGGGACGGAATGCTCGAAGCTCTTGGCTACAG
TAACATCCGAAATTCCGAAGCGGTAAGGAAACTGGTGGAGAAAACCGCTT
TTGTGTTGCATCGACCGAACCAACCAACAAGCACTAGTGCGGTATGCTGG
TATGTCGTTTGCACGATGAGGGGAAAGGTCATTGTGGAAGTGGCTCTATC
AGGAGCAGCTGGAACAGACATAAGAGAGTGGCGCGTGACGGGATGCAAGC
GGCTAAAAAAGGCAGACATTGATGCCTCAGTAATTGCTGCATGGTTTCTT
TCGTCCACGGAAGAGCAAACATTCCAAGTTATTCCGCATGCAGAACTTAA
ATGGGTGTGGAAGAACACCCCCACCCTACTTACAACTGTACGCGCTCTGC
TCTCCCGTATTGGGTGGTCATAA

Coding sequence (CDS) from alignment at tig00000094_pilon:17122..18594+

>Ggra3049.t1 ID=Ggra3049.t1|Name=Ggra3049.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000094_pilon:17122..18594+ (Gracilaria gracilis GNS1m male)
ATGCAGCTTTTATTACAATGCGATGCCATTCTCCTCAACAAGGCTTCGGT
ATTCCAGTCGCATCAAGTTACGATCACACAAGACGGCTCTGGGGACGATC
TATGGAGCTCCATGAGGGTTAAAATGGCGGCGCTGCATGACAAGGACAGT
GTGGAAATGAGCTCTCATTTCTTTTATCTTCTCTACGGTCTATCGTGTGA
CATCAACGACACTGTCGGTAACGTGGGTGGTCTACTTGGTACGTCGTATA
GGTGTGCCGCATCTGATCAGTTTGAGAAGACTGTCCAAAGTGTCATCAAG
AGAGGACTATCTTCGTTACTAGATTGCGACGACCCCACAGGGGCTGCGGA
GGTATTTTTGAACGACTTACAGCACCGAGGCCCGAGTCGCAGCCTGCCGT
CACATGCAGAAATCAACGTTATGTACATTGCTGTGTCGTACAGATATGTA
TACGGGAACGGCCTTACTGCGGACATGTGGAGAAAAGCTGTCGTAACGAT
GACGCAGATAGGCCAAAGATTAGGGTATGGCCACATCCGAATATGGGTTG
ACAAGCTCTCGATCACGGAAGGCATGGGATGGTCGGCTGTTGGATTCCTG
CCGTATCTCATTTTTCCAACGTTTGTGCATCCAAATGCACGCGGCGATTC
GAACAGATTATGGATCGAACTTGAGAAGCTGGCGGCTTCGCTAGGACCAG
GAATTCTGACCGAAGACACCACTGAAGATGATGTTATGCATCACTTGGCA
ATAAGCAGATCACCAGCGGAGTGCTTGCTGTCATTCGCGGAGGTGCTCGT
CAGCGGATGTCTCGACCAGATTAAAGTGAAGCATGAGGAAGACAGACTCC
GCATGAAACAATGGGCGAAGGCATTGCTCACGACATCGAACGTGAGTCAA
ATGTTCACGATTCCTAGATACGATTTGGAGGGTAGAGGCGACACAAGACA
TGACGCTTCAATGCTCTGCCTGTTCGACGATGATCTCATGGACATTTACG
CAGTACGAGCATATATTGACCATACAAATCTACAAATGGAAAAGCGTTGC
CGGCAAGACGATGAGGAATGGGACGGAATGCTCGAAGCTCTTGGCTACAG
TAACATCCGAAATTCCGAAGCGGTAAGGAAACTGGTGGAGAAAACCGCTT
TTGTGTTGCATCGACCGAACCAACCAACAAGCACTAGTGCGGTATGCTGG
TATGTCGTTTGCACGATGAGGGGAAAGGTCATTGTGGAAGTGGCTCTATC
AGGAGCAGCTGGAACAGACATAAGAGAGTGGCGCGTGACGGGATGCAAGC
GGCTAAAAAAGGCAGACATTGATGCCTCAGTAATTGCTGCATGGTTTCTT
TCGTCCACGGAAGAGCAAACATTCCAAGTTATTCCGCATGCAGAACTTAA
ATGGGTGTGGAAGAACACCCCCACCCTACTTACAACTGTACGCGCTCTGC
TCTCCCGTATTGGGTGGTCATAA