Ggra3039.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3039.t2
Unique NameGgra3039.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:1023106..1023525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3039Ggra3039Gracilaria gracilis GNS1m malegenetig00000858_pilon 1023106..1025808 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3039.t2.stop1Ggra3039.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 1023106..1023108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3039.t2.CDS1Ggra3039.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 1023106..1023525 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3039.t2.exon1Ggra3039.t2.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 1023106..1023525 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3039.t2.start1Ggra3039.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 1023523..1023525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3039.t2Ggra3039.t2Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 1023106..1023525 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3039.t2 ID=Ggra3039.t2|Name=Ggra3039.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=140bp
MSSDSDMENVDKIVKILEKEGIEHKQIYANEDIEAFAEELYAWMSDTAGD
VKSAHVELLRGRLMENVRLKQLEHVSENVRLLRKFAESESLTGWRRSVNT
LVEEVREETRRRHGLDLTLPPLFSDLNTEAPLIINTQSK*
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spliced messenger RNA

>Ggra3039.t2 ID=Ggra3039.t2|Name=Ggra3039.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000858_pilon:1023106..1023525- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCGATAGCGACATGGAGAATGTGGATAAGATAGTGAAGATACT
GGAGAAAGAAGGAATTGAACACAAGCAAATCTACGCAAACGAAGACATTG
AAGCGTTCGCTGAGGAACTGTATGCATGGATGAGTGACACAGCCGGCGAT
GTCAAGAGTGCTCACGTGGAGCTTCTAAGGGGACGACTAATGGAGAATGT
TCGTCTGAAACAACTGGAACATGTGAGTGAGAACGTGCGACTCCTAAGAA
AATTTGCAGAATCCGAAAGTCTAACAGGGTGGCGTCGCAGCGTAAATACA
TTAGTAGAAGAAGTGCGAGAAGAAACGCGCCGGCGGCATGGTCTAGATCT
GACTCTTCCTCCGTTGTTCTCAGACTTGAACACAGAAGCGCCGTTGATAA
TAAACACACAAAGCAAGTAA
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protein sequence of Ggra3039.t2

>Ggra3039.t2 ID=Ggra3039.t2|Name=Ggra3039.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=140bp
MSSDSDMENVDKIVKILEKEGIEHKQIYANEDIEAFAEELYAWMSDTAGD
VKSAHVELLRGRLMENVRLKQLEHVSENVRLLRKFAESESLTGWRRSVNT
LVEEVREETRRRHGLDLTLPPLFSDLNTEAPLIINTQSK*
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mRNA from alignment at tig00000858_pilon:1023106..1023525-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3039.t2 ID=Ggra3039.t2|Name=Ggra3039.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000858_pilon:1023106..1023525- (Gracilaria gracilis GNS1m male)
ATGAGCAGCGATAGCGACATGGAGAATGTGGATAAGATAGTGAAGATACT
GGAGAAAGAAGGAATTGAACACAAGCAAATCTACGCAAACGAAGACATTG
AAGCGTTCGCTGAGGAACTGTATGCATGGATGAGTGACACAGCCGGCGAT
GTCAAGAGTGCTCACGTGGAGCTTCTAAGGGGACGACTAATGGAGAATGT
TCGTCTGAAACAACTGGAACATGTGAGTGAGAACGTGCGACTCCTAAGAA
AATTTGCAGAATCCGAAAGTCTAACAGGGTGGCGTCGCAGCGTAAATACA
TTAGTAGAAGAAGTGCGAGAAGAAACGCGCCGGCGGCATGGTCTAGATCT
GACTCTTCCTCCGTTGTTCTCAGACTTGAACACAGAAGCGCCGTTGATAA
TAAACACACAAAGCAAGTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:1023106..1023525-

>Ggra3039.t2 ID=Ggra3039.t2|Name=Ggra3039.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00000858_pilon:1023106..1023525- (Gracilaria gracilis GNS1m male)
ATGAGCAGCGATAGCGACATGGAGAATGTGGATAAGATAGTGAAGATACT
GGAGAAAGAAGGAATTGAACACAAGCAAATCTACGCAAACGAAGACATTG
AAGCGTTCGCTGAGGAACTGTATGCATGGATGAGTGACACAGCCGGCGAT
GTCAAGAGTGCTCACGTGGAGCTTCTAAGGGGACGACTAATGGAGAATGT
TCGTCTGAAACAACTGGAACATGTGAGTGAGAACGTGCGACTCCTAAGAA
AATTTGCAGAATCCGAAAGTCTAACAGGGTGGCGTCGCAGCGTAAATACA
TTAGTAGAAGAAGTGCGAGAAGAAACGCGCCGGCGGCATGGTCTAGATCT
GACTCTTCCTCCGTTGTTCTCAGACTTGAACACAGAAGCGCCGTTGATAA
TAAACACACAAAGCAAGTAA
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