Ggra3029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3029.t1
Unique Name	Ggra3029.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	524

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:926434..928005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3029	Ggra3029	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 926434..928005 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3029.t1.start1	Ggra3029.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 926434..926436 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3029.t1.CDS1	Ggra3029.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 926434..928005 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3029.t1.exon1	Ggra3029.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 926434..928005 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3029.t1.stop1	Ggra3029.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 928003..928005 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3029.t1	Ggra3029.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 926434..928005 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:926434..928005+
coding sequence from alignment at tig00000858_pilon:926434..928005+

mRNA sequence

>Ggra3029.t1 ID=Ggra3029.t1|Name=Ggra3029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MNTYPICSRTYVDRVNLHRHIQKSHPKWRKVGPLESNLRQSSEALQNKIG
DTSGQQPNEDSRENFVLDNGREDMNRSLVCNELEARPTQEVFTFFKDYND
SAKPIYSQINAPVPKSSELHPWCQEVVVHCNTEQLTLGKTGKEVEMILRL
ESHLEEQNRHITNLFGSSHSFVSYVERVRRWTVHEEGWKTVSIETSFGRN
ETGCFRSSLELMTEEVEGAGGGESIQPLVEHKVDNQRKFSAPWDSMMMAR
YAGNAGEHEKIAGIDVYCDGIILSNSGSQSVSTLRVRFENLKGRSNEWHE
VKIAQFVDANGTQPSNLELKREPLQLFQQFLFVALEDVIDASKAGIVLQD
TVLVPRLCMIVADQPQERAFFCLKNASSFKDCSICEMQFKNCPHDSKLDD
SKVVSQKCTTEASPRDVVKTKKYQIMTAKRRLVNAEPTRLLNQEQKESLE
EVRIYLFQHSSHEYPPTLAAIRGLRSFPFLLYSTIAFDTLHVMDLGIYRI
LPDIVGKVLGQDRRCVYSATTSP*

spliced messenger RNA

>Ggra3029.t1 ID=Ggra3029.t1|Name=Ggra3029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000858_pilon:926434..928005+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACATATCCAATCTGTTCACGTACTTATGTTGATAGAGTTAATCT
TCACCGTCACATTCAAAAATCTCATCCCAAGTGGAGGAAGGTTGGCCCAC
TTGAATCCAATTTGAGGCAGTCTTCTGAAGCTCTTCAAAACAAAATTGGG
GACACCTCTGGGCAGCAACCTAATGAAGATTCTAGAGAGAATTTCGTGCT
TGACAATGGGCGCGAGGATATGAACCGGTCACTCGTATGCAACGAATTAG
AAGCACGTCCAACCCAAGAGGTCTTCACATTTTTCAAAGACTACAATGAC
TCAGCCAAGCCCATCTATTCGCAGATAAACGCCCCCGTCCCCAAATCAAG
CGAACTCCATCCGTGGTGTCAAGAAGTTGTGGTGCACTGCAACACAGAAC
AGCTCACACTTGGCAAAACTGGAAAGGAGGTAGAGATGATACTACGACTT
GAGAGTCACCTTGAAGAGCAAAACCGACATATCACAAACCTGTTTGGTTC
TAGCCATTCCTTCGTATCGTATGTGGAGCGTGTGAGGAGGTGGACTGTCC
ACGAAGAAGGATGGAAAACCGTCTCGATTGAGACATCTTTTGGTAGAAAC
GAAACTGGTTGTTTTCGATCTTCTCTAGAACTGATGACTGAAGAAGTTGA
AGGAGCCGGAGGAGGTGAAAGTATTCAACCGCTCGTCGAACACAAAGTAG
ATAATCAGCGAAAGTTTTCCGCTCCATGGGACTCGATGATGATGGCCCGC
TACGCGGGAAATGCAGGCGAGCACGAAAAAATTGCTGGTATCGACGTGTA
TTGCGATGGAATCATCCTTTCAAATTCTGGGTCCCAGAGTGTCAGTACTC
TTCGCGTGCGTTTCGAAAATCTTAAGGGACGTTCGAATGAGTGGCATGAA
GTAAAAATTGCGCAATTCGTAGATGCAAATGGTACACAGCCATCTAATCT
AGAGCTTAAGAGAGAGCCGCTCCAGCTTTTTCAACAATTCTTGTTCGTGG
CTCTCGAAGACGTCATTGATGCTTCAAAGGCGGGTATTGTTCTCCAGGAC
ACCGTACTGGTTCCAAGACTATGCATGATTGTTGCAGACCAGCCGCAAGA
ACGGGCCTTTTTCTGCCTGAAAAATGCCAGCAGTTTCAAAGACTGTTCAA
TTTGCGAGATGCAATTCAAGAACTGTCCACATGATTCCAAACTCGATGAT
TCCAAAGTAGTCAGTCAAAAGTGCACGACGGAAGCCTCACCCCGAGATGT
TGTAAAAACAAAGAAGTACCAAATCATGACGGCAAAGCGGAGACTGGTAA
ACGCAGAACCGACTAGACTTCTTAATCAAGAACAGAAGGAGAGTCTGGAA
GAGGTGAGGATATACTTGTTTCAACATAGTTCTCATGAGTATCCGCCCAC
ATTGGCCGCCATCAGAGGGCTCAGATCTTTTCCATTTCTTCTATACAGCA
CCATCGCATTTGACACATTGCACGTTATGGATCTTGGTATATATCGCATT
CTTCCTGACATAGTTGGGAAAGTGCTCGGCCAGGACCGTAGGTGTGTGTA
TAGTGCGACTACTAGTCCTTAG

protein sequence of Ggra3029.t1

>Ggra3029.t1 ID=Ggra3029.t1|Name=Ggra3029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MNTYPICSRTYVDRVNLHRHIQKSHPKWRKVGPLESNLRQSSEALQNKIG
DTSGQQPNEDSRENFVLDNGREDMNRSLVCNELEARPTQEVFTFFKDYND
SAKPIYSQINAPVPKSSELHPWCQEVVVHCNTEQLTLGKTGKEVEMILRL
ESHLEEQNRHITNLFGSSHSFVSYVERVRRWTVHEEGWKTVSIETSFGRN
ETGCFRSSLELMTEEVEGAGGGESIQPLVEHKVDNQRKFSAPWDSMMMAR
YAGNAGEHEKIAGIDVYCDGIILSNSGSQSVSTLRVRFENLKGRSNEWHE
VKIAQFVDANGTQPSNLELKREPLQLFQQFLFVALEDVIDASKAGIVLQD
TVLVPRLCMIVADQPQERAFFCLKNASSFKDCSICEMQFKNCPHDSKLDD
SKVVSQKCTTEASPRDVVKTKKYQIMTAKRRLVNAEPTRLLNQEQKESLE
EVRIYLFQHSSHEYPPTLAAIRGLRSFPFLLYSTIAFDTLHVMDLGIYRI
LPDIVGKVLGQDRRCVYSATTSP*

mRNA from alignment at tig00000858_pilon:926434..928005+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3029.t1 ID=Ggra3029.t1|Name=Ggra3029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000858_pilon:926434..928005+ (Gracilaria gracilis GNS1m male)
ATGAATACATATCCAATCTGTTCACGTACTTATGTTGATAGAGTTAATCT
TCACCGTCACATTCAAAAATCTCATCCCAAGTGGAGGAAGGTTGGCCCAC
TTGAATCCAATTTGAGGCAGTCTTCTGAAGCTCTTCAAAACAAAATTGGG
GACACCTCTGGGCAGCAACCTAATGAAGATTCTAGAGAGAATTTCGTGCT
TGACAATGGGCGCGAGGATATGAACCGGTCACTCGTATGCAACGAATTAG
AAGCACGTCCAACCCAAGAGGTCTTCACATTTTTCAAAGACTACAATGAC
TCAGCCAAGCCCATCTATTCGCAGATAAACGCCCCCGTCCCCAAATCAAG
CGAACTCCATCCGTGGTGTCAAGAAGTTGTGGTGCACTGCAACACAGAAC
AGCTCACACTTGGCAAAACTGGAAAGGAGGTAGAGATGATACTACGACTT
GAGAGTCACCTTGAAGAGCAAAACCGACATATCACAAACCTGTTTGGTTC
TAGCCATTCCTTCGTATCGTATGTGGAGCGTGTGAGGAGGTGGACTGTCC
ACGAAGAAGGATGGAAAACCGTCTCGATTGAGACATCTTTTGGTAGAAAC
GAAACTGGTTGTTTTCGATCTTCTCTAGAACTGATGACTGAAGAAGTTGA
AGGAGCCGGAGGAGGTGAAAGTATTCAACCGCTCGTCGAACACAAAGTAG
ATAATCAGCGAAAGTTTTCCGCTCCATGGGACTCGATGATGATGGCCCGC
TACGCGGGAAATGCAGGCGAGCACGAAAAAATTGCTGGTATCGACGTGTA
TTGCGATGGAATCATCCTTTCAAATTCTGGGTCCCAGAGTGTCAGTACTC
TTCGCGTGCGTTTCGAAAATCTTAAGGGACGTTCGAATGAGTGGCATGAA
GTAAAAATTGCGCAATTCGTAGATGCAAATGGTACACAGCCATCTAATCT
AGAGCTTAAGAGAGAGCCGCTCCAGCTTTTTCAACAATTCTTGTTCGTGG
CTCTCGAAGACGTCATTGATGCTTCAAAGGCGGGTATTGTTCTCCAGGAC
ACCGTACTGGTTCCAAGACTATGCATGATTGTTGCAGACCAGCCGCAAGA
ACGGGCCTTTTTCTGCCTGAAAAATGCCAGCAGTTTCAAAGACTGTTCAA
TTTGCGAGATGCAATTCAAGAACTGTCCACATGATTCCAAACTCGATGAT
TCCAAAGTAGTCAGTCAAAAGTGCACGACGGAAGCCTCACCCCGAGATGT
TGTAAAAACAAAGAAGTACCAAATCATGACGGCAAAGCGGAGACTGGTAA
ACGCAGAACCGACTAGACTTCTTAATCAAGAACAGAAGGAGAGTCTGGAA
GAGGTGAGGATATACTTGTTTCAACATAGTTCTCATGAGTATCCGCCCAC
ATTGGCCGCCATCAGAGGGCTCAGATCTTTTCCATTTCTTCTATACAGCA
CCATCGCATTTGACACATTGCACGTTATGGATCTTGGTATATATCGCATT
CTTCCTGACATAGTTGGGAAAGTGCTCGGCCAGGACCGTAGGTGTGTGTA
TAGTGCGACTACTAGTCCTTAG

Coding sequence (CDS) from alignment at tig00000858_pilon:926434..928005+

>Ggra3029.t1 ID=Ggra3029.t1|Name=Ggra3029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000858_pilon:926434..928005+ (Gracilaria gracilis GNS1m male)
ATGAATACATATCCAATCTGTTCACGTACTTATGTTGATAGAGTTAATCT
TCACCGTCACATTCAAAAATCTCATCCCAAGTGGAGGAAGGTTGGCCCAC
TTGAATCCAATTTGAGGCAGTCTTCTGAAGCTCTTCAAAACAAAATTGGG
GACACCTCTGGGCAGCAACCTAATGAAGATTCTAGAGAGAATTTCGTGCT
TGACAATGGGCGCGAGGATATGAACCGGTCACTCGTATGCAACGAATTAG
AAGCACGTCCAACCCAAGAGGTCTTCACATTTTTCAAAGACTACAATGAC
TCAGCCAAGCCCATCTATTCGCAGATAAACGCCCCCGTCCCCAAATCAAG
CGAACTCCATCCGTGGTGTCAAGAAGTTGTGGTGCACTGCAACACAGAAC
AGCTCACACTTGGCAAAACTGGAAAGGAGGTAGAGATGATACTACGACTT
GAGAGTCACCTTGAAGAGCAAAACCGACATATCACAAACCTGTTTGGTTC
TAGCCATTCCTTCGTATCGTATGTGGAGCGTGTGAGGAGGTGGACTGTCC
ACGAAGAAGGATGGAAAACCGTCTCGATTGAGACATCTTTTGGTAGAAAC
GAAACTGGTTGTTTTCGATCTTCTCTAGAACTGATGACTGAAGAAGTTGA
AGGAGCCGGAGGAGGTGAAAGTATTCAACCGCTCGTCGAACACAAAGTAG
ATAATCAGCGAAAGTTTTCCGCTCCATGGGACTCGATGATGATGGCCCGC
TACGCGGGAAATGCAGGCGAGCACGAAAAAATTGCTGGTATCGACGTGTA
TTGCGATGGAATCATCCTTTCAAATTCTGGGTCCCAGAGTGTCAGTACTC
TTCGCGTGCGTTTCGAAAATCTTAAGGGACGTTCGAATGAGTGGCATGAA
GTAAAAATTGCGCAATTCGTAGATGCAAATGGTACACAGCCATCTAATCT
AGAGCTTAAGAGAGAGCCGCTCCAGCTTTTTCAACAATTCTTGTTCGTGG
CTCTCGAAGACGTCATTGATGCTTCAAAGGCGGGTATTGTTCTCCAGGAC
ACCGTACTGGTTCCAAGACTATGCATGATTGTTGCAGACCAGCCGCAAGA
ACGGGCCTTTTTCTGCCTGAAAAATGCCAGCAGTTTCAAAGACTGTTCAA
TTTGCGAGATGCAATTCAAGAACTGTCCACATGATTCCAAACTCGATGAT
TCCAAAGTAGTCAGTCAAAAGTGCACGACGGAAGCCTCACCCCGAGATGT
TGTAAAAACAAAGAAGTACCAAATCATGACGGCAAAGCGGAGACTGGTAA
ACGCAGAACCGACTAGACTTCTTAATCAAGAACAGAAGGAGAGTCTGGAA
GAGGTGAGGATATACTTGTTTCAACATAGTTCTCATGAGTATCCGCCCAC
ATTGGCCGCCATCAGAGGGCTCAGATCTTTTCCATTTCTTCTATACAGCA
CCATCGCATTTGACACATTGCACGTTATGGATCTTGGTATATATCGCATT
CTTCCTGACATAGTTGGGAAAGTGCTCGGCCAGGACCGTAGGTGTGTGTA
TAGTGCGACTACTAGTCCTTAG