Ggra3016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3016.t1
Unique Name	Ggra3016.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:870011..871330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX34511
Max annot lvl	2759\|Eukaryota
Evalue	5.13e-52
EggNOG OGs	28ITH@1\|root,2QR4V@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3016	Ggra3016	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 870011..871330 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3016.t1.start1	Ggra3016.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 870011..870013 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3016.t1.CDS1	Ggra3016.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 870011..871330 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3016.t1.exon1	Ggra3016.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 870011..871330 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3016.t1.stop1	Ggra3016.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 871328..871330 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3016.t1	Ggra3016.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 870011..871330 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:870011..871330+
coding sequence from alignment at tig00000858_pilon:870011..871330+

mRNA sequence

>Ggra3016.t1 ID=Ggra3016.t1|Name=Ggra3016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=440bp
MASQKGHRPSSLRLRMARLSDSVINALTIKVSKERAAGLPTSSSLLASRA
IIFFLFASLTIMALHTLMGIASLPQNHAKTDSQPLVPPVKSLSVHDYPAV
LVSESEAFVPKSATTEKKEGDISLVTPRIEDEMTKSPNFDAAEEPMARMI
VITMDREKSLRRLFKSLELANYGEDHVDLDIWIDRPKEGSIHEGVLQASR
EVDWKYGTKVIHKRAVNAGLYQQWIYTWNITEETTEFAVILEDDLEVSPA
FYQWLRVARAAYAQDADVGAFTLQRPTLRPKQVKGVASGPLKIPEEHTVF
KYKLLGTWGFAPQRDQWVEFRNWFEEKRARNEKPYVRGLMTTAWYKSQEV
NGFAPTMWSQWWIKFVEEKGYFTVTANIPDGTTLAANWREAGLHYSKHKP
TTDFPIFRGNEEQFVMPDDPPILVDWDGRIISSSSTSNT*

spliced messenger RNA

>Ggra3016.t1 ID=Ggra3016.t1|Name=Ggra3016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000858_pilon:870011..871330+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGTCAGAAAGGGCATCGGCCTTCCTCGCTACGACTGCGAATGGC
ACGTCTATCGGATTCTGTAATCAACGCTCTTACTATCAAGGTCTCGAAGG
AAAGGGCAGCTGGTCTACCAACTTCCAGCTCTCTGTTGGCATCGCGCGCA
ATAATCTTTTTCTTGTTTGCATCACTGACTATAATGGCTCTTCATACGCT
GATGGGTATCGCTTCCCTACCACAGAATCATGCTAAGACCGATTCACAGC
CCTTGGTTCCACCAGTCAAATCTCTTAGTGTGCATGATTACCCGGCCGTT
TTAGTTTCTGAAAGTGAAGCTTTTGTACCGAAATCGGCGACGACGGAGAA
GAAGGAGGGCGACATCAGTCTCGTCACTCCCAGAATTGAGGATGAAATGA
CAAAGTCTCCAAATTTCGATGCAGCTGAGGAACCTATGGCTCGAATGATT
GTCATAACAATGGATCGAGAAAAATCACTTCGACGTCTGTTCAAATCTCT
GGAACTGGCAAACTACGGGGAAGATCACGTGGACTTGGATATCTGGATAG
ATAGACCGAAAGAAGGTAGTATTCACGAAGGCGTGTTGCAGGCCAGCCGG
GAAGTTGATTGGAAGTATGGTACAAAAGTTATTCATAAACGGGCTGTCAA
TGCAGGCTTGTACCAGCAGTGGATATACACATGGAATATCACCGAAGAAA
CAACAGAGTTTGCGGTGATCCTTGAGGATGATCTCGAGGTATCACCAGCC
TTCTATCAATGGCTTCGGGTCGCTCGAGCTGCATACGCGCAGGACGCAGA
TGTCGGTGCATTCACATTACAGAGACCTACTCTTCGACCAAAACAAGTCA
AAGGTGTGGCAAGTGGACCTTTGAAGATCCCAGAGGAACATACTGTGTTC
AAATACAAACTCCTTGGGACCTGGGGATTTGCTCCTCAACGAGACCAGTG
GGTGGAGTTCAGAAATTGGTTCGAAGAAAAGCGGGCCCGCAACGAGAAAC
CATATGTAAGGGGTCTCATGACTACTGCCTGGTACAAGAGTCAAGAAGTG
AACGGTTTCGCGCCTACAATGTGGAGTCAGTGGTGGATCAAATTCGTAGA
AGAAAAGGGGTATTTCACAGTGACTGCTAATATTCCCGATGGAACTACTT
TAGCCGCAAACTGGAGAGAAGCAGGCCTACATTACTCGAAGCACAAACCA
ACAACGGACTTCCCCATATTCCGAGGGAATGAGGAACAGTTCGTAATGCC
TGATGATCCACCTATCCTTGTAGACTGGGACGGCCGCATAATTTCGTCAA
GTTCTACGAGCAATACCTGA

protein sequence of Ggra3016.t1

>Ggra3016.t1 ID=Ggra3016.t1|Name=Ggra3016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=440bp
MASQKGHRPSSLRLRMARLSDSVINALTIKVSKERAAGLPTSSSLLASRA
IIFFLFASLTIMALHTLMGIASLPQNHAKTDSQPLVPPVKSLSVHDYPAV
LVSESEAFVPKSATTEKKEGDISLVTPRIEDEMTKSPNFDAAEEPMARMI
VITMDREKSLRRLFKSLELANYGEDHVDLDIWIDRPKEGSIHEGVLQASR
EVDWKYGTKVIHKRAVNAGLYQQWIYTWNITEETTEFAVILEDDLEVSPA
FYQWLRVARAAYAQDADVGAFTLQRPTLRPKQVKGVASGPLKIPEEHTVF
KYKLLGTWGFAPQRDQWVEFRNWFEEKRARNEKPYVRGLMTTAWYKSQEV
NGFAPTMWSQWWIKFVEEKGYFTVTANIPDGTTLAANWREAGLHYSKHKP
TTDFPIFRGNEEQFVMPDDPPILVDWDGRIISSSSTSNT*

mRNA from alignment at tig00000858_pilon:870011..871330+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3016.t1 ID=Ggra3016.t1|Name=Ggra3016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000858_pilon:870011..871330+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTCAGAAAGGGCATCGGCCTTCCTCGCTACGACTGCGAATGGC
ACGTCTATCGGATTCTGTAATCAACGCTCTTACTATCAAGGTCTCGAAGG
AAAGGGCAGCTGGTCTACCAACTTCCAGCTCTCTGTTGGCATCGCGCGCA
ATAATCTTTTTCTTGTTTGCATCACTGACTATAATGGCTCTTCATACGCT
GATGGGTATCGCTTCCCTACCACAGAATCATGCTAAGACCGATTCACAGC
CCTTGGTTCCACCAGTCAAATCTCTTAGTGTGCATGATTACCCGGCCGTT
TTAGTTTCTGAAAGTGAAGCTTTTGTACCGAAATCGGCGACGACGGAGAA
GAAGGAGGGCGACATCAGTCTCGTCACTCCCAGAATTGAGGATGAAATGA
CAAAGTCTCCAAATTTCGATGCAGCTGAGGAACCTATGGCTCGAATGATT
GTCATAACAATGGATCGAGAAAAATCACTTCGACGTCTGTTCAAATCTCT
GGAACTGGCAAACTACGGGGAAGATCACGTGGACTTGGATATCTGGATAG
ATAGACCGAAAGAAGGTAGTATTCACGAAGGCGTGTTGCAGGCCAGCCGG
GAAGTTGATTGGAAGTATGGTACAAAAGTTATTCATAAACGGGCTGTCAA
TGCAGGCTTGTACCAGCAGTGGATATACACATGGAATATCACCGAAGAAA
CAACAGAGTTTGCGGTGATCCTTGAGGATGATCTCGAGGTATCACCAGCC
TTCTATCAATGGCTTCGGGTCGCTCGAGCTGCATACGCGCAGGACGCAGA
TGTCGGTGCATTCACATTACAGAGACCTACTCTTCGACCAAAACAAGTCA
AAGGTGTGGCAAGTGGACCTTTGAAGATCCCAGAGGAACATACTGTGTTC
AAATACAAACTCCTTGGGACCTGGGGATTTGCTCCTCAACGAGACCAGTG
GGTGGAGTTCAGAAATTGGTTCGAAGAAAAGCGGGCCCGCAACGAGAAAC
CATATGTAAGGGGTCTCATGACTACTGCCTGGTACAAGAGTCAAGAAGTG
AACGGTTTCGCGCCTACAATGTGGAGTCAGTGGTGGATCAAATTCGTAGA
AGAAAAGGGGTATTTCACAGTGACTGCTAATATTCCCGATGGAACTACTT
TAGCCGCAAACTGGAGAGAAGCAGGCCTACATTACTCGAAGCACAAACCA
ACAACGGACTTCCCCATATTCCGAGGGAATGAGGAACAGTTCGTAATGCC
TGATGATCCACCTATCCTTGTAGACTGGGACGGCCGCATAATTTCGTCAA
GTTCTACGAGCAATACCTGA

Coding sequence (CDS) from alignment at tig00000858_pilon:870011..871330+

>Ggra3016.t1 ID=Ggra3016.t1|Name=Ggra3016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000858_pilon:870011..871330+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTCAGAAAGGGCATCGGCCTTCCTCGCTACGACTGCGAATGGC
ACGTCTATCGGATTCTGTAATCAACGCTCTTACTATCAAGGTCTCGAAGG
AAAGGGCAGCTGGTCTACCAACTTCCAGCTCTCTGTTGGCATCGCGCGCA
ATAATCTTTTTCTTGTTTGCATCACTGACTATAATGGCTCTTCATACGCT
GATGGGTATCGCTTCCCTACCACAGAATCATGCTAAGACCGATTCACAGC
CCTTGGTTCCACCAGTCAAATCTCTTAGTGTGCATGATTACCCGGCCGTT
TTAGTTTCTGAAAGTGAAGCTTTTGTACCGAAATCGGCGACGACGGAGAA
GAAGGAGGGCGACATCAGTCTCGTCACTCCCAGAATTGAGGATGAAATGA
CAAAGTCTCCAAATTTCGATGCAGCTGAGGAACCTATGGCTCGAATGATT
GTCATAACAATGGATCGAGAAAAATCACTTCGACGTCTGTTCAAATCTCT
GGAACTGGCAAACTACGGGGAAGATCACGTGGACTTGGATATCTGGATAG
ATAGACCGAAAGAAGGTAGTATTCACGAAGGCGTGTTGCAGGCCAGCCGG
GAAGTTGATTGGAAGTATGGTACAAAAGTTATTCATAAACGGGCTGTCAA
TGCAGGCTTGTACCAGCAGTGGATATACACATGGAATATCACCGAAGAAA
CAACAGAGTTTGCGGTGATCCTTGAGGATGATCTCGAGGTATCACCAGCC
TTCTATCAATGGCTTCGGGTCGCTCGAGCTGCATACGCGCAGGACGCAGA
TGTCGGTGCATTCACATTACAGAGACCTACTCTTCGACCAAAACAAGTCA
AAGGTGTGGCAAGTGGACCTTTGAAGATCCCAGAGGAACATACTGTGTTC
AAATACAAACTCCTTGGGACCTGGGGATTTGCTCCTCAACGAGACCAGTG
GGTGGAGTTCAGAAATTGGTTCGAAGAAAAGCGGGCCCGCAACGAGAAAC
CATATGTAAGGGGTCTCATGACTACTGCCTGGTACAAGAGTCAAGAAGTG
AACGGTTTCGCGCCTACAATGTGGAGTCAGTGGTGGATCAAATTCGTAGA
AGAAAAGGGGTATTTCACAGTGACTGCTAATATTCCCGATGGAACTACTT
TAGCCGCAAACTGGAGAGAAGCAGGCCTACATTACTCGAAGCACAAACCA
ACAACGGACTTCCCCATATTCCGAGGGAATGAGGAACAGTTCGTAATGCC
TGATGATCCACCTATCCTTGTAGACTGGGACGGCCGCATAATTTCGTCAA
GTTCTACGAGCAATACCTGA