Ggra3015.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3015.t1
Unique NameGgra3015.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:868489..869382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc03g033850.2.1
PFAMsSyntaxin-18_N
Max annot lvl35493|Streptophyta
KEGG koko:K08492
KEGG Pathwayko04130,ko04145,map04130,map04145
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006888,GO:0006890,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031201,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0098796
Evalue7.21e-18
EggNOG OGsKOG3894@1|root,KOG3894@2759|Eukaryota,37NQG@33090|Viridiplantae,3GDIY@35493|Streptophyta,44FZH@71274|asterids
DescriptionSyntaxin-81-like
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3015Ggra3015Gracilaria gracilis GNS1m malegenetig00000858_pilon 868489..869382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3015.t1.start1Ggra3015.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 868489..868491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3015.t1.CDS1Ggra3015.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 868489..869382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3015.t1.exon1Ggra3015.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 868489..869382 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3015.t1.stop1Ggra3015.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 869380..869382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3015.t1Ggra3015.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 868489..869382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3015.t1 ID=Ggra3015.t1|Name=Ggra3015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MIIPVDRTSELLSALAAHHQLKDGAVPIKQSNEVEPHAFTKLAIRLTSQI
LDMQAFIEKCKVRYLDFSARGMKDVERDQVDSAVAQFLRTAMNQIEKLKE
TAVVELRKSPGASFPAHKLGVVVILNENLQNVCRLSETLRGARIKDAIAA
KERAKVQYDPIIAQEMARERKRAEEEEQDIDQIAPLEQQFARENATLVSE
LVETREIVKEAERTVFEIANLNHVFATKVLEQAREIETLYNLAVEATLHV
DRGNRELRKMKQQRPVLKYGLAMLALLLAFALLFMEWMSRRRSLFFF*
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spliced messenger RNA

>Ggra3015.t1 ID=Ggra3015.t1|Name=Ggra3015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:868489..869382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATTCCCGTCGATCGAACCAGCGAGCTACTCTCTGCTCTTGCTGC
GCATCATCAACTAAAAGATGGCGCCGTACCTATAAAGCAGAGCAACGAAG
TGGAACCACACGCGTTTACAAAGCTTGCCATTCGACTCACGTCTCAAATC
CTAGACATGCAGGCATTCATTGAAAAATGCAAAGTGCGGTACTTGGATTT
CTCTGCACGCGGTATGAAGGATGTTGAGCGAGATCAGGTTGATTCTGCAG
TCGCACAGTTCTTGCGCACGGCGATGAATCAAATCGAAAAGCTCAAAGAA
ACGGCTGTTGTGGAACTGCGAAAAAGCCCAGGTGCATCATTTCCGGCACA
CAAACTGGGCGTCGTTGTTATTCTGAACGAGAATTTACAAAACGTATGCC
GACTTTCAGAGACGCTTCGAGGCGCGCGAATTAAGGACGCGATTGCGGCT
AAGGAACGTGCTAAAGTACAATACGATCCGATCATAGCGCAGGAAATGGC
CCGCGAGagaaaaagagcagaagaggaagaacaagaCATCGACCAAATTG
CCCCCCTGGAACAACAATTTGCTCGAGAGAACGCCACATTGGTAAGTGAA
CTGGTAGAAACGAGGGAGATAGTTAAAGAGGCGGAACGGACTGTTTTCGA
GATCGCCAATTTGAATCACGTCTTCGCAACCAAAGTGTTGGAGCAAGCCA
GAGAGATCGAGACGTTGTATAATCTCGCTGTTGAAGCCACACTCCACGTC
GACAGGGGCAATCGAGAACTCAGAAAAATGAAACAACAGCGACCAGTTTT
GAAGTACGGGCTGGCCATGTTAGCATTATTGCTGGCGTTTGCGTTATTAT
TTATGGAATGGATGAGCCGACGACGGTCTTTGTTTTTCTTCTAA
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protein sequence of Ggra3015.t1

>Ggra3015.t1 ID=Ggra3015.t1|Name=Ggra3015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MIIPVDRTSELLSALAAHHQLKDGAVPIKQSNEVEPHAFTKLAIRLTSQI
LDMQAFIEKCKVRYLDFSARGMKDVERDQVDSAVAQFLRTAMNQIEKLKE
TAVVELRKSPGASFPAHKLGVVVILNENLQNVCRLSETLRGARIKDAIAA
KERAKVQYDPIIAQEMARERKRAEEEEQDIDQIAPLEQQFARENATLVSE
LVETREIVKEAERTVFEIANLNHVFATKVLEQAREIETLYNLAVEATLHV
DRGNRELRKMKQQRPVLKYGLAMLALLLAFALLFMEWMSRRRSLFFF*
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mRNA from alignment at tig00000858_pilon:868489..869382+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3015.t1 ID=Ggra3015.t1|Name=Ggra3015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:868489..869382+ (Gracilaria gracilis GNS1m male)
ATGATTATTCCCGTCGATCGAACCAGCGAGCTACTCTCTGCTCTTGCTGC
GCATCATCAACTAAAAGATGGCGCCGTACCTATAAAGCAGAGCAACGAAG
TGGAACCACACGCGTTTACAAAGCTTGCCATTCGACTCACGTCTCAAATC
CTAGACATGCAGGCATTCATTGAAAAATGCAAAGTGCGGTACTTGGATTT
CTCTGCACGCGGTATGAAGGATGTTGAGCGAGATCAGGTTGATTCTGCAG
TCGCACAGTTCTTGCGCACGGCGATGAATCAAATCGAAAAGCTCAAAGAA
ACGGCTGTTGTGGAACTGCGAAAAAGCCCAGGTGCATCATTTCCGGCACA
CAAACTGGGCGTCGTTGTTATTCTGAACGAGAATTTACAAAACGTATGCC
GACTTTCAGAGACGCTTCGAGGCGCGCGAATTAAGGACGCGATTGCGGCT
AAGGAACGTGCTAAAGTACAATACGATCCGATCATAGCGCAGGAAATGGC
CCGCGAGagaaaaagagcagaagaggaagaacaagaCATCGACCAAATTG
CCCCCCTGGAACAACAATTTGCTCGAGAGAACGCCACATTGGTAAGTGAA
CTGGTAGAAACGAGGGAGATAGTTAAAGAGGCGGAACGGACTGTTTTCGA
GATCGCCAATTTGAATCACGTCTTCGCAACCAAAGTGTTGGAGCAAGCCA
GAGAGATCGAGACGTTGTATAATCTCGCTGTTGAAGCCACACTCCACGTC
GACAGGGGCAATCGAGAACTCAGAAAAATGAAACAACAGCGACCAGTTTT
GAAGTACGGGCTGGCCATGTTAGCATTATTGCTGGCGTTTGCGTTATTAT
TTATGGAATGGATGAGCCGACGACGGTCTTTGTTTTTCTTCTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:868489..869382+

>Ggra3015.t1 ID=Ggra3015.t1|Name=Ggra3015.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000858_pilon:868489..869382+ (Gracilaria gracilis GNS1m male)
ATGATTATTCCCGTCGATCGAACCAGCGAGCTACTCTCTGCTCTTGCTGC
GCATCATCAACTAAAAGATGGCGCCGTACCTATAAAGCAGAGCAACGAAG
TGGAACCACACGCGTTTACAAAGCTTGCCATTCGACTCACGTCTCAAATC
CTAGACATGCAGGCATTCATTGAAAAATGCAAAGTGCGGTACTTGGATTT
CTCTGCACGCGGTATGAAGGATGTTGAGCGAGATCAGGTTGATTCTGCAG
TCGCACAGTTCTTGCGCACGGCGATGAATCAAATCGAAAAGCTCAAAGAA
ACGGCTGTTGTGGAACTGCGAAAAAGCCCAGGTGCATCATTTCCGGCACA
CAAACTGGGCGTCGTTGTTATTCTGAACGAGAATTTACAAAACGTATGCC
GACTTTCAGAGACGCTTCGAGGCGCGCGAATTAAGGACGCGATTGCGGCT
AAGGAACGTGCTAAAGTACAATACGATCCGATCATAGCGCAGGAAATGGC
CCGCGAGagaaaaagagcagaagaggaagaacaagaCATCGACCAAATTG
CCCCCCTGGAACAACAATTTGCTCGAGAGAACGCCACATTGGTAAGTGAA
CTGGTAGAAACGAGGGAGATAGTTAAAGAGGCGGAACGGACTGTTTTCGA
GATCGCCAATTTGAATCACGTCTTCGCAACCAAAGTGTTGGAGCAAGCCA
GAGAGATCGAGACGTTGTATAATCTCGCTGTTGAAGCCACACTCCACGTC
GACAGGGGCAATCGAGAACTCAGAAAAATGAAACAACAGCGACCAGTTTT
GAAGTACGGGCTGGCCATGTTAGCATTATTGCTGGCGTTTGCGTTATTAT
TTATGGAATGGATGAGCCGACGACGGTCTTTGTTTTTCTTCTAA
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