Ggra3013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3013.t1
Unique NameGgra3013.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:865437..866381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702684.1
Preferred nameNDUFAF6
PFAMsSQS_PSY
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164,ko:K18163
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200,map04714
KEGG ModuleM00009,M00011,M00032
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031647,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050821,GO:0065003,GO:0065007,GO:0065008,GO:0071840
Evalue2.55e-34
EggNOG OGsCOG1562@1|root,KOG4411@2759|Eukaryota
EC1.2.4.2
Descriptionmitochondrial respiratory chain complex I assembly
COG categoryI
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3013Ggra3013Gracilaria gracilis GNS1m malegenetig00000858_pilon 865437..866381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1Ggra3013.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 865437..866381 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1.start1Ggra3013.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 865437..865439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1.CDS1Ggra3013.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 865437..865608 +
Ggra3013.t1.CDS2Ggra3013.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 865669..866381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1.exon1Ggra3013.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 865437..865608 +
Ggra3013.t1.exon2Ggra3013.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 865669..866381 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1.intron1Ggra3013.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 865609..865668 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3013.t1.stop1Ggra3013.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 866379..866381 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3013.t1 ID=Ggra3013.t1|Name=Ggra3013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MLNANTMPYVATQQNLAYTLALLRNNDNENYLANLLQLRSVSRAHAAIRA
FNIELANIRSNVSNEDLGLLRLQFFRSQFADVLSNPNPNPASPVMDVLAE
AVSSYPQVNFDLLYALIDARATDLSYPNFRSLRELQSFGEQTQGPLIHLH
ALLLGGAPHVENIAKMAGAAVGLSIILRGAPAHAASRLSYMPRNLVERYG
VLQSHLISGEGDAVHVFRTVAKRARRCLKVAQIKSSLLPHPVKQAFWPLI
MSDIYLRRLRKAGDNPFDKRLAQGLRTTYPLSLQMRLLLARLRR*
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spliced messenger RNA

>Ggra3013.t1 ID=Ggra3013.t1|Name=Ggra3013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000858_pilon:865437..866381+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGCAAATACCATGCCGTACGTTGCGACTCAACAGAATCTCGC
CTACACGCTTGCTCTTCTGCGCAACAACGACAATGAAAACTACTTGGCAA
ATCTGCTGCAACTTCGATCTGTTTCAAGAGCCCACGCTGCGATCCGGGCC
TTCAATATTGAACTGGCCAATATTCGTTCCAATGTGTCAAACGAAGATCT
GGGCCTCCTCAGACTGCAGTTCTTCCGCTCTCAGTTCGCAGATGTTCTGT
CAAATCCAAATCCGAACCCTGCCTCTCCGGTTATGGATGTTCTTGCAGAA
GCGGTATCTTCTTATCCCCAGGTCAACTTTGATCTCCTTTACGCCCTTAT
CGACGCCAGAGCGACTGATTTATCGTATCCCAATTTCCGTTCGTTGCGTG
AACTTCAAAGCTTTGGTGAACAAACTCAGGGACCTCTAATTCATCTTCAT
GCCCTTCTTCTTGGTGGAGCCCCCCATGTCGAGAATATTGCAAAAATGGC
TGGTGCGGCTGTGGGACTGTCTATTATCTTGCGTGGCGCACCTGCACATG
CGGCGTCTAGATTATCTTACATGCCAAGAAATCTTGTAGAACGATATGGG
GTCCTACAGTCACACCTTATTTCAGGAGAAGGGGATGCAGTGCATGTGTT
CAGAACTGTGGCTAAAAGGGCAAGGCGTTGTCTGAAAGTGGCACAGATCA
AGAGTAGTTTGCTACCCCATCCAGTGAAGCAAGCATTTTGGCCTTTGATC
ATGAGCGACATCTATTTGCGGCGATTGCGAAAAGCAGGTGATAATCCTTT
CGATAAGCGTTTGGCACAAGGTTTGAGGACAACTTATCCGCTTTCGTTGC
AGATGAGATTACTTCTTGCTCGTTTAAGGAGATGA
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protein sequence of Ggra3013.t1

>Ggra3013.t1 ID=Ggra3013.t1|Name=Ggra3013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MLNANTMPYVATQQNLAYTLALLRNNDNENYLANLLQLRSVSRAHAAIRA
FNIELANIRSNVSNEDLGLLRLQFFRSQFADVLSNPNPNPASPVMDVLAE
AVSSYPQVNFDLLYALIDARATDLSYPNFRSLRELQSFGEQTQGPLIHLH
ALLLGGAPHVENIAKMAGAAVGLSIILRGAPAHAASRLSYMPRNLVERYG
VLQSHLISGEGDAVHVFRTVAKRARRCLKVAQIKSSLLPHPVKQAFWPLI
MSDIYLRRLRKAGDNPFDKRLAQGLRTTYPLSLQMRLLLARLRR*
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mRNA from alignment at tig00000858_pilon:865437..866381+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3013.t1 ID=Ggra3013.t1|Name=Ggra3013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000858_pilon:865437..866381+ (Gracilaria gracilis GNS1m male)
ATGCTCAACGCAAATACCATGCCGTACGTTGCGACTCAACAGAATCTCGC
CTACACGCTTGCTCTTCTGCGCAACAACGACAATGAAAACTACTTGGCAA
ATCTGCTGCAACTTCGATCTGTTTCAAGAGCCCACGCTGCGATCCGGGCC
TTCAATATTGAACTGGCCAATAGTAAGTTGCACCGTAATCGAAAGATCCA
TGTGCAATGTGACTAACCATAGAATATCATAGTTCGTTCCAATGTGTCAA
ACGAAGATCTGGGCCTCCTCAGACTGCAGTTCTTCCGCTCTCAGTTCGCA
GATGTTCTGTCAAATCCAAATCCGAACCCTGCCTCTCCGGTTATGGATGT
TCTTGCAGAAGCGGTATCTTCTTATCCCCAGGTCAACTTTGATCTCCTTT
ACGCCCTTATCGACGCCAGAGCGACTGATTTATCGTATCCCAATTTCCGT
TCGTTGCGTGAACTTCAAAGCTTTGGTGAACAAACTCAGGGACCTCTAAT
TCATCTTCATGCCCTTCTTCTTGGTGGAGCCCCCCATGTCGAGAATATTG
CAAAAATGGCTGGTGCGGCTGTGGGACTGTCTATTATCTTGCGTGGCGCA
CCTGCACATGCGGCGTCTAGATTATCTTACATGCCAAGAAATCTTGTAGA
ACGATATGGGGTCCTACAGTCACACCTTATTTCAGGAGAAGGGGATGCAG
TGCATGTGTTCAGAACTGTGGCTAAAAGGGCAAGGCGTTGTCTGAAAGTG
GCACAGATCAAGAGTAGTTTGCTACCCCATCCAGTGAAGCAAGCATTTTG
GCCTTTGATCATGAGCGACATCTATTTGCGGCGATTGCGAAAAGCAGGTG
ATAATCCTTTCGATAAGCGTTTGGCACAAGGTTTGAGGACAACTTATCCG
CTTTCGTTGCAGATGAGATTACTTCTTGCTCGTTTAAGGAGATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:865437..866381+

>Ggra3013.t1 ID=Ggra3013.t1|Name=Ggra3013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000858_pilon:865437..866381+ (Gracilaria gracilis GNS1m male)
ATGCTCAACGCAAATACCATGCCGTACGTTGCGACTCAACAGAATCTCGC
CTACACGCTTGCTCTTCTGCGCAACAACGACAATGAAAACTACTTGGCAA
ATCTGCTGCAACTTCGATCTGTTTCAAGAGCCCACGCTGCGATCCGGGCC
TTCAATATTGAACTGGCCAATATTCGTTCCAATGTGTCAAACGAAGATCT
GGGCCTCCTCAGACTGCAGTTCTTCCGCTCTCAGTTCGCAGATGTTCTGT
CAAATCCAAATCCGAACCCTGCCTCTCCGGTTATGGATGTTCTTGCAGAA
GCGGTATCTTCTTATCCCCAGGTCAACTTTGATCTCCTTTACGCCCTTAT
CGACGCCAGAGCGACTGATTTATCGTATCCCAATTTCCGTTCGTTGCGTG
AACTTCAAAGCTTTGGTGAACAAACTCAGGGACCTCTAATTCATCTTCAT
GCCCTTCTTCTTGGTGGAGCCCCCCATGTCGAGAATATTGCAAAAATGGC
TGGTGCGGCTGTGGGACTGTCTATTATCTTGCGTGGCGCACCTGCACATG
CGGCGTCTAGATTATCTTACATGCCAAGAAATCTTGTAGAACGATATGGG
GTCCTACAGTCACACCTTATTTCAGGAGAAGGGGATGCAGTGCATGTGTT
CAGAACTGTGGCTAAAAGGGCAAGGCGTTGTCTGAAAGTGGCACAGATCA
AGAGTAGTTTGCTACCCCATCCAGTGAAGCAAGCATTTTGGCCTTTGATC
ATGAGCGACATCTATTTGCGGCGATTGCGAAAAGCAGGTGATAATCCTTT
CGATAAGCGTTTGGCACAAGGTTTGAGGACAACTTATCCGCTTTCGTTGC
AGATGAGATTACTTCTTGCTCGTTTAAGGAGATGA
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