Ggra3011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3011.t1
Unique Name	Ggra3011.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	752

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:860824..863079 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272134.KB731324_gene4813
Preferred name	chlD
PFAMs	Mg_chelatase,VWA_2
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01012
KEGG ko	ko:K03404
KEGG Reaction	R03877
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue	1.29e-255
EggNOG OGs	COG1239@1\|root,COG1240@1\|root,COG1239@2\|Bacteria,COG1240@2\|Bacteria,1G0CI@1117\|Cyanobacteria,1H7BS@1150\|Oscillatoriales
EC	6.6.1.1
Description	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3011	Ggra3011	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 860824..863079 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3011.t1.stop1	Ggra3011.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 860824..860826 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3011.t1.CDS1	Ggra3011.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 860824..863079 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3011.t1.exon1	Ggra3011.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 860824..863079 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3011.t1.start1	Ggra3011.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 863077..863079 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3011.t1	Ggra3011.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 860824..863079 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:860824..863079-
coding sequence from alignment at tig00000858_pilon:860824..863079-

mRNA sequence

>Ggra3011.t1 ID=Ggra3011.t1|Name=Ggra3011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=752bp
MSPSAPLPSPSAFVPSIPLPPRRRRPRNTHHCAPVCTLSAQDPQTNTAFA
TPAQRAAAAAALEQSQNASTLPDRAEQDSSRIFPLAAVVGQDFVKLSLLL
AAVNSRISGVGISGRRGTAKSVMARAIHALLPPIEVVTGSYFNEEPPPPP
DTCEMNDDTPDPNRAVIPAPFVQVPLNVTEDRLIGSVDVEQSVRTGETVF
QPGLLASAHRGVLYIDELNLLDDGLANILVEVISSGVVRIEREGLSVSHP
CRPLVIATYNPEEGLVRPHLLDRLAINLSVDAVPLSMEQRVEAVESATTY
SDDPTSFVTKLHDETDQMSTSIVLAREYLEEVSISNEQVGYLVTEAVRAA
CQGHRAELFALEIAKAAAALDGREKVSADDLKTAVRLAILPRSLVMNDSQ
MEQEMDAPPPPPPPPPQNQDEDIDDELQEEEDEPQDQEQQEEQEEEAPEL
PEEFMFDPEGVVMDPELLEFSKSQKQGKAGGRGLVFSQDRGRYIKAMLPR
GGTQRLAVDATLRAAAPFQKGRRTRATDAGRRKVFVEESDMRVKRLARKA
GALVVFLVDASGSMALNRMNAAKGAAIRLLTEAYQTRDKVSLIPFQGNRA
EVVLPPTKSVTMAKKRLETMPCGGGSPLAHGLMQSVRVGVNAQKSGDIGK
VIIVCISDGRANVPLAISEGEELEEKMSKADLKQETLNIAKQIAAISGID
LLCIDTENKFVSTGMAKEIANNAGGTYHSLPKATDAAVAGVASSAIEAMK
A*

spliced messenger RNA

>Ggra3011.t1 ID=Ggra3011.t1|Name=Ggra3011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2256bp|location=Sequence derived from alignment at tig00000858_pilon:860824..863079- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCGTCGGCCCCTCTTCCGTCCCCATCTGCCTTCGTTCCCTCCAT
CCCGCTCCCTCCCCGTCGCCGCCGACCACGCAACACCCATCACTGCGCCC
CAGTCTGCACTCTCTCCGCTCAAGACCCGCAGACCAACACCGCCTTCGCA
ACTCCTGCGCAGCGTGCTGCCGCCGCCGCCGCTCTCGAACAATCTCAGAA
TGCTTCCACGCTTCCCGATCGCGCGGAGCAAGACTCCTCACGCATCTTCC
CGCTTGCCGCCGTCGTTGGCCAGGACTTCGTCAAGTTGTCGCTACTGCTA
GCCGCCGTCAATTCGCGTATTTCTGGCGTCGGCATCAGTGGGCGCCGCGG
TACGGCTAAATCGGTAATGGCACGCGCCATTCATGCCCTTCTCCCGCCCA
TTGAGGTTGTTACTGGTAGCTATTTCAATGAAGAGCCACCACCACCCCCG
GACACATGTGAAATGAACGATGATACGCCAGATCCAAATCGTGCTGTTAT
TCCGGCACCATTTGTTCAGGTCCCGCTCAATGTCACTGAAGATCGCTTAA
TTGGATCCGTCGACGTTGAACAATCTGTTAGGACGGGCGAGACAGTCTTT
CAACCGGGCCTGCTGGCAAGCGCTCATCGCGGTGTGCTTTATATTGACGA
GCTCAATCTCCTCGATGACGGATTAGCAAACATTCTTGTCGAGGTCATAT
CAAGCGGCGTTGTTCGTATCGAACGTGAGGGCTTGTCCGTATCGCATCCA
TGCCGACCACTCGTTATTGCCACATACAATCCAGAGGAGGGCCTCGTACG
CCCACATTTGCTCGATCGATTGGCAATCAATCTTTCTGTAGATGCCGTCC
CACTCTCTATGGAGCAAAGAGTTGAAGCCGTTGAGTCGGCTACGACTTAC
AGCGATGATCCTACTAGTTTCGTAACAAAGTTGCATGATGAGACTGATCA
AATGTCTACCAGCATTGTGCTTGCACGCGAGTACTTGGAAGAAGTTTCGA
TATCTAACGAACAAGTCGGCTATCTTGTTACAGAGGCCGTACGGGCAGCG
TGTCAGGGTCATCGCGCCGAACTATTCGCCTTGGAGATTGCGAAAGCAGC
TGCGGCTTTAGATGGGAGAGAAAAGGTTTCTGCAGATGATCTTAAGACCG
CTGTGCGACTTGCCATCCTCCCACGCTCACTGGTTATGAACGACAGTCAG
ATGGAACAGGAAATGGATGCACCCCCGCCGCCACCGCCGCCACCACCCCA
GAATCAGGACGAAGATATTGACGACGAGCTGCAGGAAGAAGAAGACGAGC
CTCAGGACCAAGAGCAGCAAGAGGAACAGGAGGAGGAAGCTCCGGAGCTT
CCGGAAGAGTTCATGTTTGATCCCGAAGGAGTAGTCATGGATCCAGAACT
TCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCAGGAGGAAGAGGCC
TTGTGTTCTCCCAGGATCGCGGGCGATATATCAAGGCGATGCTACCTCGT
GGAGGAACTCAGCGTCTCGCAGTCGATGCGACGTTACGTGCTGCTGCTCC
CTTCCAGAAAGGAAGACGTACGAGAGCGACAGATGCAGGCCGGCGAAAAG
TGTTTGTTGAAGAATCTGACATGCGTGTAAAACGTCTAGCGAGGAAGGCT
GGTGCCCTTGTTGTGTTCTTGGTTGATGCAAGTGGCTCGATGGCATTGAA
TAGGATGAATGCGGCAAAAGGAGCTGCGATACGATTATTGACAGAGGCAT
ATCAGACGAGAGACAAGGTCTCCCTTATACCTTTCCAGGGTAATCGAGCC
GAAGTTGTCCTGCCCCCAACAAAGAGCGTCACGATGGCGAAGAAGCGCTT
GGAAACAATGCCTTGTGGCGGCGGTTCGCCTTTGGCTCACGGTTTGATGC
AATCCGTACGAGTCGGCGTAAACGCGCAAAAGAGCGGTGACATCGGAAAA
GTTATCATAGTTTGCATCTCTGATGGTCGTGCCAATGTCCCGCTCGCAAT
CAGCGAAGGTGAGGAATTGGAAGAGAAGATGAGCAAAGCAGATCTGAAGC
AGGAAACGTTAAACATCGCGAAACAGATTGCCGCTATATCAGGGATTGAC
CTTCTGTGCATAGATACGGAAAACAAGTTCGTTAGCACAGGTATGGCGAA
GGAAATAGCAAATAATGCCGGTGGCACTTATCACTCTTTGCCAAAGGCTA
CTGATGCTGCGGTTGCGGGTGTTGCCAGTTCAGCTATTGAAGCTATGAAG
GCGTAA

protein sequence of Ggra3011.t1

>Ggra3011.t1 ID=Ggra3011.t1|Name=Ggra3011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=752bp
MSPSAPLPSPSAFVPSIPLPPRRRRPRNTHHCAPVCTLSAQDPQTNTAFA
TPAQRAAAAAALEQSQNASTLPDRAEQDSSRIFPLAAVVGQDFVKLSLLL
AAVNSRISGVGISGRRGTAKSVMARAIHALLPPIEVVTGSYFNEEPPPPP
DTCEMNDDTPDPNRAVIPAPFVQVPLNVTEDRLIGSVDVEQSVRTGETVF
QPGLLASAHRGVLYIDELNLLDDGLANILVEVISSGVVRIEREGLSVSHP
CRPLVIATYNPEEGLVRPHLLDRLAINLSVDAVPLSMEQRVEAVESATTY
SDDPTSFVTKLHDETDQMSTSIVLAREYLEEVSISNEQVGYLVTEAVRAA
CQGHRAELFALEIAKAAAALDGREKVSADDLKTAVRLAILPRSLVMNDSQ
MEQEMDAPPPPPPPPPQNQDEDIDDELQEEEDEPQDQEQQEEQEEEAPEL
PEEFMFDPEGVVMDPELLEFSKSQKQGKAGGRGLVFSQDRGRYIKAMLPR
GGTQRLAVDATLRAAAPFQKGRRTRATDAGRRKVFVEESDMRVKRLARKA
GALVVFLVDASGSMALNRMNAAKGAAIRLLTEAYQTRDKVSLIPFQGNRA
EVVLPPTKSVTMAKKRLETMPCGGGSPLAHGLMQSVRVGVNAQKSGDIGK
VIIVCISDGRANVPLAISEGEELEEKMSKADLKQETLNIAKQIAAISGID
LLCIDTENKFVSTGMAKEIANNAGGTYHSLPKATDAAVAGVASSAIEAMK
A*

mRNA from alignment at tig00000858_pilon:860824..863079-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3011.t1 ID=Ggra3011.t1|Name=Ggra3011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2256bp|location=Sequence derived from alignment at tig00000858_pilon:860824..863079- (Gracilaria gracilis GNS1m male)
ATGTCACCGTCGGCCCCTCTTCCGTCCCCATCTGCCTTCGTTCCCTCCAT
CCCGCTCCCTCCCCGTCGCCGCCGACCACGCAACACCCATCACTGCGCCC
CAGTCTGCACTCTCTCCGCTCAAGACCCGCAGACCAACACCGCCTTCGCA
ACTCCTGCGCAGCGTGCTGCCGCCGCCGCCGCTCTCGAACAATCTCAGAA
TGCTTCCACGCTTCCCGATCGCGCGGAGCAAGACTCCTCACGCATCTTCC
CGCTTGCCGCCGTCGTTGGCCAGGACTTCGTCAAGTTGTCGCTACTGCTA
GCCGCCGTCAATTCGCGTATTTCTGGCGTCGGCATCAGTGGGCGCCGCGG
TACGGCTAAATCGGTAATGGCACGCGCCATTCATGCCCTTCTCCCGCCCA
TTGAGGTTGTTACTGGTAGCTATTTCAATGAAGAGCCACCACCACCCCCG
GACACATGTGAAATGAACGATGATACGCCAGATCCAAATCGTGCTGTTAT
TCCGGCACCATTTGTTCAGGTCCCGCTCAATGTCACTGAAGATCGCTTAA
TTGGATCCGTCGACGTTGAACAATCTGTTAGGACGGGCGAGACAGTCTTT
CAACCGGGCCTGCTGGCAAGCGCTCATCGCGGTGTGCTTTATATTGACGA
GCTCAATCTCCTCGATGACGGATTAGCAAACATTCTTGTCGAGGTCATAT
CAAGCGGCGTTGTTCGTATCGAACGTGAGGGCTTGTCCGTATCGCATCCA
TGCCGACCACTCGTTATTGCCACATACAATCCAGAGGAGGGCCTCGTACG
CCCACATTTGCTCGATCGATTGGCAATCAATCTTTCTGTAGATGCCGTCC
CACTCTCTATGGAGCAAAGAGTTGAAGCCGTTGAGTCGGCTACGACTTAC
AGCGATGATCCTACTAGTTTCGTAACAAAGTTGCATGATGAGACTGATCA
AATGTCTACCAGCATTGTGCTTGCACGCGAGTACTTGGAAGAAGTTTCGA
TATCTAACGAACAAGTCGGCTATCTTGTTACAGAGGCCGTACGGGCAGCG
TGTCAGGGTCATCGCGCCGAACTATTCGCCTTGGAGATTGCGAAAGCAGC
TGCGGCTTTAGATGGGAGAGAAAAGGTTTCTGCAGATGATCTTAAGACCG
CTGTGCGACTTGCCATCCTCCCACGCTCACTGGTTATGAACGACAGTCAG
ATGGAACAGGAAATGGATGCACCCCCGCCGCCACCGCCGCCACCACCCCA
GAATCAGGACGAAGATATTGACGACGAGCTGCAGGAAGAAGAAGACGAGC
CTCAGGACCAAGAGCAGCAAGAGGAACAGGAGGAGGAAGCTCCGGAGCTT
CCGGAAGAGTTCATGTTTGATCCCGAAGGAGTAGTCATGGATCCAGAACT
TCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCAGGAGGAAGAGGCC
TTGTGTTCTCCCAGGATCGCGGGCGATATATCAAGGCGATGCTACCTCGT
GGAGGAACTCAGCGTCTCGCAGTCGATGCGACGTTACGTGCTGCTGCTCC
CTTCCAGAAAGGAAGACGTACGAGAGCGACAGATGCAGGCCGGCGAAAAG
TGTTTGTTGAAGAATCTGACATGCGTGTAAAACGTCTAGCGAGGAAGGCT
GGTGCCCTTGTTGTGTTCTTGGTTGATGCAAGTGGCTCGATGGCATTGAA
TAGGATGAATGCGGCAAAAGGAGCTGCGATACGATTATTGACAGAGGCAT
ATCAGACGAGAGACAAGGTCTCCCTTATACCTTTCCAGGGTAATCGAGCC
GAAGTTGTCCTGCCCCCAACAAAGAGCGTCACGATGGCGAAGAAGCGCTT
GGAAACAATGCCTTGTGGCGGCGGTTCGCCTTTGGCTCACGGTTTGATGC
AATCCGTACGAGTCGGCGTAAACGCGCAAAAGAGCGGTGACATCGGAAAA
GTTATCATAGTTTGCATCTCTGATGGTCGTGCCAATGTCCCGCTCGCAAT
CAGCGAAGGTGAGGAATTGGAAGAGAAGATGAGCAAAGCAGATCTGAAGC
AGGAAACGTTAAACATCGCGAAACAGATTGCCGCTATATCAGGGATTGAC
CTTCTGTGCATAGATACGGAAAACAAGTTCGTTAGCACAGGTATGGCGAA
GGAAATAGCAAATAATGCCGGTGGCACTTATCACTCTTTGCCAAAGGCTA
CTGATGCTGCGGTTGCGGGTGTTGCCAGTTCAGCTATTGAAGCTATGAAG
GCGTAA

Coding sequence (CDS) from alignment at tig00000858_pilon:860824..863079-

>Ggra3011.t1 ID=Ggra3011.t1|Name=Ggra3011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2256bp|location=Sequence derived from alignment at tig00000858_pilon:860824..863079- (Gracilaria gracilis GNS1m male)
ATGTCACCGTCGGCCCCTCTTCCGTCCCCATCTGCCTTCGTTCCCTCCAT
CCCGCTCCCTCCCCGTCGCCGCCGACCACGCAACACCCATCACTGCGCCC
CAGTCTGCACTCTCTCCGCTCAAGACCCGCAGACCAACACCGCCTTCGCA
ACTCCTGCGCAGCGTGCTGCCGCCGCCGCCGCTCTCGAACAATCTCAGAA
TGCTTCCACGCTTCCCGATCGCGCGGAGCAAGACTCCTCACGCATCTTCC
CGCTTGCCGCCGTCGTTGGCCAGGACTTCGTCAAGTTGTCGCTACTGCTA
GCCGCCGTCAATTCGCGTATTTCTGGCGTCGGCATCAGTGGGCGCCGCGG
TACGGCTAAATCGGTAATGGCACGCGCCATTCATGCCCTTCTCCCGCCCA
TTGAGGTTGTTACTGGTAGCTATTTCAATGAAGAGCCACCACCACCCCCG
GACACATGTGAAATGAACGATGATACGCCAGATCCAAATCGTGCTGTTAT
TCCGGCACCATTTGTTCAGGTCCCGCTCAATGTCACTGAAGATCGCTTAA
TTGGATCCGTCGACGTTGAACAATCTGTTAGGACGGGCGAGACAGTCTTT
CAACCGGGCCTGCTGGCAAGCGCTCATCGCGGTGTGCTTTATATTGACGA
GCTCAATCTCCTCGATGACGGATTAGCAAACATTCTTGTCGAGGTCATAT
CAAGCGGCGTTGTTCGTATCGAACGTGAGGGCTTGTCCGTATCGCATCCA
TGCCGACCACTCGTTATTGCCACATACAATCCAGAGGAGGGCCTCGTACG
CCCACATTTGCTCGATCGATTGGCAATCAATCTTTCTGTAGATGCCGTCC
CACTCTCTATGGAGCAAAGAGTTGAAGCCGTTGAGTCGGCTACGACTTAC
AGCGATGATCCTACTAGTTTCGTAACAAAGTTGCATGATGAGACTGATCA
AATGTCTACCAGCATTGTGCTTGCACGCGAGTACTTGGAAGAAGTTTCGA
TATCTAACGAACAAGTCGGCTATCTTGTTACAGAGGCCGTACGGGCAGCG
TGTCAGGGTCATCGCGCCGAACTATTCGCCTTGGAGATTGCGAAAGCAGC
TGCGGCTTTAGATGGGAGAGAAAAGGTTTCTGCAGATGATCTTAAGACCG
CTGTGCGACTTGCCATCCTCCCACGCTCACTGGTTATGAACGACAGTCAG
ATGGAACAGGAAATGGATGCACCCCCGCCGCCACCGCCGCCACCACCCCA
GAATCAGGACGAAGATATTGACGACGAGCTGCAGGAAGAAGAAGACGAGC
CTCAGGACCAAGAGCAGCAAGAGGAACAGGAGGAGGAAGCTCCGGAGCTT
CCGGAAGAGTTCATGTTTGATCCCGAAGGAGTAGTCATGGATCCAGAACT
TCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCAGGAGGAAGAGGCC
TTGTGTTCTCCCAGGATCGCGGGCGATATATCAAGGCGATGCTACCTCGT
GGAGGAACTCAGCGTCTCGCAGTCGATGCGACGTTACGTGCTGCTGCTCC
CTTCCAGAAAGGAAGACGTACGAGAGCGACAGATGCAGGCCGGCGAAAAG
TGTTTGTTGAAGAATCTGACATGCGTGTAAAACGTCTAGCGAGGAAGGCT
GGTGCCCTTGTTGTGTTCTTGGTTGATGCAAGTGGCTCGATGGCATTGAA
TAGGATGAATGCGGCAAAAGGAGCTGCGATACGATTATTGACAGAGGCAT
ATCAGACGAGAGACAAGGTCTCCCTTATACCTTTCCAGGGTAATCGAGCC
GAAGTTGTCCTGCCCCCAACAAAGAGCGTCACGATGGCGAAGAAGCGCTT
GGAAACAATGCCTTGTGGCGGCGGTTCGCCTTTGGCTCACGGTTTGATGC
AATCCGTACGAGTCGGCGTAAACGCGCAAAAGAGCGGTGACATCGGAAAA
GTTATCATAGTTTGCATCTCTGATGGTCGTGCCAATGTCCCGCTCGCAAT
CAGCGAAGGTGAGGAATTGGAAGAGAAGATGAGCAAAGCAGATCTGAAGC
AGGAAACGTTAAACATCGCGAAACAGATTGCCGCTATATCAGGGATTGAC
CTTCTGTGCATAGATACGGAAAACAAGTTCGTTAGCACAGGTATGGCGAA
GGAAATAGCAAATAATGCCGGTGGCACTTATCACTCTTTGCCAAAGGCTA
CTGATGCTGCGGTTGCGGGTGTTGCCAGTTCAGCTATTGAAGCTATGAAG
GCGTAA