Ggra3008.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3008.t1
Unique NameGgra3008.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:857374..857931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704880.1
Preferred nameHGPRT
PFAMsPribosyltran
Max annot lvl2759|Eukaryota
KEGG rclassRC00063,RC00122
KEGG koko:K00760
KEGG ReactionR00190,R01132,R01229,R02142,R08237,R08238,R08245
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
Evalue2.31e-49
EggNOG OGsCOG0634@1|root,KOG3367@2759|Eukaryota
EC2.4.2.8
Descriptionguanine phosphoribosyltransferase activity
COG categoryF
BiGG ReactioniRC1080.CRv4_Au5_s17_g7207_t1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3008Ggra3008Gracilaria gracilis GNS1m malegenetig00000858_pilon 857374..857931 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3008.t1.stop1Ggra3008.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 857374..857376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3008.t1.CDS1Ggra3008.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 857374..857931 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3008.t1.exon1Ggra3008.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 857374..857931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3008.t1.start1Ggra3008.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 857929..857931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3008.t1Ggra3008.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 857374..857931 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3008.t1 ID=Ggra3008.t1|Name=Ggra3008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MESGGPVPSEWVGSVSEILIGSADIAKRVSQLGKTISSRYEGLNPLLVVV
LKGSYMFASDLSRSMSIPHELEFIRASSYAGTESSGNVHIDGLHNKKLHD
RHVIVIEDIVDTGLTLSRLYAHFEGAGAATITTCSFLEKETVRRKADVPT
IDFVAFRIPDKFVIGYGLDYEQQYRHLPFVGVYKQ*
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spliced messenger RNA

>Ggra3008.t1 ID=Ggra3008.t1|Name=Ggra3008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000858_pilon:857374..857931- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTGGAGGACCGGTACCTTCCGAATGGGTGGGCTCTGTCTCCGA
GATTTTGATCGGGTCAGCAGACATTGCAAAGCGCGTCTCCCAACTTGGCA
AAACGATATCATCGAGATACGAAGGTTTAAATCCGCTTTTGGTCGTCGTT
CTAAAAGGGTCGTACATGTTCGCCTCAGACCTGTCCCGTTCCATGAGCAT
CCCCCACGAGCTCGAATTCATCCGCGCAAGCAGCTACGCCGGCACGGAAA
GCAGTGGAAACGTGCACATTGACGGCTTGCACAACAAAAAGCTGCACGAC
AGACACGTCATCGTAATAGAGGACATTGTTGATACTGGACTTACTTTGAG
TCGGTTGTACGCACATTTTGAGGGTGCTGGTGCGGCTACGATTACCACGT
GCTCATTCTTGGAAAAAGAAACGGTGAGGCGAAAGGCGGATGTTCCAACG
ATTGACTTTGTAGCGTTTCGTATCCCAGATAAGTTTGTGATTGGATATGG
TTTGGATTATGAACAGCAGTATCGTCATTTACCTTTTGTAGGTGTGTACA
AACAATAA
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protein sequence of Ggra3008.t1

>Ggra3008.t1 ID=Ggra3008.t1|Name=Ggra3008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MESGGPVPSEWVGSVSEILIGSADIAKRVSQLGKTISSRYEGLNPLLVVV
LKGSYMFASDLSRSMSIPHELEFIRASSYAGTESSGNVHIDGLHNKKLHD
RHVIVIEDIVDTGLTLSRLYAHFEGAGAATITTCSFLEKETVRRKADVPT
IDFVAFRIPDKFVIGYGLDYEQQYRHLPFVGVYKQ*
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mRNA from alignment at tig00000858_pilon:857374..857931-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3008.t1 ID=Ggra3008.t1|Name=Ggra3008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000858_pilon:857374..857931- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGGAGGACCGGTACCTTCCGAATGGGTGGGCTCTGTCTCCGA
GATTTTGATCGGGTCAGCAGACATTGCAAAGCGCGTCTCCCAACTTGGCA
AAACGATATCATCGAGATACGAAGGTTTAAATCCGCTTTTGGTCGTCGTT
CTAAAAGGGTCGTACATGTTCGCCTCAGACCTGTCCCGTTCCATGAGCAT
CCCCCACGAGCTCGAATTCATCCGCGCAAGCAGCTACGCCGGCACGGAAA
GCAGTGGAAACGTGCACATTGACGGCTTGCACAACAAAAAGCTGCACGAC
AGACACGTCATCGTAATAGAGGACATTGTTGATACTGGACTTACTTTGAG
TCGGTTGTACGCACATTTTGAGGGTGCTGGTGCGGCTACGATTACCACGT
GCTCATTCTTGGAAAAAGAAACGGTGAGGCGAAAGGCGGATGTTCCAACG
ATTGACTTTGTAGCGTTTCGTATCCCAGATAAGTTTGTGATTGGATATGG
TTTGGATTATGAACAGCAGTATCGTCATTTACCTTTTGTAGGTGTGTACA
AACAATAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:857374..857931-

>Ggra3008.t1 ID=Ggra3008.t1|Name=Ggra3008.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000858_pilon:857374..857931- (Gracilaria gracilis GNS1m male)
ATGGAGAGTGGAGGACCGGTACCTTCCGAATGGGTGGGCTCTGTCTCCGA
GATTTTGATCGGGTCAGCAGACATTGCAAAGCGCGTCTCCCAACTTGGCA
AAACGATATCATCGAGATACGAAGGTTTAAATCCGCTTTTGGTCGTCGTT
CTAAAAGGGTCGTACATGTTCGCCTCAGACCTGTCCCGTTCCATGAGCAT
CCCCCACGAGCTCGAATTCATCCGCGCAAGCAGCTACGCCGGCACGGAAA
GCAGTGGAAACGTGCACATTGACGGCTTGCACAACAAAAAGCTGCACGAC
AGACACGTCATCGTAATAGAGGACATTGTTGATACTGGACTTACTTTGAG
TCGGTTGTACGCACATTTTGAGGGTGCTGGTGCGGCTACGATTACCACGT
GCTCATTCTTGGAAAAAGAAACGGTGAGGCGAAAGGCGGATGTTCCAACG
ATTGACTTTGTAGCGTTTCGTATCCCAGATAAGTTTGTGATTGGATATGG
TTTGGATTATGAACAGCAGTATCGTCATTTACCTTTTGTAGGTGTGTACA
AACAATAA
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