Ggra3007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3007.t1
Unique Name	Ggra3007.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:855942..856958 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ105CT
PFAMs	Tic22
Max annot lvl	2759\|Eukaryota
Evalue	1.63e-69
EggNOG OGs	2DZXZ@1\|root,2S7E9@2759\|Eukaryota
Description	Tic22-like family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3007	Ggra3007	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 855942..856958 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3007.t1.start1	Ggra3007.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 855942..855944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3007.t1.CDS1	Ggra3007.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 855942..856958 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3007.t1.exon1	Ggra3007.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 855942..856958 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3007.t1.stop1	Ggra3007.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 856956..856958 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3007.t1	Ggra3007.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 855942..856958 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:855942..856958+
coding sequence from alignment at tig00000858_pilon:855942..856958+

mRNA sequence

>Ggra3007.t1 ID=Ggra3007.t1|Name=Ggra3007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MAFTSPPTPLSSVSSSRAPLLSARRAAARSSTAAAAPPRMSAAPKPPASS
SGSAAAPFPWRSVALSTTAATLATILTPVLQTNVQSPQTPLSVTQALVQP
AFAAARFSKKTVSEKLSQVPVFAVTNASGQPYLAKMDGSGSQIGLIFFSH
HDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPTPSGIRGSGGEEM
TMVFRFYPDSKQVKAAEGLQRKMRLSANVQGVPVFVAKGLTLRKGNENIV
PLFLTKEDLDASWAKLKETNKELPNSAPVAVGNLLYIIQQMESDEQPELK
KLGFFAPRASVEYVSKEQAGPTGQARLHQNPVSPQQTK*

spliced messenger RNA

>Ggra3007.t1 ID=Ggra3007.t1|Name=Ggra3007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000858_pilon:855942..856958+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTACGAGTCCCCCTACGCCGCTCTCCAGCGTGTCTTCGTCGCG
TGCGCCGCTTCTCAGTGCGcgccgtgcggccgcgcgctcgtccaccgccg
cggccgcgccgccgcGCATGAGCGCCGCTCCGAAGCCACCTGCTTCTTCT
TCGGGTTCAGCCGCTGCGCCGTTTCCATGGCGGTCCGTGGCTCTGTCCAC
CACTGCTGCTACGCTCGCAACCATTCTAACCCCCGTTCTTCAAACCAATG
TGCAATCACCGCAAACGCCTCTCTCTGTAACACAAGCTCTAGTTCAACCT
GCCTTCGCTGCCGCAAGGTTCTCCAAGAAGACCGTGTCTGAAAAGTTGTC
TCAAGTGCCGGTATTCGCTGTTACCAATGCATCCGGCCAGCCGTACCTCG
CCAAGATGGATGGCTCGGGTAGTCAAATCGGTCTCATCTTCTTCTCTCAT
CATGATGCGTTAAACATGTTAAAAGACATGAAAAAAAATCCGGGAGCGTC
CGATGCGCGCGTCTACATTATGGGTTTGGATAAGGCTTATGAGATGGTCA
AAGCAAAACCAACACCCTCTGGCATTCGCGGCTCAGGTGGGGAGGAGATG
ACCATGGTGTTCCGATTTTACCCGGATTCGAAGCAAGTCAAGGCTGCCGA
AGGTTTGCAACGGAAGATGAGACTTTCAGCTAATGTTCAAGGTGTCCCTG
TGTTTGTTGCTAAAGGTCTCACCCTGAGAAAGGGCAACGAAAATATTGTT
CCCTTGTTTCTCACAAAGGAGGATTTGGATGCTTCTTGGGCAAAGTTGAA
GGAGACAAACAAGGAATTACCGAATAGTGCTCCAGTAGCTGTTGGAAATT
TGTTGTACATCATTCAGCAAATGGAGAGTGACGAACAACCTGAGTTGAAA
AAGTTGGGTTTCTTTGCGCCGCGAGCTTCTGTTGAGTATGTCTCGAAGGA
GCAGGCAGGCCCAACCGGTCAAGCAAGGTTACATCAGAATCCCGTCAGTC
CTCAACAAACTAAGTGA

protein sequence of Ggra3007.t1

>Ggra3007.t1 ID=Ggra3007.t1|Name=Ggra3007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MAFTSPPTPLSSVSSSRAPLLSARRAAARSSTAAAAPPRMSAAPKPPASS
SGSAAAPFPWRSVALSTTAATLATILTPVLQTNVQSPQTPLSVTQALVQP
AFAAARFSKKTVSEKLSQVPVFAVTNASGQPYLAKMDGSGSQIGLIFFSH
HDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPTPSGIRGSGGEEM
TMVFRFYPDSKQVKAAEGLQRKMRLSANVQGVPVFVAKGLTLRKGNENIV
PLFLTKEDLDASWAKLKETNKELPNSAPVAVGNLLYIIQQMESDEQPELK
KLGFFAPRASVEYVSKEQAGPTGQARLHQNPVSPQQTK*

mRNA from alignment at tig00000858_pilon:855942..856958+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3007.t1 ID=Ggra3007.t1|Name=Ggra3007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000858_pilon:855942..856958+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTACGAGTCCCCCTACGCCGCTCTCCAGCGTGTCTTCGTCGCG
TGCGCCGCTTCTCAGTGCGcgccgtgcggccgcgcgctcgtccaccgccg
cggccgcgccgccgcGCATGAGCGCCGCTCCGAAGCCACCTGCTTCTTCT
TCGGGTTCAGCCGCTGCGCCGTTTCCATGGCGGTCCGTGGCTCTGTCCAC
CACTGCTGCTACGCTCGCAACCATTCTAACCCCCGTTCTTCAAACCAATG
TGCAATCACCGCAAACGCCTCTCTCTGTAACACAAGCTCTAGTTCAACCT
GCCTTCGCTGCCGCAAGGTTCTCCAAGAAGACCGTGTCTGAAAAGTTGTC
TCAAGTGCCGGTATTCGCTGTTACCAATGCATCCGGCCAGCCGTACCTCG
CCAAGATGGATGGCTCGGGTAGTCAAATCGGTCTCATCTTCTTCTCTCAT
CATGATGCGTTAAACATGTTAAAAGACATGAAAAAAAATCCGGGAGCGTC
CGATGCGCGCGTCTACATTATGGGTTTGGATAAGGCTTATGAGATGGTCA
AAGCAAAACCAACACCCTCTGGCATTCGCGGCTCAGGTGGGGAGGAGATG
ACCATGGTGTTCCGATTTTACCCGGATTCGAAGCAAGTCAAGGCTGCCGA
AGGTTTGCAACGGAAGATGAGACTTTCAGCTAATGTTCAAGGTGTCCCTG
TGTTTGTTGCTAAAGGTCTCACCCTGAGAAAGGGCAACGAAAATATTGTT
CCCTTGTTTCTCACAAAGGAGGATTTGGATGCTTCTTGGGCAAAGTTGAA
GGAGACAAACAAGGAATTACCGAATAGTGCTCCAGTAGCTGTTGGAAATT
TGTTGTACATCATTCAGCAAATGGAGAGTGACGAACAACCTGAGTTGAAA
AAGTTGGGTTTCTTTGCGCCGCGAGCTTCTGTTGAGTATGTCTCGAAGGA
GCAGGCAGGCCCAACCGGTCAAGCAAGGTTACATCAGAATCCCGTCAGTC
CTCAACAAACTAAGTGA

Coding sequence (CDS) from alignment at tig00000858_pilon:855942..856958+

>Ggra3007.t1 ID=Ggra3007.t1|Name=Ggra3007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000858_pilon:855942..856958+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTACGAGTCCCCCTACGCCGCTCTCCAGCGTGTCTTCGTCGCG
TGCGCCGCTTCTCAGTGCGcgccgtgcggccgcgcgctcgtccaccgccg
cggccgcgccgccgcGCATGAGCGCCGCTCCGAAGCCACCTGCTTCTTCT
TCGGGTTCAGCCGCTGCGCCGTTTCCATGGCGGTCCGTGGCTCTGTCCAC
CACTGCTGCTACGCTCGCAACCATTCTAACCCCCGTTCTTCAAACCAATG
TGCAATCACCGCAAACGCCTCTCTCTGTAACACAAGCTCTAGTTCAACCT
GCCTTCGCTGCCGCAAGGTTCTCCAAGAAGACCGTGTCTGAAAAGTTGTC
TCAAGTGCCGGTATTCGCTGTTACCAATGCATCCGGCCAGCCGTACCTCG
CCAAGATGGATGGCTCGGGTAGTCAAATCGGTCTCATCTTCTTCTCTCAT
CATGATGCGTTAAACATGTTAAAAGACATGAAAAAAAATCCGGGAGCGTC
CGATGCGCGCGTCTACATTATGGGTTTGGATAAGGCTTATGAGATGGTCA
AAGCAAAACCAACACCCTCTGGCATTCGCGGCTCAGGTGGGGAGGAGATG
ACCATGGTGTTCCGATTTTACCCGGATTCGAAGCAAGTCAAGGCTGCCGA
AGGTTTGCAACGGAAGATGAGACTTTCAGCTAATGTTCAAGGTGTCCCTG
TGTTTGTTGCTAAAGGTCTCACCCTGAGAAAGGGCAACGAAAATATTGTT
CCCTTGTTTCTCACAAAGGAGGATTTGGATGCTTCTTGGGCAAAGTTGAA
GGAGACAAACAAGGAATTACCGAATAGTGCTCCAGTAGCTGTTGGAAATT
TGTTGTACATCATTCAGCAAATGGAGAGTGACGAACAACCTGAGTTGAAA
AAGTTGGGTTTCTTTGCGCCGCGAGCTTCTGTTGAGTATGTCTCGAAGGA
GCAGGCAGGCCCAACCGGTCAAGCAAGGTTACATCAGAATCCCGTCAGTC
CTCAACAAACTAAGTGA