Ggra3006.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3006.t1
Unique NameGgra3006.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:854904..855356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3006Ggra3006Gracilaria gracilis GNS1m malegenetig00000858_pilon 854904..855356 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3006.t1.stop1Ggra3006.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 854904..854906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3006.t1.CDS1Ggra3006.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 854904..855356 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3006.t1.exon1Ggra3006.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 854904..855356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3006.t1.start1Ggra3006.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 855354..855356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3006.t1Ggra3006.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 854904..855356 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3006.t1 ID=Ggra3006.t1|Name=Ggra3006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=151bp
MPTQDELPTRHDKRKQHRQVIHFSKRQHLFLHTLQHWIQIFTTVPHLSGL
QISIRTADLSLHPHLSELELDFASLFALPPPLPLPLFDALTEMDFDTLID
LDPLFDADTLMLFDTDTLLDPSSSDAEIDFEIDTDAEPLPLPYDPTPSDA
*
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spliced messenger RNA

>Ggra3006.t1 ID=Ggra3006.t1|Name=Ggra3006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000858_pilon:854904..855356- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACACAAGACGAGCTTCCCACACGCCACGACAAAAGGAAACAGCA
CCGCCAGGTAATCCACTTCAGCAAACGTCAGCACCTCTTCCTACACACGC
TACAACACTGGATACAAATCTTCACCACCGTTCCACATCTATCCGGTTTA
CAAATCTCGATACGCACTGCAGACTTATCCCTACATCCACACTTGTCCGA
GCTCGAGCTCGACTTTGCTTCACTCTTCGCGCTACCACCACCGCTGCCGC
TGCCACTCTTCGACGCACTCACAGAGATGGACTTCGATACACTAATCGAC
TTGGACCCGCTCTTCGACGCCGACACACTAATGCTCTTTGACACGGACAC
GCTCCTGGACCCATCCTCTTCCGATGCAGAGATAGACTTTGAAATCGATA
CCGACGCAGAGCCACTTCCACTGCCGTACGACCCAACCCCCTCCGACGCC
TGA
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protein sequence of Ggra3006.t1

>Ggra3006.t1 ID=Ggra3006.t1|Name=Ggra3006.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=151bp
MPTQDELPTRHDKRKQHRQVIHFSKRQHLFLHTLQHWIQIFTTVPHLSGL
QISIRTADLSLHPHLSELELDFASLFALPPPLPLPLFDALTEMDFDTLID
LDPLFDADTLMLFDTDTLLDPSSSDAEIDFEIDTDAEPLPLPYDPTPSDA
*
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mRNA from alignment at tig00000858_pilon:854904..855356-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3006.t1 ID=Ggra3006.t1|Name=Ggra3006.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000858_pilon:854904..855356- (Gracilaria gracilis GNS1m male)
ATGCCAACACAAGACGAGCTTCCCACACGCCACGACAAAAGGAAACAGCA
CCGCCAGGTAATCCACTTCAGCAAACGTCAGCACCTCTTCCTACACACGC
TACAACACTGGATACAAATCTTCACCACCGTTCCACATCTATCCGGTTTA
CAAATCTCGATACGCACTGCAGACTTATCCCTACATCCACACTTGTCCGA
GCTCGAGCTCGACTTTGCTTCACTCTTCGCGCTACCACCACCGCTGCCGC
TGCCACTCTTCGACGCACTCACAGAGATGGACTTCGATACACTAATCGAC
TTGGACCCGCTCTTCGACGCCGACACACTAATGCTCTTTGACACGGACAC
GCTCCTGGACCCATCCTCTTCCGATGCAGAGATAGACTTTGAAATCGATA
CCGACGCAGAGCCACTTCCACTGCCGTACGACCCAACCCCCTCCGACGCC
TGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:854904..855356-

>Ggra3006.t1 ID=Ggra3006.t1|Name=Ggra3006.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00000858_pilon:854904..855356- (Gracilaria gracilis GNS1m male)
ATGCCAACACAAGACGAGCTTCCCACACGCCACGACAAAAGGAAACAGCA
CCGCCAGGTAATCCACTTCAGCAAACGTCAGCACCTCTTCCTACACACGC
TACAACACTGGATACAAATCTTCACCACCGTTCCACATCTATCCGGTTTA
CAAATCTCGATACGCACTGCAGACTTATCCCTACATCCACACTTGTCCGA
GCTCGAGCTCGACTTTGCTTCACTCTTCGCGCTACCACCACCGCTGCCGC
TGCCACTCTTCGACGCACTCACAGAGATGGACTTCGATACACTAATCGAC
TTGGACCCGCTCTTCGACGCCGACACACTAATGCTCTTTGACACGGACAC
GCTCCTGGACCCATCCTCTTCCGATGCAGAGATAGACTTTGAAATCGATA
CCGACGCAGAGCCACTTCCACTGCCGTACGACCCAACCCCCTCCGACGCC
TGA
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