Ggra3004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3004.t1
Unique NameGgra3004.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:852157..852879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01658T0
PFAMsELO
Max annot lvl4751|Fungi
KEGG rclassRC00004,RC00039,RC02728,RC02888,RC02997
KEGG koko:K10245
KEGG ReactionR07758,R07762,R09419,R10825
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
GOsGO:0000038,GO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009922,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019367,GO:0019368,GO:0019752,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0034625,GO:0034626,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046467,GO:0071704,GO:0072330,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Evalue9.78e-28
EggNOG OGsKOG3071@1|root,KOG3071@2759|Eukaryota,39J76@33154|Opisthokonta,3Q3IW@4751|Fungi
EC2.3.1.199
DescriptionVery-long-chain 3-oxoacyl-CoA synthase
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3004Ggra3004Gracilaria gracilis GNS1m malegenetig00000858_pilon 852157..852879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3004.t1.stop1Ggra3004.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 852157..852159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3004.t1.CDS1Ggra3004.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 852157..852879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3004.t1.exon1Ggra3004.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 852157..852879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3004.t1.start1Ggra3004.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 852877..852879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3004.t1Ggra3004.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 852157..852879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3004.t1 ID=Ggra3004.t1|Name=Ggra3004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MHPLLPPLAMLSYLLSIPLLKRLCARLNTTGKSAFFRAAALLHNLCLMTY
SLLTARSLIPLTLSHLTRHGVHSLYCTRALWHNGLSTLGFLFYLSKYVEL
IDTYLLIVKRRPPSFLQVYHHALTIYCAYLLQISHTSVTFLFVALNASVH
TIMYAYYALSTLSIRFPLKNLITVMQMVQFVIGILLGLPMYVLQNGQCAL
PSQKFALLAIILHAVYLLFLFANFYVRTYTKSKPAKSKTT*
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spliced messenger RNA

>Ggra3004.t1 ID=Ggra3004.t1|Name=Ggra3004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000858_pilon:852157..852879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCGCTGTTGCCGCCGCTGGCCATGCTGTCGTACCTGCTGTCCAT
CCCGCTGCTCAAGCGGCTGTGCGCGCGCCTCAACACCACGGGCAAGTCCG
CCTTCTTTCGCGCCGCCGCGCTGCTGCACAACCTTTGTCTCATGACGTAC
TCGCTGTTGACGGCGCGCTCGCTCATCCCCCTCACGCTGTCGCACCTCAC
CCGCCACGGCGTGCACTCGCTGTATTGTACGCGCGCGCTGTGGCACAACG
GCTTGTCTACGCTTGGCTTCTTGTTCTACTTGTCCAAGTACGTTGAGTTG
ATCGACACTTATTTGTTGATCGTCAAGCGCAGGCCGCCGTCCTTTCTTCA
GGTGTATCACCACGCCTTGACAATATACTGTGCCTATCTGCTTCAGATCT
CACACACCTCCGTCACGTTTTTGTTCGTCGCCTTGAATGCCTCCGTGCAC
ACCATCATGTACGCGTACTACGCCTTGTCCACTCTCTCCATTCGCTTCCC
GTTGAAGAATCTCATTACCGTCATGCAGATGGTTCAGTTCGTCATTGGAA
TCCTTTTAGGATTACCCATGTACGTATTGCAAAATGGGCAGTGTGCATTG
CCCTCTCAGAAATTCGCTTTACTCGCCATCATTCTCCACGCCGTCTACCT
TCTCTTTTTGTTTGCCAATTTCTACGTGCGCACCTACACCAAATCCAAAC
CGGCCAAGTCAAAAACCACATAA
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protein sequence of Ggra3004.t1

>Ggra3004.t1 ID=Ggra3004.t1|Name=Ggra3004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MHPLLPPLAMLSYLLSIPLLKRLCARLNTTGKSAFFRAAALLHNLCLMTY
SLLTARSLIPLTLSHLTRHGVHSLYCTRALWHNGLSTLGFLFYLSKYVEL
IDTYLLIVKRRPPSFLQVYHHALTIYCAYLLQISHTSVTFLFVALNASVH
TIMYAYYALSTLSIRFPLKNLITVMQMVQFVIGILLGLPMYVLQNGQCAL
PSQKFALLAIILHAVYLLFLFANFYVRTYTKSKPAKSKTT*
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mRNA from alignment at tig00000858_pilon:852157..852879-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3004.t1 ID=Ggra3004.t1|Name=Ggra3004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000858_pilon:852157..852879- (Gracilaria gracilis GNS1m male)
ATGCACCCGCTGTTGCCGCCGCTGGCCATGCTGTCGTACCTGCTGTCCAT
CCCGCTGCTCAAGCGGCTGTGCGCGCGCCTCAACACCACGGGCAAGTCCG
CCTTCTTTCGCGCCGCCGCGCTGCTGCACAACCTTTGTCTCATGACGTAC
TCGCTGTTGACGGCGCGCTCGCTCATCCCCCTCACGCTGTCGCACCTCAC
CCGCCACGGCGTGCACTCGCTGTATTGTACGCGCGCGCTGTGGCACAACG
GCTTGTCTACGCTTGGCTTCTTGTTCTACTTGTCCAAGTACGTTGAGTTG
ATCGACACTTATTTGTTGATCGTCAAGCGCAGGCCGCCGTCCTTTCTTCA
GGTGTATCACCACGCCTTGACAATATACTGTGCCTATCTGCTTCAGATCT
CACACACCTCCGTCACGTTTTTGTTCGTCGCCTTGAATGCCTCCGTGCAC
ACCATCATGTACGCGTACTACGCCTTGTCCACTCTCTCCATTCGCTTCCC
GTTGAAGAATCTCATTACCGTCATGCAGATGGTTCAGTTCGTCATTGGAA
TCCTTTTAGGATTACCCATGTACGTATTGCAAAATGGGCAGTGTGCATTG
CCCTCTCAGAAATTCGCTTTACTCGCCATCATTCTCCACGCCGTCTACCT
TCTCTTTTTGTTTGCCAATTTCTACGTGCGCACCTACACCAAATCCAAAC
CGGCCAAGTCAAAAACCACATAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:852157..852879-

>Ggra3004.t1 ID=Ggra3004.t1|Name=Ggra3004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000858_pilon:852157..852879- (Gracilaria gracilis GNS1m male)
ATGCACCCGCTGTTGCCGCCGCTGGCCATGCTGTCGTACCTGCTGTCCAT
CCCGCTGCTCAAGCGGCTGTGCGCGCGCCTCAACACCACGGGCAAGTCCG
CCTTCTTTCGCGCCGCCGCGCTGCTGCACAACCTTTGTCTCATGACGTAC
TCGCTGTTGACGGCGCGCTCGCTCATCCCCCTCACGCTGTCGCACCTCAC
CCGCCACGGCGTGCACTCGCTGTATTGTACGCGCGCGCTGTGGCACAACG
GCTTGTCTACGCTTGGCTTCTTGTTCTACTTGTCCAAGTACGTTGAGTTG
ATCGACACTTATTTGTTGATCGTCAAGCGCAGGCCGCCGTCCTTTCTTCA
GGTGTATCACCACGCCTTGACAATATACTGTGCCTATCTGCTTCAGATCT
CACACACCTCCGTCACGTTTTTGTTCGTCGCCTTGAATGCCTCCGTGCAC
ACCATCATGTACGCGTACTACGCCTTGTCCACTCTCTCCATTCGCTTCCC
GTTGAAGAATCTCATTACCGTCATGCAGATGGTTCAGTTCGTCATTGGAA
TCCTTTTAGGATTACCCATGTACGTATTGCAAAATGGGCAGTGTGCATTG
CCCTCTCAGAAATTCGCTTTACTCGCCATCATTCTCCACGCCGTCTACCT
TCTCTTTTTGTTTGCCAATTTCTACGTGCGCACCTACACCAAATCCAAAC
CGGCCAAGTCAAAAACCACATAA
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