Ggra3002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3002.t1
Unique NameGgra3002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:848752..849783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ095CT
PFAMsLactamase_B_3
Max annot lvl2759|Eukaryota
Evalue2.96e-37
EggNOG OGsCOG2220@1|root,2QQUU@2759|Eukaryota
DescriptionBeta-lactamase superfamily domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3002Ggra3002Gracilaria gracilis GNS1m malegenetig00000858_pilon 848752..849783 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3002.t1.stop1Ggra3002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 848752..848754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3002.t1.CDS1Ggra3002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 848752..849783 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3002.t1.exon1Ggra3002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 848752..849783 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3002.t1.start1Ggra3002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 849781..849783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3002.t1Ggra3002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 848752..849783 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3002.t1 ID=Ggra3002.t1|Name=Ggra3002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MSVAASFVAHAPLPLRALRAPPLARRAPRPMAPRRARAPRAQLTEPTPPA
AVTAAAAAAAAAQRGAGQQARASFTSLGGNSFIITHDALSLLVDPWLNDE
LIFGHPRFFRAVKQFTSVDVDAIDAIVLTQALPDHAHEPTLRRLPKHMPV
IAPPSARALLRALRFDNVVELPIGSSASPLAHAPLFSVSALKGAVVGPPW
STPENAYIFSFQRNEQCAPFRVYHEPHGTIDRHALRAYVDALDVAILPVM
SAEISTPIASYTLVHGSPDAFKSCEYLRPNTCVLFNNASGQYSGLLQTVL
RTEGDPQLFKEQASRHPTLSSMNVVFPELVGQTYPLHAPTPAC*
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spliced messenger RNA

>Ggra3002.t1 ID=Ggra3002.t1|Name=Ggra3002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000858_pilon:848752..849783- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTGGCCGCTTCCTTCGTCGCGCACGCGCCGCTGCCTCTGCGCGC
GCTGCGCGCGCCGCCGTTGGCGCGCCGCGCGCCGCGCCCGATGGCGCCGC
GCCGCGCGCGCGCGCCTCGCGCGCAGCTCACGGAGCCCACTCCGCCCGCA
GCGGTTACGGCGGCGGCGGCGGCTGCGGCGGCAGCGCAGCGCGGCGCCGG
CCAGCAGGCGCGCGCGTCGTTCACGTCGCTGGGCGGCAACTCGTTCATCA
TCACGCACGACGCGCTGTCGCTGCTGGTGGACCCGTGGCTCAACGACGAG
CTTATCTTTGGTCACCCGCGTTTCTTCCGCGCCGTCAAGCAGTTCACCAG
CGTGGACGTTGACGCCATTGACGCCATCGTGCTCACGCAGGCGCTTCCGG
ACCATGCGCACGAGCCCACGTTGCGGCGGCTGCCCAAACACATGCCCGTC
ATTGCGCCGCCTTCGGCGCGCGCGCTGCTGCGCGCGCTGCGTTTCGACAA
TGTGGTCGAGCTACCCATCGGCTCGAGCGCTTCGCCGCTTGCGCACGCGC
CCTTGTTCAGCGTGAGCGCGCTCAAGGGCGCCGTTGTGGGCCCGCCCTGG
TCCACGCCGGAGAACGCTTACATCTTCTCGTTTCAACGCAATGAGCAGTG
CGCACCGTTTCGAGTTTACCACGAGCCGCACGGCACCATTGATAGGCACG
CCTTGCGCGCGTATGTTGATGCGTTGGATGTTGCCATTTTGCCCGTTATG
TCCGCCGAGATTTCTACCCCGATTGCGTCGTATACGCTGGTGCACGGCTC
GCCGGACGCCTTCAAATCCTGTGAGTACCTGCGTCCTAACACCTGTGTTT
TGTTTAACAACGCTTCCGGACAGTATTCAGGCCTTCTTCAAACCGTTCTT
CGCACGGAAGGCGACCCGCAACTGTTCAAGGAGCAGGCGAGCCGTCACCC
TACGCTCAGTTCTATGAACGTTGTGTTCCCAGAGCTTGTGGGCCAAACTT
ATCCACTGCACGCACCAACACCTGCGTGTTGA
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protein sequence of Ggra3002.t1

>Ggra3002.t1 ID=Ggra3002.t1|Name=Ggra3002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MSVAASFVAHAPLPLRALRAPPLARRAPRPMAPRRARAPRAQLTEPTPPA
AVTAAAAAAAAAQRGAGQQARASFTSLGGNSFIITHDALSLLVDPWLNDE
LIFGHPRFFRAVKQFTSVDVDAIDAIVLTQALPDHAHEPTLRRLPKHMPV
IAPPSARALLRALRFDNVVELPIGSSASPLAHAPLFSVSALKGAVVGPPW
STPENAYIFSFQRNEQCAPFRVYHEPHGTIDRHALRAYVDALDVAILPVM
SAEISTPIASYTLVHGSPDAFKSCEYLRPNTCVLFNNASGQYSGLLQTVL
RTEGDPQLFKEQASRHPTLSSMNVVFPELVGQTYPLHAPTPAC*
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mRNA from alignment at tig00000858_pilon:848752..849783-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3002.t1 ID=Ggra3002.t1|Name=Ggra3002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000858_pilon:848752..849783- (Gracilaria gracilis GNS1m male)
ATGAGTGTGGCCGCTTCCTTCGTCGCGCACGCGCCGCTGCCTCTGCGCGC
GCTGCGCGCGCCGCCGTTGGCGCGCCGCGCGCCGCGCCCGATGGCGCCGC
GCCGCGCGCGCGCGCCTCGCGCGCAGCTCACGGAGCCCACTCCGCCCGCA
GCGGTTACGGCGGCGGCGGCGGCTGCGGCGGCAGCGCAGCGCGGCGCCGG
CCAGCAGGCGCGCGCGTCGTTCACGTCGCTGGGCGGCAACTCGTTCATCA
TCACGCACGACGCGCTGTCGCTGCTGGTGGACCCGTGGCTCAACGACGAG
CTTATCTTTGGTCACCCGCGTTTCTTCCGCGCCGTCAAGCAGTTCACCAG
CGTGGACGTTGACGCCATTGACGCCATCGTGCTCACGCAGGCGCTTCCGG
ACCATGCGCACGAGCCCACGTTGCGGCGGCTGCCCAAACACATGCCCGTC
ATTGCGCCGCCTTCGGCGCGCGCGCTGCTGCGCGCGCTGCGTTTCGACAA
TGTGGTCGAGCTACCCATCGGCTCGAGCGCTTCGCCGCTTGCGCACGCGC
CCTTGTTCAGCGTGAGCGCGCTCAAGGGCGCCGTTGTGGGCCCGCCCTGG
TCCACGCCGGAGAACGCTTACATCTTCTCGTTTCAACGCAATGAGCAGTG
CGCACCGTTTCGAGTTTACCACGAGCCGCACGGCACCATTGATAGGCACG
CCTTGCGCGCGTATGTTGATGCGTTGGATGTTGCCATTTTGCCCGTTATG
TCCGCCGAGATTTCTACCCCGATTGCGTCGTATACGCTGGTGCACGGCTC
GCCGGACGCCTTCAAATCCTGTGAGTACCTGCGTCCTAACACCTGTGTTT
TGTTTAACAACGCTTCCGGACAGTATTCAGGCCTTCTTCAAACCGTTCTT
CGCACGGAAGGCGACCCGCAACTGTTCAAGGAGCAGGCGAGCCGTCACCC
TACGCTCAGTTCTATGAACGTTGTGTTCCCAGAGCTTGTGGGCCAAACTT
ATCCACTGCACGCACCAACACCTGCGTGTTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:848752..849783-

>Ggra3002.t1 ID=Ggra3002.t1|Name=Ggra3002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000858_pilon:848752..849783- (Gracilaria gracilis GNS1m male)
ATGAGTGTGGCCGCTTCCTTCGTCGCGCACGCGCCGCTGCCTCTGCGCGC
GCTGCGCGCGCCGCCGTTGGCGCGCCGCGCGCCGCGCCCGATGGCGCCGC
GCCGCGCGCGCGCGCCTCGCGCGCAGCTCACGGAGCCCACTCCGCCCGCA
GCGGTTACGGCGGCGGCGGCGGCTGCGGCGGCAGCGCAGCGCGGCGCCGG
CCAGCAGGCGCGCGCGTCGTTCACGTCGCTGGGCGGCAACTCGTTCATCA
TCACGCACGACGCGCTGTCGCTGCTGGTGGACCCGTGGCTCAACGACGAG
CTTATCTTTGGTCACCCGCGTTTCTTCCGCGCCGTCAAGCAGTTCACCAG
CGTGGACGTTGACGCCATTGACGCCATCGTGCTCACGCAGGCGCTTCCGG
ACCATGCGCACGAGCCCACGTTGCGGCGGCTGCCCAAACACATGCCCGTC
ATTGCGCCGCCTTCGGCGCGCGCGCTGCTGCGCGCGCTGCGTTTCGACAA
TGTGGTCGAGCTACCCATCGGCTCGAGCGCTTCGCCGCTTGCGCACGCGC
CCTTGTTCAGCGTGAGCGCGCTCAAGGGCGCCGTTGTGGGCCCGCCCTGG
TCCACGCCGGAGAACGCTTACATCTTCTCGTTTCAACGCAATGAGCAGTG
CGCACCGTTTCGAGTTTACCACGAGCCGCACGGCACCATTGATAGGCACG
CCTTGCGCGCGTATGTTGATGCGTTGGATGTTGCCATTTTGCCCGTTATG
TCCGCCGAGATTTCTACCCCGATTGCGTCGTATACGCTGGTGCACGGCTC
GCCGGACGCCTTCAAATCCTGTGAGTACCTGCGTCCTAACACCTGTGTTT
TGTTTAACAACGCTTCCGGACAGTATTCAGGCCTTCTTCAAACCGTTCTT
CGCACGGAAGGCGACCCGCAACTGTTCAAGGAGCAGGCGAGCCGTCACCC
TACGCTCAGTTCTATGAACGTTGTGTTCCCAGAGCTTGTGGGCCAAACTT
ATCCACTGCACGCACCAACACCTGCGTGTTGA
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