Ggra3001.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3001.t1
Unique NameGgra3001.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:847677..848503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_08017T0
PFAMsEF-hand_1
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Evalue7.98e-54
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,38ETU@33154|Opisthokonta
Descriptioncalcium ion binding
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3001Ggra3001Gracilaria gracilis GNS1m malegenetig00000858_pilon 847677..848503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1Ggra3001.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 847677..848503 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1.start1Ggra3001.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 847677..847679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1.CDS1Ggra3001.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 847677..847736 +
Ggra3001.t1.CDS2Ggra3001.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 847995..848354 +
Ggra3001.t1.CDS3Ggra3001.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000858_pilon 848456..848503 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1.exon1Ggra3001.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 847677..847736 +
Ggra3001.t1.exon2Ggra3001.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 847995..848354 +
Ggra3001.t1.exon3Ggra3001.t1.exon3Gracilaria gracilis GNS1m maleexontig00000858_pilon 848456..848503 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1.intron1Ggra3001.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 847737..847994 +
Ggra3001.t1.intron2Ggra3001.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000858_pilon 848355..848455 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3001.t1.stop1Ggra3001.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 848501..848503 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3001.t1 ID=Ggra3001.t1|Name=Ggra3001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MAGMKAAPDLSEETIKEFREAFALFDKDGDGSITTTELGTVMRNLGQNPT
EEALRQMINEVDADGSGTIDFAEFLTLMARKMKTKDSEAEIVEAFKVFDK
DGSGKISAEELRQVMNNLGEQLSDAEVEEMIREADTNGDGEIDIAEFIRM
MGYGP*
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spliced messenger RNA

>Ggra3001.t1 ID=Ggra3001.t1|Name=Ggra3001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000858_pilon:847677..848503+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGAATGAAGGCGGCCCCGGATCTGTCTGAAGAGACCATCAAGGA
GTTTCGTGAGGCATTCGCTCTGTTCGACAAGGACGGCGATGGTTCAATCA
CCACAACAGAATTGGGAACCGTGATGCGCAATTTGGGTCAGAACCCCACC
GAAGAGGCTCTTCGCCAGATGATCAACGAGGTGGATGCGGACGGCAGTGG
AACAATTGACTTTGCGGAATTTCTCACCCTGATGGCGAGGAAGATGAAGA
CAAAGGACTCCGAGGCGGAGATTGTGGAAGCTTTCAAGGTGTTTGACAAG
GATGGCTCCGGTAAGATCTCGGCGGAGGAATTGAGACAAGTGATGAACAA
CTTGGGTGAACAGCTTTCCGACGCTGAGGTGGAGGAAATGATTCGCGAGG
CCGATACAAATGGCGATGGTGAAATCGACATTGCCGAGTTTATCCGAATG
ATGGGCTACGGTCCGTAA
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protein sequence of Ggra3001.t1

>Ggra3001.t1 ID=Ggra3001.t1|Name=Ggra3001.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MAGMKAAPDLSEETIKEFREAFALFDKDGDGSITTTELGTVMRNLGQNPT
EEALRQMINEVDADGSGTIDFAEFLTLMARKMKTKDSEAEIVEAFKVFDK
DGSGKISAEELRQVMNNLGEQLSDAEVEEMIREADTNGDGEIDIAEFIRM
MGYGP*
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mRNA from alignment at tig00000858_pilon:847677..848503+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3001.t1 ID=Ggra3001.t1|Name=Ggra3001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=827bp|location=Sequence derived from alignment at tig00000858_pilon:847677..848503+ (Gracilaria gracilis GNS1m male)
ATGGCTGGAATGAAGGCGGCCCCGGATCTGTCTGAAGAGACCATCAAGGA
GTTTCGTGAGGTAAGTACAGTAGCGCTTTTTTATCGATCCATGTGCGTCT
TTGGTTGCCTTGGCCGTCAACAAGCGCTTTGTCGCATGCTGCATGGCGTT
TGTCGTCGCCAATCTGTTTGCGTGTTACTCGCCAACTACCTTGGTACATG
CCGGAGGCGCCAAACATCTGCGCCTACGTCAGCAACACACAGGCAGAAAA
AAAAACGTTATTGTATATTAACTTTTGGCTTCCCTCACTGCGCGCGCAAT
TGAAACGCACTACACCAGGCATTCGCTCTGTTCGACAAGGACGGCGATGG
TTCAATCACCACAACAGAATTGGGAACCGTGATGCGCAATTTGGGTCAGA
ACCCCACCGAAGAGGCTCTTCGCCAGATGATCAACGAGGTGGATGCGGAC
GGCAGTGGAACAATTGACTTTGCGGAATTTCTCACCCTGATGGCGAGGAA
GATGAAGACAAAGGACTCCGAGGCGGAGATTGTGGAAGCTTTCAAGGTGT
TTGACAAGGATGGCTCCGGTAAGATCTCGGCGGAGGAATTGAGACAAGTG
ATGAACAACTTGGGTGAACAGCTTTCCGACGCTGAGGTGGAGGAAATGAT
TCGCGAGGCCGATACAAATGGCGATGGTGTACGTGCTGCTGCTCGATGCT
CTTTTTCTGTAATTTTTGTGGGGTGCTTTTATTGAATGCTAACATATGAG
TGTTTGTTTACCGCGTTGTATTTGTTTAGGAAATCGACATTGCCGAGTTT
ATCCGAATGATGGGCTACGGTCCGTAA
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Coding sequence (CDS) from alignment at tig00000858_pilon:847677..848503+

>Ggra3001.t1 ID=Ggra3001.t1|Name=Ggra3001.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000858_pilon:847677..848503+ (Gracilaria gracilis GNS1m male)
ATGGCTGGAATGAAGGCGGCCCCGGATCTGTCTGAAGAGACCATCAAGGA
GTTTCGTGAGGCATTCGCTCTGTTCGACAAGGACGGCGATGGTTCAATCA
CCACAACAGAATTGGGAACCGTGATGCGCAATTTGGGTCAGAACCCCACC
GAAGAGGCTCTTCGCCAGATGATCAACGAGGTGGATGCGGACGGCAGTGG
AACAATTGACTTTGCGGAATTTCTCACCCTGATGGCGAGGAAGATGAAGA
CAAAGGACTCCGAGGCGGAGATTGTGGAAGCTTTCAAGGTGTTTGACAAG
GATGGCTCCGGTAAGATCTCGGCGGAGGAATTGAGACAAGTGATGAACAA
CTTGGGTGAACAGCTTTCCGACGCTGAGGTGGAGGAAATGATTCGCGAGG
CCGATACAAATGGCGATGGTGAAATCGACATTGCCGAGTTTATCCGAATG
ATGGGCTACGGTCCGTAA
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