Ggra3000.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3000.t1
Unique NameGgra3000.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:845774..846943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T014370
PFAMsPeptidase_A22B
Max annot lvl121069|Pythiales
Evalue2.63e-44
EggNOG OGsKOG2443@1|root,KOG2443@2759|Eukaryota,1MB5F@121069|Pythiales
DescriptionAspartyl protease family A22B. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3000Ggra3000Gracilaria gracilis GNS1m malegenetig00000858_pilon 845774..846943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1Ggra3000.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 845774..846943 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1.stop1Ggra3000.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 845774..845776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1.CDS1Ggra3000.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 845774..846310 -
Ggra3000.t1.CDS2Ggra3000.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 846497..846943 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1.exon1Ggra3000.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 845774..846310 -
Ggra3000.t1.exon2Ggra3000.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 846497..846943 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1.intron1Ggra3000.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 846311..846496 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3000.t1.start1Ggra3000.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 846941..846943 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3000.t1 ID=Ggra3000.t1|Name=Ggra3000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MAPKWVSASYVGLVSLLLAPMAVPVPTAVQMMGLSTIIIIISSYNAAERE
RKRRREGDTDPRDVIGRDQAMRFPLVASVALFGMFLAFKYLPKEWVSFLL
TLYGITFGALAFAGVLGAWFETVKQLPPVFKKQFGHKDYVMLSLCDLLGS
VFGSNVMVAVAKQFEGPIKLIFPKYLGAGPKDTSMLGLGDIVIPGLFIAL
MLRFDIRHCNLSQPIPKRLPYFFGAVVAYVAGLVATYTALTVFEAAQPAL
LYLVPACLLTALAMSAVKREMVELIAYTEEEDEKAAAKKSASLDSSAPSK
EVTPTPDTEPSTLSSSTTDNTESKKDQ*
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spliced messenger RNA

>Ggra3000.t1 ID=Ggra3000.t1|Name=Ggra3000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000858_pilon:845774..846943- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAAAATGGGTCTCTGCCTCCTACGTCGGGCTCGTTTCACTCCT
GCTTGCCCCGATGGCTGTTCCTGTACCCACTGCAGTGCAGATGATGGGTC
TTTCCACCATAATCATCATCATCTCTTCGTACAACGCTGCAGAGCGTGAG
CGGAAACGGCGTCGTGAAGGAGATACTGACCCGCGCGATGTCATCGGCAG
AGATCAAGCCATGCGATTCCCGCTTGTTGCGTCTGTGGCTCTGTTTGGCA
TGTTTCTTGCATTCAAGTATCTCCCAAAGGAATGGGTTTCATTCCTACTC
ACCTTGTACGGAATTACCTTTGGCGCTCTTGCTTTCGCAGGTGTTCTGGG
TGCTTGGTTTGAAACTGTCAAGCAGTTGCCACCTGTTTTCAAGAAACAGT
TCGGCCATAAGGACTACGTTATGCTTTCCTTGTGTGACCTTCTAGGTAGC
GTATTTGGCTCCAACGTCATGGTGGCGGTTGCCAAGCAGTTTGAAGGCCC
GATTAAACTCATCTTTCCCAAGTACCTTGGAGCTGGACCGAAGGATACTT
CTATGTTAGGCCTCGGAGATATCGTCATACCCGGTCTATTCATCGCCTTG
ATGCTTCGTTTTGATATCAGGCATTGTAACCTATCCCAACCCATTCCGAA
ACGTTTACCGTACTTCTTCGGCGCTGTCGTGGCATATGTTGCTGGCTTGG
TTGCAACTTATACCGCCTTGACTGTGTTCGAAGCCGCTCAACCTGCATTA
CTTTACCTGGTTCCCGCATGTCTACTCACTGCTTTGGCCATGTCAGCTGT
CAAGAGGGAAATGGTAGAGCTGATCGCTTATACCGAGGAAGAAGATGAAA
AGGCTGCAGCCAAGAAAAGTGCATCACTGGACTCTAGCGCTCCATCGAAG
GAAGTAACGCCCACACCTGACACTGAGCCTTCCACTTTATCATCGTCAAC
TACAGACAACACGGAGTCAAAGAAAGATCAATAG
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protein sequence of Ggra3000.t1

>Ggra3000.t1 ID=Ggra3000.t1|Name=Ggra3000.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MAPKWVSASYVGLVSLLLAPMAVPVPTAVQMMGLSTIIIIISSYNAAERE
RKRRREGDTDPRDVIGRDQAMRFPLVASVALFGMFLAFKYLPKEWVSFLL
TLYGITFGALAFAGVLGAWFETVKQLPPVFKKQFGHKDYVMLSLCDLLGS
VFGSNVMVAVAKQFEGPIKLIFPKYLGAGPKDTSMLGLGDIVIPGLFIAL
MLRFDIRHCNLSQPIPKRLPYFFGAVVAYVAGLVATYTALTVFEAAQPAL
LYLVPACLLTALAMSAVKREMVELIAYTEEEDEKAAAKKSASLDSSAPSK
EVTPTPDTEPSTLSSSTTDNTESKKDQ*
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mRNA from alignment at tig00000858_pilon:845774..846943-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3000.t1 ID=Ggra3000.t1|Name=Ggra3000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000858_pilon:845774..846943- (Gracilaria gracilis GNS1m male)
ATGGCCCCAAAATGGGTCTCTGCCTCCTACGTCGGGCTCGTTTCACTCCT
GCTTGCCCCGATGGCTGTTCCTGTACCCACTGCAGTGCAGATGATGGGTC
TTTCCACCATAATCATCATCATCTCTTCGTACAACGCTGCAGAGCGTGAG
CGGAAACGGCGTCGTGAAGGAGATACTGACCCGCGCGATGTCATCGGCAG
AGATCAAGCCATGCGATTCCCGCTTGTTGCGTCTGTGGCTCTGTTTGGCA
TGTTTCTTGCATTCAAGTATCTCCCAAAGGAATGGGTTTCATTCCTACTC
ACCTTGTACGGAATTACCTTTGGCGCTCTTGCTTTCGCAGGTGTTCTGGG
TGCTTGGTTTGAAACTGTCAAGCAGTTGCCACCTGTTTTCAAGAAACAGT
TCGGCCATAAGGACTACGTTATGCTTTCCTTGTGTGACCTTCTAGGTGTT
ATTTGTGCTGCTCCTATTGCTGTCTGGTACTACAAAACCAGGATGTGGTT
ACCAAACAACATTCTCGCTGCTTCATTGGCTCTGTCTGCCGTTGACATGC
TTGCTATTCCGGACTTCAAGAGCGCTGCAGTCCTGCTAGTTGGCCTCTTT
GTGTACGACATCTTCTGGGTATTCGGCTCAAAGAGCGTATTTGGCTCCAA
CGTCATGGTGGCGGTTGCCAAGCAGTTTGAAGGCCCGATTAAACTCATCT
TTCCCAAGTACCTTGGAGCTGGACCGAAGGATACTTCTATGTTAGGCCTC
GGAGATATCGTCATACCCGGTCTATTCATCGCCTTGATGCTTCGTTTTGA
TATCAGGCATTGTAACCTATCCCAACCCATTCCGAAACGTTTACCGTACT
TCTTCGGCGCTGTCGTGGCATATGTTGCTGGCTTGGTTGCAACTTATACC
GCCTTGACTGTGTTCGAAGCCGCTCAACCTGCATTACTTTACCTGGTTCC
CGCATGTCTACTCACTGCTTTGGCCATGTCAGCTGTCAAGAGGGAAATGG
TAGAGCTGATCGCTTATACCGAGGAAGAAGATGAAAAGGCTGCAGCCAAG
AAAAGTGCATCACTGGACTCTAGCGCTCCATCGAAGGAAGTAACGCCCAC
ACCTGACACTGAGCCTTCCACTTTATCATCGTCAACTACAGACAACACGG
AGTCAAAGAAAGATCAATAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:845774..846943-

>Ggra3000.t1 ID=Ggra3000.t1|Name=Ggra3000.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000858_pilon:845774..846943- (Gracilaria gracilis GNS1m male)
ATGGCCCCAAAATGGGTCTCTGCCTCCTACGTCGGGCTCGTTTCACTCCT
GCTTGCCCCGATGGCTGTTCCTGTACCCACTGCAGTGCAGATGATGGGTC
TTTCCACCATAATCATCATCATCTCTTCGTACAACGCTGCAGAGCGTGAG
CGGAAACGGCGTCGTGAAGGAGATACTGACCCGCGCGATGTCATCGGCAG
AGATCAAGCCATGCGATTCCCGCTTGTTGCGTCTGTGGCTCTGTTTGGCA
TGTTTCTTGCATTCAAGTATCTCCCAAAGGAATGGGTTTCATTCCTACTC
ACCTTGTACGGAATTACCTTTGGCGCTCTTGCTTTCGCAGGTGTTCTGGG
TGCTTGGTTTGAAACTGTCAAGCAGTTGCCACCTGTTTTCAAGAAACAGT
TCGGCCATAAGGACTACGTTATGCTTTCCTTGTGTGACCTTCTAGGTAGC
GTATTTGGCTCCAACGTCATGGTGGCGGTTGCCAAGCAGTTTGAAGGCCC
GATTAAACTCATCTTTCCCAAGTACCTTGGAGCTGGACCGAAGGATACTT
CTATGTTAGGCCTCGGAGATATCGTCATACCCGGTCTATTCATCGCCTTG
ATGCTTCGTTTTGATATCAGGCATTGTAACCTATCCCAACCCATTCCGAA
ACGTTTACCGTACTTCTTCGGCGCTGTCGTGGCATATGTTGCTGGCTTGG
TTGCAACTTATACCGCCTTGACTGTGTTCGAAGCCGCTCAACCTGCATTA
CTTTACCTGGTTCCCGCATGTCTACTCACTGCTTTGGCCATGTCAGCTGT
CAAGAGGGAAATGGTAGAGCTGATCGCTTATACCGAGGAAGAAGATGAAA
AGGCTGCAGCCAAGAAAAGTGCATCACTGGACTCTAGCGCTCCATCGAAG
GAAGTAACGCCCACACCTGACACTGAGCCTTCCACTTTATCATCGTCAAC
TACAGACAACACGGAGTCAAAGAAAGATCAATAG
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