Ggra2999.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2999.t1
Unique NameGgra2999.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:844736..845620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra030901.1-P
PFAMsTFIID-31kDa
Max annot lvl35493|Streptophyta
KEGG koko:K03133
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000123,GO:0000124,GO:0000428,GO:0001067,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035097,GO:0036211,GO:0042221,GO:0042493,GO:0043170,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070461,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902065,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
Evalue5.94e-33
EggNOG OGsCOG5094@1|root,KOG3334@2759|Eukaryota,37RNV@33090|Viridiplantae,3GFQJ@35493|Streptophyta
DescriptionTranscription initiation factor TFIID subunit
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2999Ggra2999Gracilaria gracilis GNS1m malegenetig00000858_pilon 844736..845620 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2999.t1.start1Ggra2999.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 844736..844738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2999.t1.CDS1Ggra2999.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 844736..845620 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2999.t1.exon1Ggra2999.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 844736..845620 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2999.t1.stop1Ggra2999.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 845618..845620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2999.t1Ggra2999.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 844736..845620 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2999.t1 ID=Ggra2999.t1|Name=Ggra2999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MEAQSGKPRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDAR
NVCEHTFKTQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLP
QIEQMAGLSLPKPEYQLTEQNYDYVFDKNPASPAKRASPTRQPGASPKRQ
RLSPHQRPHTEPPRVLNTSPKSGTSNPTATVTAKNTSSPINKVASPAKAT
PNTNSPSANRPIQNSAVQSNPSTNPAAPATSLPGPQQSLGRQTIPASMLA
TQPTAPPGWNQTGPVPMNTQSPGRQNASAAGNVNLPSTQNPPPS*
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spliced messenger RNA

>Ggra2999.t1 ID=Ggra2999.t1|Name=Ggra2999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000858_pilon:844736..845620+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTCAGTCAGGAAAACCTCGCGATGCGCGCATTATAGAAGCCAT
TCTACGCGCTATGGGAGTGGATCAGTACGACCCAAGAGTGGTTAATCAAC
TGCTCGAGTTACTTTATCGTTACGTATCAGGTGTTCTACTCGATGCAAGA
AATGTTTGTGAACACACCTTCAAGACACAGATCGACGCCGAAGACATCAA
GTTGGCAATCAAATCAACATGCTCGCACAGTTTTCTTCAGCCGCCGCCAA
GAGAGGTTACCATGCGCATAGCAGCCGAGAGAAATAGTGTGCCTCTACCA
CAAATCGAGCAAATGGCCGGTCTGTCGCTTCCAAAGCCGGAGTATCAACT
AACGGAACAAAACTACGATTACGTGTTTGACAAGAACCCCGCATCACCAG
CCAAACGGGCCAGTCCAACACGGCAGCCAGGAGCCAGTCCGAAACGCCAA
CGTCTTAGTCCGCATCAAAGACCTCACACTGAACCACCGCGTGTACTCAA
TACAAGCCCAAAATCCGGCACTAGCAACCCGACAGCGACCGTCACCGCCA
AGAACACGAGCAGTCCAATCAACAAAGTGGCGTCACCGGCCAAGGCAACC
CCTAATACTAACTCACCCTCTGCTAACCGCCCGATTCAAAATAGTGCTGT
TCAATCCAATCCGAGTACAAACCCGGCCGCCCCTGCAACCAGTCTCCCTG
GTCCACAGCAGTCTTTAGGAAGGCAAACCATTCCTGCGTCCATGCTTGCG
ACTCAACCAACAGCACCGCCGGGATGGAACCAAACGGGGCCGGTCCCGAT
GAACACGCAGTCACCGGGGAGACAAAACGCCAGCGCTGCTGGCAACGTTA
ACTTACCGTCAACTCAAAACCCTCCACCATCGTGA
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protein sequence of Ggra2999.t1

>Ggra2999.t1 ID=Ggra2999.t1|Name=Ggra2999.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MEAQSGKPRDARIIEAILRAMGVDQYDPRVVNQLLELLYRYVSGVLLDAR
NVCEHTFKTQIDAEDIKLAIKSTCSHSFLQPPPREVTMRIAAERNSVPLP
QIEQMAGLSLPKPEYQLTEQNYDYVFDKNPASPAKRASPTRQPGASPKRQ
RLSPHQRPHTEPPRVLNTSPKSGTSNPTATVTAKNTSSPINKVASPAKAT
PNTNSPSANRPIQNSAVQSNPSTNPAAPATSLPGPQQSLGRQTIPASMLA
TQPTAPPGWNQTGPVPMNTQSPGRQNASAAGNVNLPSTQNPPPS*
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mRNA from alignment at tig00000858_pilon:844736..845620+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2999.t1 ID=Ggra2999.t1|Name=Ggra2999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000858_pilon:844736..845620+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTCAGTCAGGAAAACCTCGCGATGCGCGCATTATAGAAGCCAT
TCTACGCGCTATGGGAGTGGATCAGTACGACCCAAGAGTGGTTAATCAAC
TGCTCGAGTTACTTTATCGTTACGTATCAGGTGTTCTACTCGATGCAAGA
AATGTTTGTGAACACACCTTCAAGACACAGATCGACGCCGAAGACATCAA
GTTGGCAATCAAATCAACATGCTCGCACAGTTTTCTTCAGCCGCCGCCAA
GAGAGGTTACCATGCGCATAGCAGCCGAGAGAAATAGTGTGCCTCTACCA
CAAATCGAGCAAATGGCCGGTCTGTCGCTTCCAAAGCCGGAGTATCAACT
AACGGAACAAAACTACGATTACGTGTTTGACAAGAACCCCGCATCACCAG
CCAAACGGGCCAGTCCAACACGGCAGCCAGGAGCCAGTCCGAAACGCCAA
CGTCTTAGTCCGCATCAAAGACCTCACACTGAACCACCGCGTGTACTCAA
TACAAGCCCAAAATCCGGCACTAGCAACCCGACAGCGACCGTCACCGCCA
AGAACACGAGCAGTCCAATCAACAAAGTGGCGTCACCGGCCAAGGCAACC
CCTAATACTAACTCACCCTCTGCTAACCGCCCGATTCAAAATAGTGCTGT
TCAATCCAATCCGAGTACAAACCCGGCCGCCCCTGCAACCAGTCTCCCTG
GTCCACAGCAGTCTTTAGGAAGGCAAACCATTCCTGCGTCCATGCTTGCG
ACTCAACCAACAGCACCGCCGGGATGGAACCAAACGGGGCCGGTCCCGAT
GAACACGCAGTCACCGGGGAGACAAAACGCCAGCGCTGCTGGCAACGTTA
ACTTACCGTCAACTCAAAACCCTCCACCATCGTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:844736..845620+

>Ggra2999.t1 ID=Ggra2999.t1|Name=Ggra2999.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000858_pilon:844736..845620+ (Gracilaria gracilis GNS1m male)
ATGGAAGCTCAGTCAGGAAAACCTCGCGATGCGCGCATTATAGAAGCCAT
TCTACGCGCTATGGGAGTGGATCAGTACGACCCAAGAGTGGTTAATCAAC
TGCTCGAGTTACTTTATCGTTACGTATCAGGTGTTCTACTCGATGCAAGA
AATGTTTGTGAACACACCTTCAAGACACAGATCGACGCCGAAGACATCAA
GTTGGCAATCAAATCAACATGCTCGCACAGTTTTCTTCAGCCGCCGCCAA
GAGAGGTTACCATGCGCATAGCAGCCGAGAGAAATAGTGTGCCTCTACCA
CAAATCGAGCAAATGGCCGGTCTGTCGCTTCCAAAGCCGGAGTATCAACT
AACGGAACAAAACTACGATTACGTGTTTGACAAGAACCCCGCATCACCAG
CCAAACGGGCCAGTCCAACACGGCAGCCAGGAGCCAGTCCGAAACGCCAA
CGTCTTAGTCCGCATCAAAGACCTCACACTGAACCACCGCGTGTACTCAA
TACAAGCCCAAAATCCGGCACTAGCAACCCGACAGCGACCGTCACCGCCA
AGAACACGAGCAGTCCAATCAACAAAGTGGCGTCACCGGCCAAGGCAACC
CCTAATACTAACTCACCCTCTGCTAACCGCCCGATTCAAAATAGTGCTGT
TCAATCCAATCCGAGTACAAACCCGGCCGCCCCTGCAACCAGTCTCCCTG
GTCCACAGCAGTCTTTAGGAAGGCAAACCATTCCTGCGTCCATGCTTGCG
ACTCAACCAACAGCACCGCCGGGATGGAACCAAACGGGGCCGGTCCCGAT
GAACACGCAGTCACCGGGGAGACAAAACGCCAGCGCTGCTGGCAACGTTA
ACTTACCGTCAACTCAAAACCCTCCACCATCGTGA
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