Ggra2996.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2996.t1
Unique Name	Ggra2996.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000858_pilon	contig	tig00000858_pilon:839080..840882 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704317.1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13806
KEGG Pathway	ko04723,ko04745,ko04925,map04723,map04745,map04925
Evalue	3.57e-34
EggNOG OGs	KOG2088@1\|root,KOG2088@2759\|Eukaryota
Description	retrograde trans-synaptic signaling by lipid
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2996	Ggra2996	Gracilaria gracilis GNS1m male	gene	tig00000858_pilon 839080..840882 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2996.t1.start1	Ggra2996.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000858_pilon 839080..839082 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2996.t1.CDS1	Ggra2996.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000858_pilon 839080..840882 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2996.t1.exon1	Ggra2996.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000858_pilon 839080..840882 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2996.t1.stop1	Ggra2996.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000858_pilon 840880..840882 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2996.t1	Ggra2996.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000858_pilon 839080..840882 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000858_pilon:839080..840882+
coding sequence from alignment at tig00000858_pilon:839080..840882+

mRNA sequence

>Ggra2996.t1 ID=Ggra2996.t1|Name=Ggra2996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=601bp
MGISPRDPSDPCYRAIAKLKIMKSQHGIEHVSLHDFFLAIGVFTKMVNRH
TRKAIKHSRHTLASKASSDEGLIAGSSQSCNNLYAQQLLLSEEAPGGAGT
SAFGDFDAQRLQIPERSPIQDISNPRRRSLSFYRASRSTDTSKQRRRRWS
LPETSIQVQPDLLFGMFSGGSTAIPQYPEWRPHGLSSFMHTPPEVRPEHV
QLMHHMLRHAESIYGLPLNVPSAPRVSLTNLTDRRIVCARTGVSQSDLVH
TVFETQSFMPAHYVAIDRQIKAIVVCIRGTANFVDLLTDMAATMDPLRIR
RDRSTSVRGNDIVEGYGHAGIVRSARNLFNRIRDITLRCLRDNQGFELLV
TGHSLGAAAASVLALIMRDDPAFPRATAICIAPPPCMTVELAEETASNTI
TLVNGPDIVPRLSVAVLLPFFATAQYVSSLNPGQKAMLSMGLKTTVIDWK
ELYRHNRERVPEMRKHHEGKRLYIPGKVFQLVRRKRTRSADWPRTRFFRR
QKVEVVPVSRVCFSQMPERERGMFLSHAPFNYKVSLLLALKHLRSSPLRV
MNARSVLSNIFSLPVVSKLKPDVQDHRQGAGSLDGLLRKLTQDGSESPVP
*

spliced messenger RNA

>Ggra2996.t1 ID=Ggra2996.t1|Name=Ggra2996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000858_pilon:839080..840882+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATCAGCCCTCGAGATCCCAGTGATCCTTGCTACAGAGCTATTGC
AAAGCTGAAAATAATGAAGTCACAGCATGGCATCGAACATGTCAGTCTCC
ACGATTTCTTTCTGGCTATTGGCGTGTTTACGAAGATGGTGAACCGCCAT
ACCAGAAAAGCCATAAAGCATTCTCGACATACGTTAGCCTCCAAGGCTAG
CTCAGACGAGGGACTCATTGCTGGCTCTAGTCAATCGTGCAATAACTTAT
ATGCTCAGCAGCTACTGTTATCGGAAGAAGCTCCCGGCGGAGCTGGAACA
TCCGCATTTGGTGACTTTGATGCTCAACGACTTCAGATACCGGAGAGAAG
CCCAATCCAAGACATTTCTAACCCACGTCGACGCTCTCTGTCATTCTACC
GTGCTAGTAGAAGCACTGACACTTCCAAACAACGAAGACGACGATGGTCT
CTACCGGAAACGAGTATCCAGGTTCAACCCGATTTGCTTTTCGGCATGTT
TTCCGGAGGAAGCACAGCCATTCCTCAGTATCCGGAGTGGCGCCCACATG
GGTTGAGTTCTTTTATGCATACGCCTCCAGAGGTCCGACCAGAACATGTG
CAGTTGATGCATCACATGTTGCGCCACGCCGAAAGCATCTACGGCTTGCC
TCTTAACGTTCCTTCAGCACCACGGGTCTCCCTCACAAATCTGACAGATC
GTCGGATTGTGTGTGCGAGGACTGGAGTTAGTCAGTCGGATTTGGTGCAT
ACCGTGTTCGAAACGCAGTCTTTCATGCCCGCGCACTATGTTGCTATAGA
TCGACAGATCAAGGCTATAGTGGTTTGCATAAGGGGTACGGCAAACTTTG
TTGATCTTCTAACGGATATGGCAGCCACGATGGACCCTTTGCGAATTCGA
CGCGATCGATCTACTTCTGTTCGTGGAAACGACATAGTAGAAGGCTACGG
ACATGCTGGTATAGTGAGAAGCGCACGTAATCTCTTTAACAGAATACGTG
ATATAACTCTACGTTGCCTTCGTGATAACCAGGGGTTCGAATTGCTTGTC
ACAGGACATTCTCTTGGAGCGGCCGCTGCGTCTGTGCTTGCACTCATAAT
GCGGGATGATCCCGCGTTTCCTCGCGCGACGGCGATATGCATTGCCCCTC
CTCCATGTATGACTGTGGAACTTGCAGAAGAAACAGCTTCAAATACCATC
ACTCTTGTCAATGGGCCAGATATTGTACCGAGATTAAGTGTAGCCGTTTT
ACTCCCTTTTTTCGCTACAGCTCAGTATGTGTCTTCGTTAAACCCTGGTC
AGAAGGCTATGCTCAGCATGGGTTTAAAAACAACGGTGATTGATTGGAAA
GAGCTTTACAGGCATAATCGAGAAAGAGTACCTGAGATGAGGAAGCACCA
TGAAGGAAAGAGACTGTACATTCCAGGAAAAGTGTTTCAACTCGTCCGAA
GAAAAAGGACTAGATCGGCTGACTGGCCAAGAACCAGATTTTTCCGGCGG
CAAAAAGTGGAGGTAGTCCCGGTTTCACGTGTGTGCTTTAGCCAAATGCC
GGAAAGAGAGCGTGGAATGTTTCTTTCACATGCGCCGTTTAACTACAAGG
TTAGCCTGTTGCTTGCTTTGAAACATCTGCGGTCTAGCCCTCTCAGGGTA
ATGAATGCGAGATCTGTCCTTAGCAACATATTTTCTTTGCCAGTTGTGTC
GAAGCTCAAGCCGGATGTCCAGGATCATCGCCAAGGCGCCGGGTCTTTGG
ATGGATTGCTAAGGAAGCTGACGCAAGACGGATCGGAGTCCCCTGTTCCG
TGA

protein sequence of Ggra2996.t1

>Ggra2996.t1 ID=Ggra2996.t1|Name=Ggra2996.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=601bp
MGISPRDPSDPCYRAIAKLKIMKSQHGIEHVSLHDFFLAIGVFTKMVNRH
TRKAIKHSRHTLASKASSDEGLIAGSSQSCNNLYAQQLLLSEEAPGGAGT
SAFGDFDAQRLQIPERSPIQDISNPRRRSLSFYRASRSTDTSKQRRRRWS
LPETSIQVQPDLLFGMFSGGSTAIPQYPEWRPHGLSSFMHTPPEVRPEHV
QLMHHMLRHAESIYGLPLNVPSAPRVSLTNLTDRRIVCARTGVSQSDLVH
TVFETQSFMPAHYVAIDRQIKAIVVCIRGTANFVDLLTDMAATMDPLRIR
RDRSTSVRGNDIVEGYGHAGIVRSARNLFNRIRDITLRCLRDNQGFELLV
TGHSLGAAAASVLALIMRDDPAFPRATAICIAPPPCMTVELAEETASNTI
TLVNGPDIVPRLSVAVLLPFFATAQYVSSLNPGQKAMLSMGLKTTVIDWK
ELYRHNRERVPEMRKHHEGKRLYIPGKVFQLVRRKRTRSADWPRTRFFRR
QKVEVVPVSRVCFSQMPERERGMFLSHAPFNYKVSLLLALKHLRSSPLRV
MNARSVLSNIFSLPVVSKLKPDVQDHRQGAGSLDGLLRKLTQDGSESPVP
*

mRNA from alignment at tig00000858_pilon:839080..840882+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2996.t1 ID=Ggra2996.t1|Name=Ggra2996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000858_pilon:839080..840882+ (Gracilaria gracilis GNS1m male)
ATGGGAATCAGCCCTCGAGATCCCAGTGATCCTTGCTACAGAGCTATTGC
AAAGCTGAAAATAATGAAGTCACAGCATGGCATCGAACATGTCAGTCTCC
ACGATTTCTTTCTGGCTATTGGCGTGTTTACGAAGATGGTGAACCGCCAT
ACCAGAAAAGCCATAAAGCATTCTCGACATACGTTAGCCTCCAAGGCTAG
CTCAGACGAGGGACTCATTGCTGGCTCTAGTCAATCGTGCAATAACTTAT
ATGCTCAGCAGCTACTGTTATCGGAAGAAGCTCCCGGCGGAGCTGGAACA
TCCGCATTTGGTGACTTTGATGCTCAACGACTTCAGATACCGGAGAGAAG
CCCAATCCAAGACATTTCTAACCCACGTCGACGCTCTCTGTCATTCTACC
GTGCTAGTAGAAGCACTGACACTTCCAAACAACGAAGACGACGATGGTCT
CTACCGGAAACGAGTATCCAGGTTCAACCCGATTTGCTTTTCGGCATGTT
TTCCGGAGGAAGCACAGCCATTCCTCAGTATCCGGAGTGGCGCCCACATG
GGTTGAGTTCTTTTATGCATACGCCTCCAGAGGTCCGACCAGAACATGTG
CAGTTGATGCATCACATGTTGCGCCACGCCGAAAGCATCTACGGCTTGCC
TCTTAACGTTCCTTCAGCACCACGGGTCTCCCTCACAAATCTGACAGATC
GTCGGATTGTGTGTGCGAGGACTGGAGTTAGTCAGTCGGATTTGGTGCAT
ACCGTGTTCGAAACGCAGTCTTTCATGCCCGCGCACTATGTTGCTATAGA
TCGACAGATCAAGGCTATAGTGGTTTGCATAAGGGGTACGGCAAACTTTG
TTGATCTTCTAACGGATATGGCAGCCACGATGGACCCTTTGCGAATTCGA
CGCGATCGATCTACTTCTGTTCGTGGAAACGACATAGTAGAAGGCTACGG
ACATGCTGGTATAGTGAGAAGCGCACGTAATCTCTTTAACAGAATACGTG
ATATAACTCTACGTTGCCTTCGTGATAACCAGGGGTTCGAATTGCTTGTC
ACAGGACATTCTCTTGGAGCGGCCGCTGCGTCTGTGCTTGCACTCATAAT
GCGGGATGATCCCGCGTTTCCTCGCGCGACGGCGATATGCATTGCCCCTC
CTCCATGTATGACTGTGGAACTTGCAGAAGAAACAGCTTCAAATACCATC
ACTCTTGTCAATGGGCCAGATATTGTACCGAGATTAAGTGTAGCCGTTTT
ACTCCCTTTTTTCGCTACAGCTCAGTATGTGTCTTCGTTAAACCCTGGTC
AGAAGGCTATGCTCAGCATGGGTTTAAAAACAACGGTGATTGATTGGAAA
GAGCTTTACAGGCATAATCGAGAAAGAGTACCTGAGATGAGGAAGCACCA
TGAAGGAAAGAGACTGTACATTCCAGGAAAAGTGTTTCAACTCGTCCGAA
GAAAAAGGACTAGATCGGCTGACTGGCCAAGAACCAGATTTTTCCGGCGG
CAAAAAGTGGAGGTAGTCCCGGTTTCACGTGTGTGCTTTAGCCAAATGCC
GGAAAGAGAGCGTGGAATGTTTCTTTCACATGCGCCGTTTAACTACAAGG
TTAGCCTGTTGCTTGCTTTGAAACATCTGCGGTCTAGCCCTCTCAGGGTA
ATGAATGCGAGATCTGTCCTTAGCAACATATTTTCTTTGCCAGTTGTGTC
GAAGCTCAAGCCGGATGTCCAGGATCATCGCCAAGGCGCCGGGTCTTTGG
ATGGATTGCTAAGGAAGCTGACGCAAGACGGATCGGAGTCCCCTGTTCCG
TGA

Coding sequence (CDS) from alignment at tig00000858_pilon:839080..840882+

>Ggra2996.t1 ID=Ggra2996.t1|Name=Ggra2996.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1803bp|location=Sequence derived from alignment at tig00000858_pilon:839080..840882+ (Gracilaria gracilis GNS1m male)
ATGGGAATCAGCCCTCGAGATCCCAGTGATCCTTGCTACAGAGCTATTGC
AAAGCTGAAAATAATGAAGTCACAGCATGGCATCGAACATGTCAGTCTCC
ACGATTTCTTTCTGGCTATTGGCGTGTTTACGAAGATGGTGAACCGCCAT
ACCAGAAAAGCCATAAAGCATTCTCGACATACGTTAGCCTCCAAGGCTAG
CTCAGACGAGGGACTCATTGCTGGCTCTAGTCAATCGTGCAATAACTTAT
ATGCTCAGCAGCTACTGTTATCGGAAGAAGCTCCCGGCGGAGCTGGAACA
TCCGCATTTGGTGACTTTGATGCTCAACGACTTCAGATACCGGAGAGAAG
CCCAATCCAAGACATTTCTAACCCACGTCGACGCTCTCTGTCATTCTACC
GTGCTAGTAGAAGCACTGACACTTCCAAACAACGAAGACGACGATGGTCT
CTACCGGAAACGAGTATCCAGGTTCAACCCGATTTGCTTTTCGGCATGTT
TTCCGGAGGAAGCACAGCCATTCCTCAGTATCCGGAGTGGCGCCCACATG
GGTTGAGTTCTTTTATGCATACGCCTCCAGAGGTCCGACCAGAACATGTG
CAGTTGATGCATCACATGTTGCGCCACGCCGAAAGCATCTACGGCTTGCC
TCTTAACGTTCCTTCAGCACCACGGGTCTCCCTCACAAATCTGACAGATC
GTCGGATTGTGTGTGCGAGGACTGGAGTTAGTCAGTCGGATTTGGTGCAT
ACCGTGTTCGAAACGCAGTCTTTCATGCCCGCGCACTATGTTGCTATAGA
TCGACAGATCAAGGCTATAGTGGTTTGCATAAGGGGTACGGCAAACTTTG
TTGATCTTCTAACGGATATGGCAGCCACGATGGACCCTTTGCGAATTCGA
CGCGATCGATCTACTTCTGTTCGTGGAAACGACATAGTAGAAGGCTACGG
ACATGCTGGTATAGTGAGAAGCGCACGTAATCTCTTTAACAGAATACGTG
ATATAACTCTACGTTGCCTTCGTGATAACCAGGGGTTCGAATTGCTTGTC
ACAGGACATTCTCTTGGAGCGGCCGCTGCGTCTGTGCTTGCACTCATAAT
GCGGGATGATCCCGCGTTTCCTCGCGCGACGGCGATATGCATTGCCCCTC
CTCCATGTATGACTGTGGAACTTGCAGAAGAAACAGCTTCAAATACCATC
ACTCTTGTCAATGGGCCAGATATTGTACCGAGATTAAGTGTAGCCGTTTT
ACTCCCTTTTTTCGCTACAGCTCAGTATGTGTCTTCGTTAAACCCTGGTC
AGAAGGCTATGCTCAGCATGGGTTTAAAAACAACGGTGATTGATTGGAAA
GAGCTTTACAGGCATAATCGAGAAAGAGTACCTGAGATGAGGAAGCACCA
TGAAGGAAAGAGACTGTACATTCCAGGAAAAGTGTTTCAACTCGTCCGAA
GAAAAAGGACTAGATCGGCTGACTGGCCAAGAACCAGATTTTTCCGGCGG
CAAAAAGTGGAGGTAGTCCCGGTTTCACGTGTGTGCTTTAGCCAAATGCC
GGAAAGAGAGCGTGGAATGTTTCTTTCACATGCGCCGTTTAACTACAAGG
TTAGCCTGTTGCTTGCTTTGAAACATCTGCGGTCTAGCCCTCTCAGGGTA
ATGAATGCGAGATCTGTCCTTAGCAACATATTTTCTTTGCCAGTTGTGTC
GAAGCTCAAGCCGGATGTCCAGGATCATCGCCAAGGCGCCGGGTCTTTGG
ATGGATTGCTAAGGAAGCTGACGCAAGACGGATCGGAGTCCCCTGTTCCG
TGA