Ggra2992.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2992.t1
Unique NameGgra2992.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:827553..829000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708192.1
Preferred nameCCBL2
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC01210,RC01245
KEGG koko:K00816,ko:K09142,ko:K14264
KEGG ReactionR01956,R04171,R09366,R09373
KEGG Pathwayko00380,ko00450,ko01100,ko05204,map00380,map00450,map01100,map05204
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006090,GO:0006103,GO:0006520,GO:0006558,GO:0006559,GO:0006568,GO:0006569,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016053,GO:0016054,GO:0016212,GO:0016740,GO:0016769,GO:0016829,GO:0016846,GO:0017144,GO:0019439,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0034641,GO:0036137,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0042737,GO:0042802,GO:0042803,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0047312,GO:0047315,GO:0047316,GO:0047804,GO:0047945,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0070013,GO:0070189,GO:0070546,GO:0070548,GO:0071704,GO:0097052,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902221,GO:1902222
Evalue5.01e-114
EggNOG OGsCOG0436@1|root,KOG0257@2759|Eukaryota
EC2.6.1.64,2.6.1.7,4.4.1.13
Descriptiontransferase activity, transferring nitrogenous groups
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2992Ggra2992Gracilaria gracilis GNS1m malegenetig00000858_pilon 827553..829000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1Ggra2992.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 827553..829000 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1.start1Ggra2992.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 827553..827555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1.CDS1Ggra2992.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 827553..827667 +
Ggra2992.t1.CDS2Ggra2992.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 827766..829000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1.exon1Ggra2992.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 827553..827667 +
Ggra2992.t1.exon2Ggra2992.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 827766..829000 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1.intron1Ggra2992.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 827668..827765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2992.t1.stop1Ggra2992.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 828998..829000 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2992.t1 ID=Ggra2992.t1|Name=Ggra2992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MSGRFLQPPRTSRMLPFGGPSVWLEFTPLSKLTSSVNLGQGAPGWASPSF
VKDALAKAVQADERCQYSRSAGTPSFVEEIARMYGPKLLPANLQSRGIDP
LKEVLVTVGASQALSVACGAFLQEGDEAVLIEPAFDIYTAAVKVAGAEPV
YVPLRVKGRHPSSANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSL
EEQKGILDVIEAKAPSCIVLSDEVYEHLVFTGEHVPFASVSEGAFERTLS
TYSIGKTFSATGMKVGWLIGPQNLMRDPQILQQYTVFCVNHASQAAAAEM
LQFAQSPYEGFSSYYEWLCDRYKCKRDFLVEAIRSAGMEPIVPQGAFYIC
AKVPDGHEIKKEKGLPDQIGKLVEQGSLQIDPCTVDRMDYNMSRQLVEKK
RVTTIPISAFFKPEHVGKSDLSRDFIRFAFCHPDDVLSEASRRLGNGAS*
back to top

spliced messenger RNA

>Ggra2992.t1 ID=Ggra2992.t1|Name=Ggra2992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000858_pilon:827553..829000+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGACGCTTTCTTCAGCCACCACGGACTTCTCGAATGCTCCCGTT
CGGTGGCCCTTCAGTTTGGTTGGAATTTACGCCTCTGTCGAAGCTTACTT
CCAGTGTGAACCTCGGTCAAGGAGCTCCTGGGTGGGCTTCCCCTTCTTTT
GTCAAAGATGCTCTGGCAAAAGCAGTTCAGGCTGATGAACGTTGTCAATA
TTCTCGTTCTGCTGGTACACCTTCGTTCGTTGAAGAAATCGCGCGCATGT
ACGGACCTAAATTGCTACCCGCAAATCTGCAGTCACGTGGAATTGACCCC
CTGAAAGAAGTGCTTGTTACAGTTGGTGCATCCCAAGCTCTTAGTGTGGC
TTGTGGTGCCTTTCTTCAAGAAGGTGATGAAGCTGTCCTTATAGAACCAG
CATTTGACATCTACACCGCTGCAGTAAAGGTGGCAGGAGCTGAGCCCGTC
TACGTTCCACTTCGTGTAAAGGGGAGGCATCCTTCATCTGCAAATGACTT
TGTTCTTGACCTTGAGGAACTATCGAATGCCATCACAGATAAAACCCGAA
TGCTCATCCTAAACTCTCCTCATAACCCCACAGGAAAAGTGTTTTCGCTT
GAGGAACAAAAAGGGATATTGGATGTAATTGAAGCTAAAGCTCCCTCCTG
TATCGTACTGTCCGATGAAGTGTACGAGCATCTAGTGTTCACTGGTGAAC
ATGTTCCCTTTGCATCGGTCTCTGAGGGTGCATTCGAGCGCACTCTTAGT
ACATACAGCATTGGAAAGACATTTAGCGCGACTGGAATGAAAGTTGGTTG
GTTAATCGGTCCCCAGAATCTCATGAGAGATCCTCAAATTCTTCAGCAGT
ACACAGTGTTTTGTGTGAATCATGCAAGTCAAGCCGCCGCTGCTGAAATG
CTGCAATTCGCTCAAAGTCCGTATGAGGGATTTAGCTCCTACTATGAATG
GCTGTGTGACAGGTACAAATGCAAACGGGACTTCTTAGTAGAAGCTATTC
GCAGCGCTGGAATGGAACCAATTGTGCCTCAGGGTGCCTTCTACATCTGT
GCAAAAGTGCCTGATGGGCATGAGATCAAGAAAGAGAAAGGTTTGCCCGA
TCAGATTGGCAAACTAGTGGAGCAAGGATCGCTGCAAATCGATCCTTGTA
CGGTAGATCGAATGGACTATAACATGTCTCGTCAACTGGTGGAAAAGAAG
AGAGTTACTACAATTCCAATATCTGCGTTCTTTAAGCCAGAGCATGTTGG
CAAGAGTGATCTTTCGCGGGACTTCATTCGCTTTGCGTTTTGTCATCCTG
ATGATGTTCTTTCAGAAGCTTCCAGACGACTAGGTAACGGTGCTTCGTGA
back to top

protein sequence of Ggra2992.t1

>Ggra2992.t1 ID=Ggra2992.t1|Name=Ggra2992.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MSGRFLQPPRTSRMLPFGGPSVWLEFTPLSKLTSSVNLGQGAPGWASPSF
VKDALAKAVQADERCQYSRSAGTPSFVEEIARMYGPKLLPANLQSRGIDP
LKEVLVTVGASQALSVACGAFLQEGDEAVLIEPAFDIYTAAVKVAGAEPV
YVPLRVKGRHPSSANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSL
EEQKGILDVIEAKAPSCIVLSDEVYEHLVFTGEHVPFASVSEGAFERTLS
TYSIGKTFSATGMKVGWLIGPQNLMRDPQILQQYTVFCVNHASQAAAAEM
LQFAQSPYEGFSSYYEWLCDRYKCKRDFLVEAIRSAGMEPIVPQGAFYIC
AKVPDGHEIKKEKGLPDQIGKLVEQGSLQIDPCTVDRMDYNMSRQLVEKK
RVTTIPISAFFKPEHVGKSDLSRDFIRFAFCHPDDVLSEASRRLGNGAS*
back to top

mRNA from alignment at tig00000858_pilon:827553..829000+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2992.t1 ID=Ggra2992.t1|Name=Ggra2992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1448bp|location=Sequence derived from alignment at tig00000858_pilon:827553..829000+ (Gracilaria gracilis GNS1m male)
ATGTCTGGACGCTTTCTTCAGCCACCACGGACTTCTCGAATGCTCCCGTT
CGGTGGCCCTTCAGTTTGGTTGGAATTTACGCCTCTGTCGAAGCTTACTT
CCAGTGTGAACCTCGGTGAGTCTTTGTGCAACACATCGGACTTTTTGCGG
ACTCCAATATATACTTGAACACATGTCTAACAGGCAAAGCGATATCTTGG
TTGATAAGCGTAGGTCAAGGAGCTCCTGGGTGGGCTTCCCCTTCTTTTGT
CAAAGATGCTCTGGCAAAAGCAGTTCAGGCTGATGAACGTTGTCAATATT
CTCGTTCTGCTGGTACACCTTCGTTCGTTGAAGAAATCGCGCGCATGTAC
GGACCTAAATTGCTACCCGCAAATCTGCAGTCACGTGGAATTGACCCCCT
GAAAGAAGTGCTTGTTACAGTTGGTGCATCCCAAGCTCTTAGTGTGGCTT
GTGGTGCCTTTCTTCAAGAAGGTGATGAAGCTGTCCTTATAGAACCAGCA
TTTGACATCTACACCGCTGCAGTAAAGGTGGCAGGAGCTGAGCCCGTCTA
CGTTCCACTTCGTGTAAAGGGGAGGCATCCTTCATCTGCAAATGACTTTG
TTCTTGACCTTGAGGAACTATCGAATGCCATCACAGATAAAACCCGAATG
CTCATCCTAAACTCTCCTCATAACCCCACAGGAAAAGTGTTTTCGCTTGA
GGAACAAAAAGGGATATTGGATGTAATTGAAGCTAAAGCTCCCTCCTGTA
TCGTACTGTCCGATGAAGTGTACGAGCATCTAGTGTTCACTGGTGAACAT
GTTCCCTTTGCATCGGTCTCTGAGGGTGCATTCGAGCGCACTCTTAGTAC
ATACAGCATTGGAAAGACATTTAGCGCGACTGGAATGAAAGTTGGTTGGT
TAATCGGTCCCCAGAATCTCATGAGAGATCCTCAAATTCTTCAGCAGTAC
ACAGTGTTTTGTGTGAATCATGCAAGTCAAGCCGCCGCTGCTGAAATGCT
GCAATTCGCTCAAAGTCCGTATGAGGGATTTAGCTCCTACTATGAATGGC
TGTGTGACAGGTACAAATGCAAACGGGACTTCTTAGTAGAAGCTATTCGC
AGCGCTGGAATGGAACCAATTGTGCCTCAGGGTGCCTTCTACATCTGTGC
AAAAGTGCCTGATGGGCATGAGATCAAGAAAGAGAAAGGTTTGCCCGATC
AGATTGGCAAACTAGTGGAGCAAGGATCGCTGCAAATCGATCCTTGTACG
GTAGATCGAATGGACTATAACATGTCTCGTCAACTGGTGGAAAAGAAGAG
AGTTACTACAATTCCAATATCTGCGTTCTTTAAGCCAGAGCATGTTGGCA
AGAGTGATCTTTCGCGGGACTTCATTCGCTTTGCGTTTTGTCATCCTGAT
GATGTTCTTTCAGAAGCTTCCAGACGACTAGGTAACGGTGCTTCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000858_pilon:827553..829000+

>Ggra2992.t1 ID=Ggra2992.t1|Name=Ggra2992.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000858_pilon:827553..829000+ (Gracilaria gracilis GNS1m male)
ATGTCTGGACGCTTTCTTCAGCCACCACGGACTTCTCGAATGCTCCCGTT
CGGTGGCCCTTCAGTTTGGTTGGAATTTACGCCTCTGTCGAAGCTTACTT
CCAGTGTGAACCTCGGTCAAGGAGCTCCTGGGTGGGCTTCCCCTTCTTTT
GTCAAAGATGCTCTGGCAAAAGCAGTTCAGGCTGATGAACGTTGTCAATA
TTCTCGTTCTGCTGGTACACCTTCGTTCGTTGAAGAAATCGCGCGCATGT
ACGGACCTAAATTGCTACCCGCAAATCTGCAGTCACGTGGAATTGACCCC
CTGAAAGAAGTGCTTGTTACAGTTGGTGCATCCCAAGCTCTTAGTGTGGC
TTGTGGTGCCTTTCTTCAAGAAGGTGATGAAGCTGTCCTTATAGAACCAG
CATTTGACATCTACACCGCTGCAGTAAAGGTGGCAGGAGCTGAGCCCGTC
TACGTTCCACTTCGTGTAAAGGGGAGGCATCCTTCATCTGCAAATGACTT
TGTTCTTGACCTTGAGGAACTATCGAATGCCATCACAGATAAAACCCGAA
TGCTCATCCTAAACTCTCCTCATAACCCCACAGGAAAAGTGTTTTCGCTT
GAGGAACAAAAAGGGATATTGGATGTAATTGAAGCTAAAGCTCCCTCCTG
TATCGTACTGTCCGATGAAGTGTACGAGCATCTAGTGTTCACTGGTGAAC
ATGTTCCCTTTGCATCGGTCTCTGAGGGTGCATTCGAGCGCACTCTTAGT
ACATACAGCATTGGAAAGACATTTAGCGCGACTGGAATGAAAGTTGGTTG
GTTAATCGGTCCCCAGAATCTCATGAGAGATCCTCAAATTCTTCAGCAGT
ACACAGTGTTTTGTGTGAATCATGCAAGTCAAGCCGCCGCTGCTGAAATG
CTGCAATTCGCTCAAAGTCCGTATGAGGGATTTAGCTCCTACTATGAATG
GCTGTGTGACAGGTACAAATGCAAACGGGACTTCTTAGTAGAAGCTATTC
GCAGCGCTGGAATGGAACCAATTGTGCCTCAGGGTGCCTTCTACATCTGT
GCAAAAGTGCCTGATGGGCATGAGATCAAGAAAGAGAAAGGTTTGCCCGA
TCAGATTGGCAAACTAGTGGAGCAAGGATCGCTGCAAATCGATCCTTGTA
CGGTAGATCGAATGGACTATAACATGTCTCGTCAACTGGTGGAAAAGAAG
AGAGTTACTACAATTCCAATATCTGCGTTCTTTAAGCCAGAGCATGTTGG
CAAGAGTGATCTTTCGCGGGACTTCATTCGCTTTGCGTTTTGTCATCCTG
ATGATGTTCTTTCAGAAGCTTCCAGACGACTAGGTAACGGTGCTTCGTGA
back to top